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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3394#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 797 fasta sequence
[TACACTTCATTTTCTTTGCTTGCTTCTCCCCACCACTTCATAATGAGGCGCCGTAGTGTAGCCATGCAAATTGCTTTGGAGTCATCGTCGTCGGATGATGACGATGTGTTTATTATGGCAACAACAGTCATGATAGAGCATCACCAACGAGCCCAACGCAATGTAGGAGGTAGAAGAGGTTCTATTTCGGGGCATGTAGTGATTAATCGCGATAGAACGGAAAGACTTGCAAGATTAATGAGGGACTATNTTTTGTGATAATCCTACATATGGTCCGGTTTTGTTTCGTCGAAGGTTTAGAATGGCTCAATCTTTGTATATGCGCATTGTGCATGCAGTACAAAATCATGATTATTATTTTGTTCAAAGGAGAAATGCTGCTGGAGTACTTGGACTACATCCATTGCAAAAGATTACTGCTGCTTTACAAATGCTTGCTTTTGGTGTGCCCGCTGATTTTTTGGATGATTATCTTGGTATGGCTGAGAGCACCATTTTGTCAAGTCTTAGAAGGTTTGTGAGAGCTACTGTTGAAATATTTGGGGATGAATATTTAAGGTCTCCCAATTCAAGGTGATACTAATAGATTGCTTGCAATTGGAGAACAAAAAGGCTTTCCAGGTATGCTTGGGAACATAGATTGCATGCACTGGGAAGTGGAAAAACTGTCCAACAGCTTGGTCTGGCATGTACCAAGGGCCATGNTCATGAGCCTACTATAANACTANAAAGTTGGTTGCTTCGAAAAGATCTTTTGGATTTGGCATGCTTTTTTTGGATTACCCTGGNTCTCACAA]
[+] EMBL CA767374 [TACACTTCATTTTCTTTGCTTGCTTCTCCCCACCACTTCATAATGAGGCGCCGTAGTGTAGCCATGCAAATTGCTTTGGAGTCATCGTCGTCGGATGATGACGATGTGTTTATTATGGCAACAACAGTCATGATAGAGCATCACCAACGAGCCCAACGCAATGTAGGAGGTAGAAGAGGTTCTATTTCGGGGCATGTAGTGATTAATCGCGATAGAACGGAAAGACTTGCAAGATTAATGAGGGACTATNTTTTGTGATAATCCTACATATGGTCCGGTTTTGTTTCGTCGAAGGTTTAGAATGGCTCAATCTTTGTATATGCGCATTGTGCATGCAGTACAAAATCATGATTATTATTTTGTTCAAAGGAGAAATGCTGCTGGAGTACTTGGACTACATCCATTGCAAAAGATTACTGCTGCTTTACAAATGCTTGCTTTTGGTGTGCCCGCTGATTTTTTGGATGATTATCTTGGTATGGCTGAGAGCACCATTTTGTCAAGTCTTAGAAGGTTTGTGAGAGCTACTGTTGAAATATTTGGGGATGAATATTTAAGGTCTCCCAATTCAAGGTGATACTAATAGATTGCTTGCAATTGGAGAACAAAAAGGCTTTCCAGGTATGCTTGGGAACATAGATTGCATGCACTGGGAAGTGGAAAAACTGTCCAACAGCTTGGTCTGGCATGTACCAAGGGCCATGNTCATGAGCCTACTATAANACTANAAAGTTGGTTGCTTCGAAAAGATCTTTTGGATTTGGCATGCTTTTTTTGGATTACCCTGGNTCTCACAA]
consensusID : consensus_3394#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 747 fasta sequence
