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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3388#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1719 fasta sequence
[GACCAGCGAGTTCGACAACCAAAAGTGTGCCTTGTCTTCACCCACCCGTGTGGATAAGCACGCTTAAGCTCTTCGAATCCTCTCTCACTTTTCACCCCCGAAAGGTCTGCGAGTTTCGAGAGTTTCCAGAGCTCCCCAACTTTCCATGAACGAAGCGTCACACTAACCTGTCCACTCTTTACGAGAACCCAGTCACTCGCTCTCTCTCTCCGTCGCTCGCTTCACCATGTTCGGAAAACGCTCTTTCGCTAGCTCGAAGGACAAGGACCGTTCAGGCAAGATCACCAAGCAGCCAAAGAGATCGATGCGCGAAGCTTCCAAGCACAAGGCCATGGCCGAGAAGCTGGATGCTCGCAGGGACAGCCCCATGATGGGCGGAGCATCGCCCCAACTAACCGCGGCCATCGTCACGGTCGTCGTTGGCTCCGACCAGCGCATGTTTGCTGCCCACGAAGACGTCCTCTGCCACTCTCCCTACTTTGCGGAACTGTTGCGCAGCCAGTTCTTCGAGTCAACTAACCGCCGCATCGATCTCCCGACAGAAGAGCCTGAGATCTTCAGTTGCATCCTAGAGTATCTGTACAAGGGAGACTACTACCCCTGCCTTGTCCACGACAAGCGCCGCCAAACCTGGATGCTCGAAGGTGCAATTGCATCCCCCGACCCAAACAAACCTGGCGACCGCGCACCCGCTGCTGTCGAGCCTACCCTCTTCCACTCTGGCGTGGGAGACGTCATTCTCCGCGACACAGCAATCTACTGCGCTGCTGATCGTTACGGCCTTGAAGAGCTCAAGAAGCTCTCCCTGCGCAAGCAGGGCCTGCAGAGCGGGATCGAGGTTGGAACCATCTTGCGCAGTGCCCGCTATGCCTACGAGAACACGCCAGATAGCGACTCGCGTCTGCGCGCTCATTACCTCGCTCTGATTATCCGCAGTCGCAAAACCTTTAAGCGTAGTGGAACCATGCAGATGGAGATGGAGATGGGAGGAAAGCTGTTTTTTGACCTGTTCGTGGCAATGTGCAATCACGTCGATGATCTTGTGGATGCGAGCCCCTCTGCTCGCGGCACTCCCAGGACCATCTAAAGACCCGATTGCACGCCCGCTGCTTCCCGTCATTGAACACGCCCGACAAATGCCACACAACACGGAGTCCCTAATCAAGTTGAACCCCCCGAAACTCCGCCTCACCTCAAATTGCCGACAAGCGACCCTAAAACGTGAAAATACTAAAAAAAAAAACACGGAACCGGAGTAGTACGGGTTGATTCCCCTCTCTTTCCCTGCTTTTCCATCGGCGCATGAATGTTGTTGCATCAGTCATCCTCTCTCCTCTTATGCTACTTTAGTCCCTTTCCGTGGTACTTTGGTCACTCCCATCTCCTCTCCTCCCAATAAAAAAAAGGAATAATCGCCCATCAGACCCCCCCTTTTTTTGTTTACGGTATTACGACAACTGCACACTCTACTCTCCTCTCCTGCTTGCGGGAGAGAGTACATTGACGAAACTGGGTTTCTTTCCTTTGTTCTAGGGGACGAAGTGTCTTGTTGTCTACATGCGTGGGGCCTGTAATGGAGAAGAAGGTTGAAGGAAACATTTTTCCTTTGCTCGTTCTTTCGTTCTTTTTGTCTCAAAGCAAAGCCTGGTACCGTTTCTGCTCTTGAATAGGTCAGACTGCGGAGGAATATCTTAGCGGTGGCAATAATGAGAAACTTTC]
