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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3313#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 746 fasta sequence
[GACGAGACAAGGGGCACTATGACTGGATTTTATGGAAATTACATGAAAAAACTACTTAAACCTTTTAACAAGGTGCTCATAAATATAGTCCTTGAAATATGTTTAGTCTTGAAGCCAACTGTAGGTTTTAGATGGTTATTAGAGTGCTATATTTTTATACTACCTGATGGAATTCTGACTTGTTCTTAACTTCTGTAGATGCACAGTAATAATCTGAGCTGGCTTTTAAACATTAAAAACATAAACCTCTCCTAGAAGGAGAATTCTTAGTAGAACTATACTTTCTGAAGTAGAGCAAGGACGGAATAGTTGGAATTTTTGCATCATTTTGTCCATCTTATAGCAGCTTGTGCTGATACTTGTTGTATTTGATCACTTTGTGCTTTGCGCTGACTGTTGACAATTCTTTTCAATTGTGCAGCCTGCGCCTATGAGATCGTTGCACTTGCAAATAGTTAAAAATGAAGGAATGGACACTCATGTGATCACTCAAATCCACCAGAAAGTGATTCATCAGCATAAACTGTCATTTTGTCAGCACTAGTTCTGCACCTCCTGTTTTGATGGTACCATATAAAATAAAACAAACTAGGTTAACCTTCTTTGGCAAGATCTTTGTGCTCTCTTGGCCTAGTGTGACATGTAAACAGATGTATGCGATGAATGATCATCGCCTTTGNTTTCTTTTCCTTGACTTAGCACGCTCAAAGCTCAATAAAATGGGTTATTCTCGGGTTTGCTTGCTA]
[+] EMBL CA766684 [GACGAGACAAGGGGCACTATGACTGGATTTTATGGAAATTACATGAAAAAACTACTTAAACCTTTTAACAAGGTGCTCATAAATATAGTCCTTGAAATATGTTTAGTCTTGAAGCCAACTGTAGGTTTTAGATGGTTATTAGAGTGCTATATTTTTATACTACCTGATGGAATTCTGACTTGTTCTTAACTTCTGTAGATGCACAGTAATAATCTGAGCTGGCTTTTAAACATTAAAAACATAAACCTCTCCTAGAAGGAGAATTCTTAGTAGAACTATACTTTCTGAAGTAGAGCAAGGACGGAATAGTTGGAATTTTTGCATCATTTTGTCCATCTTATAGCAGCTTGTGCTGATACTTGTTGTATTTGATCACTTTGTGCTTTGCGCTGACTGTTGACAATTCTTTTCAATTGTGCAGCCTGCGCCTATGAGATCGTTGCACTTGCAAATAGTTAAAAATGAAGGAATGGACACTCATGTGATCACTCAAATCCACCAGAAAGTGATTCATCAGCATAAACTGTCATTTTGTCAGCACTAGTTCTGCACCTCCTGTTTTGATGGTACCATATAAAATAAAACAAACTAGGTTAACCTTCTTTGGCAAGATCTTTGTGCTCTCTTGGCCTAGTGTGACATGTAAACAGATGTATGCGATGAATGATCATCGCCTTTGNTTTCTTTTCCTTGACTTAGCACGCTCAAAGCTCAATAAAATGGGTTATTCTCGGGTTTGCTTGCTA]
consensusID : consensus_3313#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence
[CTCCTCGTCCCTCTTGCCCCCCTGACCCGCCGCGTCCGCCATGGCCCAGCCCGCCTTCCTCTCCGCCCTCCGCTCCCGCCTCCGCTCCCCGCAGCCGCAGGCGCCGGCGCTCCCCCACCTCCAGCCCCCCCGCCGCGGCTTCCACGTCGAGCTCGGCGCACGCGAGAAAGCGCTTTTGGAGGAGGATACTGCTCTGAAGAGGTTTAAATCATATAAGAACAGTGTGAAACAGGTCTCAAAGGTTGGGAATATTCTTACCGGCGTTGTCCTTTTTGCCTGCGCCTATGAGATCGTTGCACTGGCAAATAGTTAAATATGAAGGAATGGACACTCGTGTGATCACTGAAATCCACCAGAAAGTGATTCATCAGCATAAATTGGCATTTTGTCAGCACTAGTTCTGCACCTCCGGTGTTGATGGTAATATGTAAAATAAAACAAACTAGGTTAACCTTCTTTCGTAAGATCTTTGTGCTCTCTTGGCCTAGTGTTACATGTAAACGAATTGATGTATGCGATGAATGATCATCGCCTTTGTTTTCTTTTCCTTGACTTGCACGCTCAAAGCACAATAAAATAGTTCATCTCGG]
[+] EMBL AK105199 [CTCCTCGTCCCTCTTGCCCCCCTGACCCGCCGCGTCCGCCATGGCCCAGCCCGCCTTCCTCTCCGCCCTCCGCTCCCGCCTCCGCTCCCCGCAGCCGCAGGCGCCGGCGCTCCCCCACCTCCAGCCCCCCCGCCGCGGCTTCCACGTCGAGCTCGGCGCACGCGAGAAAGCGCTTTTGGAGGAGGATACTGCTCTGAAGAGGTTTAAATCATATAAGAACAGTGTGAAACAGGTCTCAAAGGTTGGGAATATTCTTACCGGCGTTGTCCTTTTTGCCTGCGCCTATGAGATCGTTGCACTGGCAAATAGTTAAATATGAAGGAATGGACACTCGTGTGATCACTGAAATCCACCAGAAAGTGATTCATCAGCATAAATTGGCATTTTGTCAGCACTAGTTCTGCACCTCCGGTGTTGATGGTAATATGTAAAATAAAACAAACTAGGTTAACCTTCTTTCGTAAGATCTTTGTGCTCTCTTGGCCTAGTGTTACATGTAAACGAATTGATGTATGCGATGAATGATCATCGCCTTTGTTTTCTTTTCCTTGACTTGCACGCTCAAAGCACAATAAAATAGTTCATCTCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3313#0 GACGAGACAAGGGGCACTATGACTGGATTTTATGGAAATTACATGAAAAAACTACTTAAA 60
