cluster # 3389

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Oryza sativa
cluster # 3389 cluster # 3389 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3389#0 length = 774 sequences # 1

consensus_3389#1 length = 642 sequences # 1

consensusID : consensus_3389#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 774
fasta sequence

                              [AGGGGAAGAAAATTCTATGAACCTTTCCGTTTTTCCTTAAGTTCAAGTTTGACGAGAGTAATATTCTACAACTAACAACTCATTTATTTTGAGACCGACCCACTTCCTATCCAGGATTTTTTTTACTAGTCCTTTATATTGCAATGTGTCAATCGTCAAATGCTTTGGCAATTTCCCCGGGTCGGATGAAGCAATAGAATTTTGAACCAGACGTTTTGATCTTTGGTTATCCTTCGTAGTAATAATATCTCGGGGTTTGCAACGAAAACTTGGTATATCGACTATACGACCATTAACTAAAATATGTCTATGGTTAACTAATTGCCGGGCCTCGGGAATGGTTGAAGCCATACCTAATCGAAAAAGGATATTATCCAAACGCATTTCAAGTAATTGTAGTAAAACCTGACCTGTTGAACTTTTTGCTTTTCCAGCGATATGTACATATCTAAGTAATTGTCGTTCTGTCAGACCATAATGAAAACGCAATTTCTGTTTTTCTTGAAGACGAATACGATATTGTTCTTTTTTCCCAGAATGGAATTTCTTTTTCAGATTACTTCCGGATTTAGGGTGTTTTTCTAGTGAGTCCTGGTAAAGCTCCCAGACGGCGTATTTTTTTTAAAACGAGGTCCTCGATAACGGGACATGAAGACTCCTTTTTTTATTGAAATTTCATTTTACACAATTAATTTCATTGNATTTACATTACAGGAATACATTCGAAATTAAAACTGAATTAAAGTAAAGGATAAACAGAGTAAAATCTACCTA]

[+] EMBL CA767307             [AGGGGAAGAAAATTCTATGAACCTTTCCGTTTTTCCTTAAGTTCAAGTTTGACGAGAGTAATATTCTACAACTAACAACTCATTTATTTTGAGACCGACCCACTTCCTATCCAGGATTTTTTTTACTAGTCCTTTATATTGCAATGTGTCAATCGTCAAATGCTTTGGCAATTTCCCCGGGTCGGATGAAGCAATAGAATTTTGAACCAGACGTTTTGATCTTTGGTTATCCTTCGTAGTAATAATATCTCGGGGTTTGCAACGAAAACTTGGTATATCGACTATACGACCATTAACTAAAATATGTCTATGGTTAACTAATTGCCGGGCCTCGGGAATGGTTGAAGCCATACCTAATCGAAAAAGGATATTATCCAAACGCATTTCAAGTAATTGTAGTAAAACCTGACCTGTTGAACTTTTTGCTTTTCCAGCGATATGTACATATCTAAGTAATTGTCGTTCTGTCAGACCATAATGAAAACGCAATTTCTGTTTTTCTTGAAGACGAATACGATATTGTTCTTTTTTCCCAGAATGGAATTTCTTTTTCAGATTACTTCCGGATTTAGGGTGTTTTTCTAGTGAGTCCTGGTAAAGCTCCCAGACGGCGTATTTTTTTTAAAACGAGGTCCTCGATAACGGGACATGAAGACTCCTTTTTTTATTGAAATTTCATTTTACACAATTAATTTCATTGNATTTACATTACAGGAATACATTCGAAATTAAAACTGAATTAAAGTAAAGGATAAACAGAGTAAAATCTACCTA]




>consensus_3389#0
AGGGGAAGAAAATTCTATGAACCTTTCCGTTTTTCCTTAAGTTCAAGTTTGACGAGAGTA
ATATTCTACAACTAACAACTCATTTATTTTGAGACCGACCCACTTCCTATCCAGGATTTT
TTTTACTAGTCCTTTATATTGCAATGTGTCAATCGTCAAATGCTTTGGCAATTTCCCCGG
GTCGGATGAAGCAATAGAATTTTGAACCAGACGTTTTGATCTTTGGTTATCCTTCGTAGT
AATAATATCTCGGGGTTTGCAACGAAAACTTGGTATATCGACTATACGACCATTAACTAA
AATATGTCTATGGTTAACTAATTGCCGGGCCTCGGGAATGGTTGAAGCCATACCTAATCG
AAAAAGGATATTATCCAAACGCATTTCAAGTAATTGTAGTAAAACCTGACCTGTTGAACT
TTTTGCTTTTCCAGCGATATGTACATATCTAAGTAATTGTCGTTCTGTCAGACCATAATG
AAAACGCAATTTCTGTTTTTCTTGAAGACGAATACGATATTGTTCTTTTTTCCCAGAATG
GAATTTCTTTTTCAGATTACTTCCGGATTTAGGGTGTTTTTCTAGTGAGTCCTGGTAAAG
CTCCCAGACGGCGTATTTTTTTTAAAACGAGGTCCTCGATAACGGGACATGAAGACTCCT
TTTTTTATTGAAATTTCATTTTACACAATTAATTTCATTGNATTTACATTACAGGAATAC
ATTCGAAATTAAAACTGAATTAAAGTAAAGGATAAACAGAGTAAAATCTACCTA

consensusID : consensus_3389#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 642
fasta sequence