[+] EMBL AK109123 [GACCAGCGAGTTCGACAACCAAAAGTGTGCCTTGTCTTCACCCACCCGTGTGGATAAGCACGCTTAAGCTCTTCGAATCCTCTCTCACTTTTCACCCCCGAAAGGTCTGCGAGTTTCGAGAGTTTCCAGAGCTCCCCAACTTTCCATGAACGAAGCGTCACACTAACCTGTCCACTCTTTACGAGAACCCAGTCACTCGCTCTCTCTCTCCGTCGCTCGCTTCACCATGTTCGGAAAACGCTCTTTCGCTAGCTCGAAGGACAAGGACCGTTCAGGCAAGATCACCAAGCAGCCAAAGAGATCGATGCGCGAAGCTTCCAAGCACAAGGCCATGGCCGAGAAGCTGGATGCTCGCAGGGACAGCCCCATGATGGGCGGAGCATCGCCCCAACTAACCGCGGCCATCGTCACGGTCGTCGTTGGCTCCGACCAGCGCATGTTTGCTGCCCACGAAGACGTCCTCTGCCACTCTCCCTACTTTGCGGAACTGTTGCGCAGCCAGTTCTTCGAGTCAACTAACCGCCGCATCGATCTCCCGACAGAAGAGCCTGAGATCTTCAGTTGCATCCTAGAGTATCTGTACAAGGGAGACTACTACCCCTGCCTTGTCCACGACAAGCGCCGCCAAACCTGGATGCTCGAAGGTGCAATTGCATCCCCCGACCCAAACAAACCTGGCGACCGCGCACCCGCTGCTGTCGAGCCTACCCTCTTCCACTCTGGCGTGGGAGACGTCATTCTCCGCGACACAGCAATCTACTGCGCTGCTGATCGTTACGGCCTTGAAGAGCTCAAGAAGCTCTCCCTGCGCAAGCAGGGCCTGCAGAGCGGGATCGAGGTTGGAACCATCTTGCGCAGTGCCCGCTATGCCTACGAGAACACGCCAGATAGCGACTCGCGTCTGCGCGCTCATTACCTCGCTCTGATTATCCGCAGTCGCAAAACCTTTAAGCGTAGTGGAACCATGCAGATGGAGATGGAGATGGGAGGAAAGCTGTTTTTTGACCTGTTCGTGGCAATGTGCAATCACGTCGATGATCTTGTGGATGCGAGCCCCTCTGCTCGCGGCACTCCCAGGACCATCTAAAGACCCGATTGCACGCCCGCTGCTTCCCGTCATTGAACACGCCCGACAAATGCCACACAACACGGAGTCCCTAATCAAGTTGAACCCCCCGAAACTCCGCCTCACCTCAAATTGCCGACAAGCGACCCTAAAACGTGAAAATACTAAAAAAAAAAACACGGAACCGGAGTAGTACGGGTTGATTCCCCTCTCTTTCCCTGCTTTTCCATCGGCGCATGAATGTTGTTGCATCAGTCATCCTCTCTCCTCTTATGCTACTTTAGTCCCTTTCCGTGGTACTTTGGTCACTCCCATCTCCTCTCCTCCCAATAAAAAAAAGGAATAATCGCCCATCAGACCCCCCCTTTTTTTGTTTACGGTATTACGACAACTGCACACTCTACTCTCCTCTCCTGCTTGCGGGAGAGAGTACATTGACGAAACTGGGTTTCTTTCCTTTGTTCTAGGGGACGAAGTGTCTTGTTGTCTACATGCGTGGGGCCTGTAATGGAGAAGAAGGTTGAAGGAAACATTTTTCCTTTGCTCGTTCTTTCGTTCTTTTTGTCTCAAAGCAAAGCCTGGTACCGTTTCTGCTCTTGAATAGGTCAGACTGCGGAGGAATATCTTAGCGGTGGCAATAATGAGAAACTTTC]
consensusID : consensus_3388#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1385 fasta sequence
[GGATGCGCGCAAGGATAGCCCCATGATGGAGTCGACGTCACCAAGTCTGACCTCCGCCATCGTGACAGTCGTCGTGGGTCCCGACCAGCGACTGTTTGCTGCGCATGAAGACGTCCTGTCACATGCCCCGTTCTTCGCGCAAGCGTTGCACGGCCAGTTCTTCGAATCCACTACTCGACGCATCGATCTGCCTACAGAGGAGCCTGAGGTCTTCTCCTGCGTCCTCGAGTATCTGTACAAGGGTGACTACTACCCCCCGCTTGCTTCATGATAAGCGCCGTCAGACCTGGATGCTTGAGGGTGCAATGACCTCGCCCGACCCCAATAAAACCAGCGACCGCGCTGCCGCAGTCGAGCCAACCTTTTTCCATACCGGTGTGGGTGACGTTATCCTTCGTGACACAGCCGTGTATTGCGCTGCCGACCGCTACGGCCTCGAGGAGCTCAAGAAGCTCTCTCTGCGCAAGCAGGGCCTGCAGAGCGGGATCGAAGTCGGCGTGATCCTGCGCAGTGCTCGGTATGCCTACGAGAACACACCGGACAATGACTCGCGGCTGCGCGCTCATTACCTCGCTTTGATTATCCGCAGCCGGAAAACATTCAAGCGTAGTGGAACCATGCAGATGGAGATGGAGATGGGGGGAAAACTGTTCTTTGACTTGTTCGTGGCGATGTGCAACCATGTCGATGATCTTGTGGACGCGAGCCCATCCGCTCGCGGCACTCCTAGGACCATCTAAGGTTGCAACGACCACTTCTCGTCAAGCACAACTGCAAACACACCACACACCACACAACTTTGGAGTACCATTAATTTGATCCACTCTCAACTCCCGACAAACACAAATTGCCAACAAGCGACAATGCTCACGCAACTCGCTCATCGTCACTCAACGTAAACAACAAAACCCAGAAAAAGACGGAAAGGACACGACTCCTCCCCTGATTTACTCGGCGTATCTCGACGGCCCGGCTGGTTGCAATTATCCTTACCCTCCCCTCATCTTTACACGCGCTTCTTCTTCTCCTCTCTCCTTTACCGTGTTTGCTCACCCCTGTCACGTTTCTAATGTTTCTTGAAAAATAGCGTTGCAACGTTCTTCTCACACCACCCCTCTCTGCTTGCGGAGAGAGTACATGTCTACGACGAGACTGCGTTTCCTTTGTTCATATGTGCGCGTTGGTGGATGAAGTGAGAACTGTTGTAGTTATAGTAAGGGATATACGGACATTCATTTTCAGATGTATGGTTCTGCGCTGGTCACGATGACCGCGCTGGAAGGCTCTTCCATTGATGGAAAGGCCGAAGCGGAAAGACTGACTGAAACCACTCGAATGGTCAGACTAGCTGCGGAGGATTTTAGTGGCGCGCAATGAGAGATTTA]
[+] EMBL AK109073 [GGATGCGCGCAAGGATAGCCCCATGATGGAGTCGACGTCACCAAGTCTGACCTCCGCCATCGTGACAGTCGTCGTGGGTCCCGACCAGCGACTGTTTGCTGCGCATGAAGACGTCCTGTCACATGCCCCGTTCTTCGCGCAAGCGTTGCACGGCCAGTTCTTCGAATCCACTACTCGACGCATCGATCTGCCTACAGAGGAGCCTGAGGTCTTCTCCTGCGTCCTCGAGTATCTGTACAAGGGTGACTACTACCCCCCGCTTGCTTCATGATAAGCGCCGTCAGACCTGGATGCTTGAGGGTGCAATGACCTCGCCCGACCCCAATAAAACCAGCGACCGCGCTGCCGCAGTCGAGCCAACCTTTTTCCATACCGGTGTGGGTGACGTTATCCTTCGTGACACAGCCGTGTATTGCGCTGCCGACCGCTACGGCCTCGAGGAGCTCAAGAAGCTCTCTCTGCGCAAGCAGGGCCTGCAGAGCGGGATCGAAGTCGGCGTGATCCTGCGCAGTGCTCGGTATGCCTACGAGAACACACCGGACAATGACTCGCGGCTGCGCGCTCATTACCTCGCTTTGATTATCCGCAGCCGGAAAACATTCAAGCGTAGTGGAACCATGCAGATGGAGATGGAGATGGGGGGAAAACTGTTCTTTGACTTGTTCGTGGCGATGTGCAACCATGTCGATGATCTTGTGGACGCGAGCCCATCCGCTCGCGGCACTCCTAGGACCATCTAAGGTTGCAACGACCACTTCTCGTCAAGCACAACTGCAAACACACCACACACCACACAACTTTGGAGTACCATTAATTTGATCCACTCTCAACTCCCGACAAACACAAATTGCCAACAAGCGACAATGCTCACGCAACTCGCTCATCGTCACTCAACGTAAACAACAAAACCCAGAAAAAGACGGAAAGGACACGACTCCTCCCCTGATTTACTCGGCGTATCTCGACGGCCCGGCTGGTTGCAATTATCCTTACCCTCCCCTCATCTTTACACGCGCTTCTTCTTCTCCTCTCTCCTTTACCGTGTTTGCTCACCCCTGTCACGTTTCTAATGTTTCTTGAAAAATAGCGTTGCAACGTTCTTCTCACACCACCCCTCTCTGCTTGCGGAGAGAGTACATGTCTACGACGAGACTGCGTTTCCTTTGTTCATATGTGCGCGTTGGTGGATGAAGTGAGAACTGTTGTAGTTATAGTAAGGGATATACGGACATTCATTTTCAGATGTATGGTTCTGCGCTGGTCACGATGACCGCGCTGGAAGGCTCTTCCATTGATGGAAAGGCCGAAGCGGAAAGACTGACTGAAACCACTCGAATGGTCAGACTAGCTGCGGAGGATTTTAGTGGCGCGCAATGAGAGATTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3388#0 GACCAGCGAGTTCGACAACCAAAAGTGTGCCTTGTCTTCACCCACCCGTGTGGATAAGCA 60