[CTTAGTTTTCTTTGCTTGCTTCTCACCACCACTTCATAATGAGGCGCCGNAGTGTAGCCCTGCAAATTGCTTTGGAGTATCGNCGNCGGATGATGACGATGTGTTTATTATGGCAACAACAGNCATGATAGAGCATCACCAACGAGCCCAACGCANTGTAGGAGGTAGAAGAGGTTCTATTTCGGGGCATGNAGNGATTAATCGCGATAGAACGNAAAGACTTGCAAGATTAATGANGGACTATCTTTTGTGATAATCCTACATATGGTCCGGTTTTGTTTCGTCGAAGGCTTAGAATGGCTCAATCTTTGTATATGCNCATTGTGCATGCAGTACAAAATCATGATTATTATTTTGCTCAAAGGAGAAATGCTGCTGGAGNACTTGGACTACATTACATTGCAAAAGATTACTGCTGCTTTACNAATGCTTGCTTTTGGTGCGCCCGCTGATTCTTTGGATGATTATCTTGGTATGGCTGANAGCACCATTTTGNCAAGTCTTAGAAGGCCNNGTGAGAGCTATTGCTGAAATATTTCNCNNATGAATCTNNAAGGTCTCCCNATCAANATGATACCTAATAGATTGCTTGCNATNTGNAANAACAANNAGNCTTTCCANGTNATGCTTTGGCTAACNTAGGATTGCATGCACTGNGAANCTGNCAAAACNGTTCCNACAGCNNGTTCNGGCATGTTCCNAAGGCCCCCGGNTCNTTGNATCCTANNATAATACTAGCAAGATGTT]
[+] EMBL CB096545 [CTTAGTTTTCTTTGCTTGCTTCTCACCACCACTTCATAATGAGGCGCCGNAGTGTAGCCCTGCAAATTGCTTTGGAGTATCGNCGNCGGATGATGACGATGTGTTTATTATGGCAACAACAGNCATGATAGAGCATCACCAACGAGCCCAACGCANTGTAGGAGGTAGAAGAGGTTCTATTTCGGGGCATGNAGNGATTAATCGCGATAGAACGNAAAGACTTGCAAGATTAATGANGGACTATCTTTTGTGATAATCCTACATATGGTCCGGTTTTGTTTCGTCGAAGGCTTAGAATGGCTCAATCTTTGTATATGCNCATTGTGCATGCAGTACAAAATCATGATTATTATTTTGCTCAAAGGAGAAATGCTGCTGGAGNACTTGGACTACATTACATTGCAAAAGATTACTGCTGCTTTACNAATGCTTGCTTTTGGTGCGCCCGCTGATTCTTTGGATGATTATCTTGGTATGGCTGANAGCACCATTTTGNCAAGTCTTAGAAGGCCNNGTGAGAGCTATTGCTGAAATATTTCNCNNATGAATCTNNAAGGTCTCCCNATCAANATGATACCTAATAGATTGCTTGCNATNTGNAANAACAANNAGNCTTTCCANGTNATGCTTTGGCTAACNTAGGATTGCATGCACTGNGAANCTGNCAAAACNGTTCCNACAGCNNGTTCNGGCATGTTCCNAAGGCCCCCGGNTCNTTGNATCCTANNATAATACTAGCAAGATGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3394#0 TACACTTCATTTTCTTTGCTTGCTTCTCCCCACCACTTCATAATGAGGCGCCGTAGTGTA 60
consensus_3394#1 ----CTTAGTTTTCTTTGCTTGCTTCTCACCACCACTTCATAATGAGGCGCCGNAGTGTA 56
*** ******************* ************************ ******
consensus_3394#0 GCCATGCAAATTGCTTTGGAGTCATCGTCGTCGGATGATGACGATGTGTTTATTATGGCA 120
consensus_3394#1 GCCCTGCAAATTGCTTTGGAGT-ATCGNCGNCGGATGATGACGATGTGTTTATTATGGCA 115
*** ****************** **** ** *****************************
consensus_3394#0 ACAACAGTCATGATAGAGCATCACCAACGAGCCCAACGCAATGTAGGAGGTAGAAGAGGT 180
consensus_3394#1 ACAACAGNCATGATAGAGCATCACCAACGAGCCCAACGCANTGTAGGAGGTAGAAGAGGT 175
******* ******************************** *******************
consensus_3394#0 TCTATTTCGGGGCATGTAGTGATTAATCGCGATAGAACGGAAAGACTTGCAAGATTAATG 240
consensus_3394#1 TCTATTTCGGGGCATGNAGNGATTAATCGCGATAGAACGNAAAGACTTGCAAGATTAATG 235