                              [CGTTTCTGTTAATTCACCACCGACCACAATGTATCAAATCAAATAGATTTCAGCAATAAGACTTTTATTTGATAGAAATTCATTATTAAAAATTAATTACTTTGGTACGGCAATAAAAAAAAATCCTACTGTAGATCCATTTGTGATACATGAATGAGAAAATACGGATTAAGGCCCTTCCGCGAAAAGGGGAAATAATTTTATGAACCTTTCTTATTTTCGTTAGGTTCAAGTCTGACGAGAATAATATTCTACGACTAAGAACTCATTTATTTTCACCATTTACTAAATATTATTTTATTTACTAGTCCTTTATATTGGAATGAGTCACTAGTCAAATGTTTTGGCAATTCCTCGTGGGCGGATGATGCAATAGAATTTTGAATCAGCGTTTTGATCTTTGGTTATCCTTCATAGTAATAATATCTCGGAGTTTGCAACGAAAACTTAGTATATCGACTAGACGACCGTGAAATAAAATATGTCTATCTATGGTTAACTAATTGCCTGGCTCCGGGAATGGTCGAAGCCATACCCAATCGAAAAAGGATGTTATCCAAACGCATTTCAAGTAGTTGTAGTCAAACCCGACCTGTTGACCCTTTTGCTTTTCCAGCAATATGTACATATCTAAGTAATTGT]

[+] EMBL CA998905             [CGTTTCTGTTAATTCACCACCGACCACAATGTATCAAATCAAATAGATTTCAGCAATAAGACTTTTATTTGATAGAAATTCATTATTAAAAATTAATTACTTTGGTACGGCAATAAAAAAAAATCCTACTGTAGATCCATTTGTGATACATGAATGAGAAAATACGGATTAAGGCCCTTCCGCGAAAAGGGGAAATAATTTTATGAACCTTTCTTATTTTCGTTAGGTTCAAGTCTGACGAGAATAATATTCTACGACTAAGAACTCATTTATTTTCACCATTTACTAAATATTATTTTATTTACTAGTCCTTTATATTGGAATGAGTCACTAGTCAAATGTTTTGGCAATTCCTCGTGGGCGGATGATGCAATAGAATTTTGAATCAGCGTTTTGATCTTTGGTTATCCTTCATAGTAATAATATCTCGGAGTTTGCAACGAAAACTTAGTATATCGACTAGACGACCGTGAAATAAAATATGTCTATCTATGGTTAACTAATTGCCTGGCTCCGGGAATGGTCGAAGCCATACCCAATCGAAAAAGGATGTTATCCAAACGCATTTCAAGTAGTTGTAGTCAAACCCGACCTGTTGACCCTTTTGCTTTTCCAGCAATATGTACATATCTAAGTAATTGT]




>consensus_3389#1
CGTTTCTGTTAATTCACCACCGACCACAATGTATCAAATCAAATAGATTTCAGCAATAAG
ACTTTTATTTGATAGAAATTCATTATTAAAAATTAATTACTTTGGTACGGCAATAAAAAA
AAATCCTACTGTAGATCCATTTGTGATACATGAATGAGAAAATACGGATTAAGGCCCTTC
CGCGAAAAGGGGAAATAATTTTATGAACCTTTCTTATTTTCGTTAGGTTCAAGTCTGACG
AGAATAATATTCTACGACTAAGAACTCATTTATTTTCACCATTTACTAAATATTATTTTA
TTTACTAGTCCTTTATATTGGAATGAGTCACTAGTCAAATGTTTTGGCAATTCCTCGTGG
GCGGATGATGCAATAGAATTTTGAATCAGCGTTTTGATCTTTGGTTATCCTTCATAGTAA
TAATATCTCGGAGTTTGCAACGAAAACTTAGTATATCGACTAGACGACCGTGAAATAAAA
TATGTCTATCTATGGTTAACTAATTGCCTGGCTCCGGGAATGGTCGAAGCCATACCCAAT
CGAAAAAGGATGTTATCCAAACGCATTTCAAGTAGTTGTAGTCAAACCCGACCTGTTGAC
CCTTTTGCTTTTCCAGCAATATGTACATATCTAAGTAATTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3389#0      ------------------------------------------------------------
consensus_3389#1      CGTTTCTGTTAATTCACCACCGACCACAATGTATCAAATCAAATAGATTTCAGCAATAAG 60
                                                                                  