consensus_3313#1 ------------------------------------------------------------
consensus_3313#0 CCTTTTAACAAGGTGCTCATAAATATAGTCCTTGAAATATGTTTAGTCTTGAAGCCAACT 120
consensus_3313#1 ----------------------------------------------------------CT 2
**
consensus_3313#0 GTAGGTTTTAGATGGTTATTAGAGT-GCTATATTTTTATACTACCTGATGGAATTCTGAC 179
consensus_3313#1 CCTCGTCCCTCTTGCCCCCCTGACCCGCCGCGTCCGCCATGGCCCAGCCCGCCTTCCTCT 62
** ** ** ** * ** * * ***
consensus_3313#0 TTGTTCTTAACTTCTGTAGATGCACAGTAATAATCTGAGCTGGCTTTTAAACATTAAAAA 239
consensus_3313#1 CCGCCCTCCGCTCCCGCCTCCGCTCC-CCGCAGCC---GCAGGCGCCGGCGCTCCCCCAC 118
* ** ** * * ** * * * ** *** * *
consensus_3313#0 CATAAACCTCTCCTAGAAGGAGAATTCTTAGTAGAACTATACTTTCTGAAGTAGAGCAAG 299
consensus_3313#1 CTCCAGCCCCCCC---GCCGCGGCTTCCACGTCGAGCTCGGCGCACGCGAG-AAAGCGCT 174
* * ** * ** * * *** ** ** ** * * ** * ***
consensus_3313#0 GACGGAATAGTTGGAATTTTTGCATCATTTTGTCCATCTTATAGCAGCTTGTGCTGATAC 359
consensus_3313#1 TTTGGAGGAGGATACTGCTCTGAAGAGGTTTAA--ATCATATAAGAACA-GTG-TGAAAC 230
*** ** * ** * *** *** **** * * *** *** **
consensus_3313#0 TTGTTGTATTTGATCACTTTGTGCTTTGCGCTGACTGTTGACAATTCTTTTCAATTGTGC 419
consensus_3313#1 AGGTCTCAAAGGTTGGGAATATTCTT---ACCGGC-GTTG----TCCTTTTT-------- 274
** * * * * * *** * * * **** * *****
consensus_3313#0 AGCCTGCGCCTATGAGATCGTTGCACTTGCAAATAGTTAAAAATGAAGGAATGGACACTC 479
consensus_3313#1 -GCCTGCGCCTATGAGATCGTTGCACTGGCAAATAGTTAAATATGAAGGAATGGACACTC 333
************************** ************* ******************
consensus_3313#0 ATGTGATCACTCAAATCCACCAGAAAGTGATTCATCAGCATAAACTGTCATTTTGTCAGC 539
consensus_3313#1 GTGTGATCACTGAAATCCACCAGAAAGTGATTCATCAGCATAAATTGGCATTTTGTCAGC 393
********** ******************************** ** ************
consensus_3313#0 ACTAGTTCTGCACCTCCTGTTTTGATGGTACCATATAAAATAAAACAAACTAGGTTAACC 599
consensus_3313#1 ACTAGTTCTGCACCTCCGGTGTTGATGGTAATATGTAAAATAAAACAAACTAGGTTAACC 453
***************** ** ********* ** *************************
consensus_3313#0 TTCTTTGGCAAGATCTTTGTGCTCTCTTGGCCTAGTGTGACATGTAAACA----GATGTA 655
consensus_3313#1 TTCTTTCGTAAGATCTTTGTGCTCTCTTGGCCTAGTGTTACATGTAAACGAATTGATGTA 513
****** * ***************************** ********** ******
consensus_3313#0 TGCGATGAATGATCATCGCCTTTGNTTTCTTTTCCTTGACTTAGCACGCTCAAAGCTCAA 715
consensus_3313#1 TGCGATGAATGATCATCGCCTTTGTTTTCTTTTCCTTGACTT-GCACGCTCAAAGCACAA 572
************************ ***************** ************* ***
consensus_3313#0 TAAAATGGGTTATTCTCGGGTTTGCTTGCTA 746
consensus_3313#1 TAAAATAGTTCAT-CTCGG------------ 590
****** * * ** *****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||