**************** ** ******************* ********************
consensus_3394#0 AGGGACTATNTTTTGTGATAATCCTACATATGGTCCGGTTTTGTTTCGTCGAAGGTTTAG 300
consensus_3394#1 ANGGACTATCTTTTGTGATAATCCTACATATGGTCCGGTTTTGTTTCGTCGAAGGCTTAG 295
* ******* ********************************************* ****
consensus_3394#0 AATGGCTCAATCTTTGTATATGCGCATTGTGCATGCAGTACAAAATCATGATTATTATTT 360
consensus_3394#1 AATGGCTCAATCTTTGTATATGCNCATTGTGCATGCAGTACAAAATCATGATTATTATTT 355
*********************** ************************************
consensus_3394#0 TGTTCAAAGGAGAAATGCTGCTGGAGTACTTGGACTACATC-CATTGCAAAAGATTACTG 419
consensus_3394#1 TGCTCAAAGGAGAAATGCTGCTGGAGNACTTGGACTACATTACATTGCAAAAGATTACTG 415
** *********************** ************* ******************
consensus_3394#0 CTGCTTTACAAATGCTTGCTTTTGGTGTGCCCGCTGATTTTTTGGATGATTATCTTGGTA 479
consensus_3394#1 CTGCTTTACNAATGCTTGCTTTTGGTGCGCCCGCTGATTCTTTGGATGATTATCTTGGTA 475
********* ***************** *********** ********************
consensus_3394#0 TGGCTGAGAGCACCATTTTGTCAAGTCTTAGAAGGT-TTGTGAGAGCTACTGTTGAAATA 538
consensus_3394#1 TGGCTGANAGCACCATTTTGNCAAGTCTTAGAAGGCCNNGTGAGAGCTATTGCTGAAATA 535
******* ************ ************** ********** ** *******
consensus_3394#0 TTTGG-GGATGAATATTTAAGGTCTCCCAATTCAAGGTGATAC-TAATAGATTGCTTGCA 596
consensus_3394#1 TTTCNCNNATGAATCTNNAAGGTCTCCCNAT-CAANATGATACCTAATAGATTGCTTGCN 594
*** ****** * ********** ** *** ****** ***************
consensus_3394#0 ATT--GGAGAACAAAAAGGCTTTCCAGGTA-TGCTTGGG--AACATAG-ATTGCATGCAC 650
consensus_3394#1 ATNTGNAANAACAANNAGNCTTTCCANGTNATGCTTTGGCTAACNTAGGATTGCATGCAC 654
** * ***** ** ******* ** ***** ** *** *** ***********
consensus_3394#0 TGGGAAG-TGGAAAAACTGT-CCAACAGCTTGGTCTGGCATGTACCAAGGGCCAT--GNT 706
consensus_3394#1 TGNGAANCTGNCAAAACNGTTCCNACAGCNNGTTCNGGCATGTTCCNAAGGCCCCCGGNT 714
** *** ** ***** ** ** ***** * ** ******* ** * **** ***
consensus_3394#0 CAT--GAGCCTACTATAANACTANAAAGTTGGTTGCTTCGAAAAGATCTTTTGGATTTGG 764
consensus_3394#1 CNTTGNATCCTANNATAATACTAGCAAGATGTT--------------------------- 747
* * * **** **** **** *** ** *
consensus_3394#0 CATGCTTTTTTTGGATTACCCTGGNTCTCACAA 797
consensus_3394#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||