consensus_3388#1 ------------------------------------------------------------
consensus_3388#0 CGCTTAAGCTCTTCGAATCCTCTCTCACTTTTCACCCCCGAAAGGTCTGCGAGTTTCGAG 120
consensus_3388#1 ------------------------------------------------------------
consensus_3388#0 AGTTTCCAGAGCTCCCCAACTTTCCATGAACGAAGCGTCACACTAACCTGTCCACTCTTT 180
consensus_3388#1 ------------------------------------------------------------
consensus_3388#0 ACGAGAACCCAGTCACTCGCTCTCTCTCTCCGTCGCTCGCTTCACCATGTTCGGAAAACG 240
consensus_3388#1 ------------------------------------------------------------
consensus_3388#0 CTCTTTCGCTAGCTCGAAGGACAAGGACCGTTCAGGCAAGATCACCAAGCAGCCAAAGAG 300
consensus_3388#1 ------------------------------------------------------------
consensus_3388#0 ATCGATGCGCGAAGCTTCCAAGCACAAGGCCATGGCCGAGAAGCTGGATGCTCGCAGGGA 360
consensus_3388#1 ---------------------------------------------GGATGCGCGCAAGGA 15
****** **** ***
consensus_3388#0 CAGCCCCATGATGGGCGGAGCATCGCCCCAACTAACCGCGGCCATCGTCACGGTCGTCGT 420
consensus_3388#1 TAGCCCCATGATGGAGTCGACGTCACCAAGTCTGACCTCCGCCATCGTGACAGTCGTCGT 75
************* * ** ** ** *** * ******** ** ********
consensus_3388#0 TGGCTCCGACCAGCGCATGTTTGCTGCCCACGAAGACGTCCTCTGCCACTCTCCCTACTT 480
consensus_3388#1 GGGTCCCGACCAGCGACTGTTTGCTGCGCATGAAGACGTCCTGTCACATGCCCCGTTCTT 135
** ********** ********** ** *********** * ** * ** * ***
consensus_3388#0 TGCGGAACTGTTGCGCAGCCAGTTCTTCGAGTCAACTAACCGCCGCATCGATCTCCCGAC 540
consensus_3388#1 CGCGCAAGCGTTGCACGGCCAGTTCTTCGAATCCACTACTCGACGCATCGATCTGCCTAC 195
*** ** ***** * ************* ** **** ** *********** ** **
consensus_3388#0 AGAAGAGCCTGAGATCTTCAGTTGCATCCTAGAGTATCTGTACAAGGGAGACTACTACCC 600
consensus_3388#1 AGAGGAGCCTGAGGTCTTCTCCTGCGTCCTCGAGTATCTGTACAAGGGTGACTACTACCC 255
*** ********* ***** *** **** ***************** ***********
consensus_3388#0 CTGCCTTG-TCCACGACAAGCGCCGCCAAACCTGGATGCTCGAAGGTGCAATTGCATCCC 659