consensus_3389#0      ------------------------------------------------------------
consensus_3389#1      ACTTTTATTTGATAGAAATTCATTATTAAAAATTAATTACTTTGGTACGGCAATAAAAAA 120
                                                                                  

consensus_3389#0      ------------------------------------------------------------
consensus_3389#1      AAATCCTACTGTAGATCCATTTGTGATACATGAATGAGAAAATACGGATTAAGGCCCTTC 180
                                                                                  

consensus_3389#0      ------AGGGGAAGAAAATTCTATGAACCTTTCCGTTTTTCCTTAAGTTCAAGTTTGACG 54
consensus_3389#1      CGCGAAAAGGGGAAATAATTTTATGAACCTTTCTTATTTTCGTTAGGTTCAAGTCTGACG 240
                            * *** * * **** ************   ***** *** ******** *****

consensus_3389#0      AGAGTAATATTCTACAACTAACAACTCATTTATTTTGAGACCGACCCACTTCCTATCCAG 114
consensus_3389#1      AGAATAATATTCTACGACTAAGAACTCATTTATTTTCA-------CCATTTACTAAATAT 293
                      *** *********** ***** ************** *       *** ** ***   * 

consensus_3389#0      GATTTTTTTTACTAGTCCTTTATATTGCAATGTGTCAATCGTCAAATGCTTTGGCAATTT 174
consensus_3389#1      TATTTTATTTACTAGTCCTTTATATTGGAATGAGTCACTAGTCAAATGTTTTGGCAATTC 353
                       ***** ******************** **** **** * ******** ********** 

consensus_3389#0      CCCCGGGTCGGATGAAGCAATAGAATTTTGAACCAGACGTTTTGATCTTTGGTTATCCTT 234
consensus_3389#1      CTCGTGGGCGGATGATGCAATAGAATTTTGAATCAG-CGTTTTGATCTTTGGTTATCCTT 412
                      * *  ** ******* **************** *** ***********************

consensus_3389#0      CGTAGTAATAATATCTCGGGGTTTGCAACGAAAACTTGGTATATCGACTATACGACCATT 294
consensus_3389#1      CATAGTAATAATATCTCGGAGTTTGCAACGAAAACTTAGTATATCGACTAGACGACCGTG 472
                      * ***************** ***************** ************ ****** * 

consensus_3389#0      AACTAAAATATGTCTAT----GGTTAACTAATTGCCGGGCCTCGGGAATGGTTGAAGCCA 350
consensus_3389#1      AAATAAAATATGTCTATCTATGGTTAACTAATTGCCTGGCTCCGGGAATGGTCGAAGCCA 532
                      ** **************    *************** ***  ********** *******

consensus_3389#0      TACCTAATCGAAAAAGGATATTATCCAAACGCATTTCAAGTAATTGTAGTAAAACCTGAC 410
consensus_3389#1      TACCCAATCGAAAAAGGATGTTATCCAAACGCATTTCAAGTAGTTGTAGTCAAACCCGAC 592
                      **** ************** ********************** ******* ***** ***

consensus_3389#0      CTGTTGAACTTTTTGCTTTTCCAGCGATATGTACATATCTAAGTAATTGTCGTTCTGTCA 470
consensus_3389#1      CTGTTGACCCTTTTGCTTTTCCAGCAATATGTACATATCTAAGTAATTGT---------- 642
                      ******* * *************** ************************          

consensus_3389#0      GACCATAATGAAAACGCAATTTCTGTTTTTCTTGAAGACGAATACGATATTGTTCTTTTT 530
consensus_3389#1      ------------------------------------------------------------
                                                                                  

consensus_3389#0      TCCCAGAATGGAATTTCTTTTTCAGATTACTTCCGGATTTAGGGTGTTTTTCTAGTGAGT 590
consensus_3389#1      ------------------------------------------------------------
                                                                                  

consensus_3389#0      CCTGGTAAAGCTCCCAGACGGCGTATTTTTTTTAAAACGAGGTCCTCGATAACGGGACAT 650
consensus_3389#1      ------------------------------------------------------------
                                                                                  

consensus_3389#0      GAAGACTCCTTTTTTTATTGAAATTTCATTTTACACAATTAATTTCATTGNATTTACATT 710
consensus_3389#1      ------------------------------------------------------------
                                                                                  

consensus_3389#0      ACAGGAATACATTCGAAATTAAAACTGAATTAAAGTAAAGGATAAACAGAGTAAAATCTA 770
consensus_3389#1      ------------------------------------------------------------
                                                                                  

consensus_3389#0      CCTA 774
consensus_3389#1      ----