consensus_3388#1 CCCGCTTGCTTCATGATAAGCGCCGTCAGACCTGGATGCTTGAGGGTGCAATGACCTCGC 315
* **** * ** ** ******** ** *********** ** ******** * ** *
consensus_3388#0 CCGACCCAAACAAACCTGGCGACCGCGCACCCGCTGCTGTCGAGCCTACCCTCTTCCACT 719
consensus_3388#1 CCGACCCCAATAAAACCAGCGACCGCGC---TGCCGCAGTCGAGCCAACCTTTTTCCATA 372
******* ** *** * ********** ** ** ******** *** * *****
consensus_3388#0 CTGGCGTGGGAGACGTCATTCTCCGCGACACAGCAATCTACTGCGCTGCTGATCGTTACG 779
consensus_3388#1 CCGGTGTGGGTGACGTTATCCTTCGTGACACAGCCGTGTATTGCGCTGCCGACCGCTACG 432
* ** ***** ***** ** ** ** ******** * ** ******** ** ** ****
consensus_3388#0 GCCTTGAAGAGCTCAAGAAGCTCTCCCTGCGCAAGCAGGGCCTGCAGAGCGGGATCGAGG 839
consensus_3388#1 GCCTCGAGGAGCTCAAGAAGCTCTCTCTGCGCAAGCAGGGCCTGCAGAGCGGGATCGAAG 492
**** ** ***************** ******************************** *
consensus_3388#0 TTGGAACCATCTTGCGCAGTGCCCGCTATGCCTACGAGAACACGCCAGATAGCGACTCGC 899
consensus_3388#1 TCGGCGTGATCCTGCGCAGTGCTCGGTATGCCTACGAGAACACACCGGACAATGACTCGC 552
* ** *** ********** ** ***************** ** ** * *******
consensus_3388#0 GTCTGCGCGCTCATTACCTCGCTCTGATTATCCGCAGTCGCAAAACCTTTAAGCGTAGTG 959
consensus_3388#1 GGCTGCGCGCTCATTACCTCGCTTTGATTATCCGCAGCCGGAAAACATTCAAGCGTAGTG 612
* ********************* ************* ** ***** ** **********
consensus_3388#0 GAACCATGCAGATGGAGATGGAGATGGGAGGAAAGCTGTTTTTTGACCTGTTCGTGGCAA 1019
consensus_3388#1 GAACCATGCAGATGGAGATGGAGATGGGGGGAAAACTGTTCTTTGACTTGTTCGTGGCGA 672
**************************** ***** ***** ****** ********** *
consensus_3388#0 TGTGCAATCACGTCGATGATCTTGTGGATGCGAGCCCCTCTGCTCGCGGCACTCCCAGGA 1079
consensus_3388#1 TGTGCAACCATGTCGATGATCTTGTGGACGCGAGCCCATCCGCTCGCGGCACTCCTAGGA 732
******* ** ***************** ******** ** ************** ****
consensus_3388#0 CCATCTAAAGACCCGATTGCACGCCCGCTGCTTCCCGTCATTGAACACGCCCGACAAATG 1139
consensus_3388#1 CCATCTAAGGTTGCAACGAC-CACTTCTCGTCAAGCACAACTGCAAACACAC--CACACA 789
******** * * * * * * * * * ** * ** * * ** *
consensus_3388#0 CCACACAACAC-GGAGTCCCTAATCAAGTTGAACCCCCCGAAACTCCGCCTCACCTCAAA 1198
consensus_3388#1 CCACACAACTTTGGAGTACC--ATTAATTTGATCCACTCTCAACTCCCGACAAACACAAA 847
********* ***** ** ** ** **** ** * * ****** * * ****
consensus_3388#0 TTGCCGACAAGCGAC------CCTAAAACGTGAAAAT----ACT------AAAAAAAAAA 1242
consensus_3388#1 TTGCCAACAAGCGACAATGCTCACGCAACTCGCTCATCGTCACTCAACGTAAACAACAAA 907
***** ********* * *** * ** *** *** ** ***
consensus_3388#0 ACACGGAACCGGAGTAGTACGGGTTGATTCCCCTCTC---TTTCCCTGCTTTTC-CATCG 1298
consensus_3388#1 ACCCAGAAAAAGACGGAAAGGACACGACTCCTCCCCTGATTTACTCGGCGTATCTCGACG 967
** * *** ** * * ** *** * * ** * * ** * ** * **
consensus_3388#0 GCGCA--TGAATGTTGTTGCATCAGTCATCCTCTCTCCTCT---TATGCTACTTTAGTCC 1353
consensus_3388#1 GCCCGGCTGGTTGCAATTATCCTTACCCTCCCCTCATCTTTACACGCGCTTCTTCTTCTC 1027
** * ** ** ** * *** *** ** * *** *** *
consensus_3388#0 CTTTCCGTGGTAC----TTTGGTCACTCCCATCTCCTCTCC----TCCCAATAAAAAAAA 1405
consensus_3388#1 CTCTCTCCTTTACCGTGTTTGCTCACCCCTGTCACGTTTCTAATGTTTCTTGAAAAATAG 1087
** ** *** **** **** ** ** * * ** * * ***** *
consensus_3388#0 GGAATAATCGCCCATCAGACCCCCCCTTTTTTTGTTTACGGTATTACGACAACTGCAC-A 1464
consensus_3388#1 CGTTGCAACGTTCTTCTCACACCACCCCTCTCTGCTTGCGGAGAGAGTACATGTCTACGA 1147
* * ** * ** ** ** ** * * ** ** *** * *** * ** *
consensus_3388#0 CTCTACT-CTCCTCTCCTGCTTGCGGGAGAGAGTACATTGACGAAACTGGGTTTCTTTCC 1523
consensus_3388#1 CGAGACTGCGTTTCCTTTGTTCATATGTGCGCGTTGGTGGATGAAGTGAGAACTGTTGTA 1207
* *** * ** ** * * * * ** * ** *** * * **
consensus_3388#0 TTTGTTCTAGGGGACGAAGTGTCTTGTTGTCTACATGCGTGGGGC-CTGTAATGGAGAAG 1582
consensus_3388#1 GTTATAGTAAGGGATATACGGACAT-TCATTTTCAGATGTATGGTTCTGCGCTGGTCACG 1266
** * ** **** * * * * * * * ** ** ** *** *** * *
consensus_3388#0 AAGGTTGAAG-GAAACATTTTTCCTTTGCTCGTTCTTTCGTTCTTTTTGTCTCAAAGCAA 1641
consensus_3388#1 ATGACCGCGCTGGAAGGCTCTTCCATTGATGGAAAGGCCGA------------AGCGGAA 1314
* * * * ** * **** *** * * ** * * **
consensus_3388#0 AGCCTGGTACCGTTTCTGCTCTTGAATAGGTCAGACT-GCGGAGGAATATCTTAGCGGTG 1700
consensus_3388#1 AGACTG--ACTGAAACCACTC--GAAT-GGTCAGACTAGCTGCGGAGGATTTTAGTGGCG 1369
** *** ** * * *** **** ********* ** * *** ** **** ** *
consensus_3388#0 GCAATAATGAGAAACTTTC 1719
consensus_3388#1 C--GCAATGAGAGATTTA- 1385
******* * **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||