cluster # 3466

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Oryza sativa
cluster # 3466 cluster # 3466 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3466#0 length = 793 sequences # 1

consensus_3466#1 length = 779 sequences # 1

consensusID : consensus_3466#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 793
fasta sequence

                              [ATCGCGTTCCCTTCCGCCGACGGCGAAACTCTCCGGCGCCCCCTCTCCTTCCGTTCCTCTTCGCCTCCTCCATTAATCGGCGTCAACCCACTTCTCCGCCGTGTGTGCGTACGTGCAGGAGCGACTGCTGTGGAGAGCGCGACTCCGGCCGCTGGCGTTGGATGCGCGCGCAGTGCCTTCCGCGTGCGCCCGATTTGCGTCGGCAGCGCCCACTTCGGAGGCCGCTCTGACGAATTCCGGCGCCGCCTTCACGATCCCCGTCCGCGTGCGGCCGAGACCTGCGGCGGCGCCAACCTCGGAGGCCGATTCGTTCCATTCCTGTGCAAGTCTCGTGCGCACGACGAGTACTGCGAAGAACAACCCTTGCCATCACATCCTCAGTATCTGGGGGCGGACGCTCCAGGCAGTGAAGCTGGGACTGGGAGCAGCCGCCGGCGAATGCTTCTCCAAGAGCACCAAGATTCACAGATCGTAGTGGTTCTGGAAAAAAAAAGTCCTATATGGCGAATGTCTGAAGCTAGTGGTTGATGGAAAACAACAGTCCTATGTGTGAAGCTGGTGAGAATATTCAGAGATGCTCGTGTATAGATTATTATCAGTTAGTACTCTGTTTGTGATCTATTTACTCCCTCCGTCCAAAAAAAAAAACTCAACCAAGGAAAGGAGTGTTTTTTGGGATGGATGGAGTATTATGCAAGGTAAGGGCTTGTTTAGTTGGTGAAATAAAAATTTTTGGATGTCACATCAGACGTTTAACCAGATGTTGGAAGGGGTTTTCGGACACGAATGAAAA]

[+] EMBL AK099413             [ATCGCGTTCCCTTCCGCCGACGGCGAAACTCTCCGGCGCCCCCTCTCCTTCCGTTCCTCTTCGCCTCCTCCATTAATCGGCGTCAACCCACTTCTCCGCCGTGTGTGCGTACGTGCAGGAGCGACTGCTGTGGAGAGCGCGACTCCGGCCGCTGGCGTTGGATGCGCGCGCAGTGCCTTCCGCGTGCGCCCGATTTGCGTCGGCAGCGCCCACTTCGGAGGCCGCTCTGACGAATTCCGGCGCCGCCTTCACGATCCCCGTCCGCGTGCGGCCGAGACCTGCGGCGGCGCCAACCTCGGAGGCCGATTCGTTCCATTCCTGTGCAAGTCTCGTGCGCACGACGAGTACTGCGAAGAACAACCCTTGCCATCACATCCTCAGTATCTGGGGGCGGACGCTCCAGGCAGTGAAGCTGGGACTGGGAGCAGCCGCCGGCGAATGCTTCTCCAAGAGCACCAAGATTCACAGATCGTAGTGGTTCTGGAAAAAAAAAGTCCTATATGGCGAATGTCTGAAGCTAGTGGTTGATGGAAAACAACAGTCCTATGTGTGAAGCTGGTGAGAATATTCAGAGATGCTCGTGTATAGATTATTATCAGTTAGTACTCTGTTTGTGATCTATTTACTCCCTCCGTCCAAAAAAAAAAACTCAACCAAGGAAAGGAGTGTTTTTTGGGATGGATGGAGTATTATGCAAGGTAAGGGCTTGTTTAGTTGGTGAAATAAAAATTTTTGGATGTCACATCAGACGTTTAACCAGATGTTGGAAGGGGTTTTCGGACACGAATGAAAA]




>consensus_3466#0
ATCGCGTTCCCTTCCGCCGACGGCGAAACTCTCCGGCGCCCCCTCTCCTTCCGTTCCTCT
TCGCCTCCTCCATTAATCGGCGTCAACCCACTTCTCCGCCGTGTGTGCGTACGTGCAGGA
GCGACTGCTGTGGAGAGCGCGACTCCGGCCGCTGGCGTTGGATGCGCGCGCAGTGCCTTC
CGCGTGCGCCCGATTTGCGTCGGCAGCGCCCACTTCGGAGGCCGCTCTGACGAATTCCGG
CGCCGCCTTCACGATCCCCGTCCGCGTGCGGCCGAGACCTGCGGCGGCGCCAACCTCGGA
GGCCGATTCGTTCCATTCCTGTGCAAGTCTCGTGCGCACGACGAGTACTGCGAAGAACAA
CCCTTGCCATCACATCCTCAGTATCTGGGGGCGGACGCTCCAGGCAGTGAAGCTGGGACT
GGGAGCAGCCGCCGGCGAATGCTTCTCCAAGAGCACCAAGATTCACAGATCGTAGTGGTT
CTGGAAAAAAAAAGTCCTATATGGCGAATGTCTGAAGCTAGTGGTTGATGGAAAACAACA
GTCCTATGTGTGAAGCTGGTGAGAATATTCAGAGATGCTCGTGTATAGATTATTATCAGT
TAGTACTCTGTTTGTGATCTATTTACTCCCTCCGTCCAAAAAAAAAAACTCAACCAAGGA
AAGGAGTGTTTTTTGGGATGGATGGAGTATTATGCAAGGTAAGGGCTTGTTTAGTTGGTG
AAATAAAAATTTTTGGATGTCACATCAGACGTTTAACCAGATGTTGGAAGGGGTTTTCGG
ACACGAATGAAAA

consensusID : consensus_3466#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 779
fasta sequence

                              [TGCAAGTCTCGTGCGCACGACGAGTACTGCGAAGAACAACCCTTGCCATCACATCCTCAGGTTTGCTGTCCGGTTTTTTATTGATTTGCCTTATATTCGTTTAACATTGTTTACCTGCTAAGATAATTGCAAGGCCAACAGTGAGTTGCTTGGGATTAGCTCTGCATTTTTAGGTGAAGGAAATCTGTGTTTCATTTGAGAACAATTAATCCCAAACTTTGGTTGCAGCATGTAGCGATGGTAGTTTTATAGTATATTAGTTTTGGCAGTCTGATCACAGTGTGTATTGAAAATATTTGGTTAAATTTTTCACCAATTAACGTTCCATTTTTTTTTCACAAATTCTTATTTTCAACCCAAGTTCATGTTCGAATAGCAATGTAGTGTGAGCATAAATCCTTGGTAATGAGCAGACATTTGTTTTCTTCTTATGCACGAACTGATTCAGTTTCTATGCTTAGATAGCTCTGAAAAGACCTATATATGATCAATCCGGATGTACACTGGGATATTATACCTTGATTCTTTTATTAACCTTATTTAAGAAACTATATATGATAAAGATTTAGACAGGGGACACTTTGTGAAGGATGCAATTTCAGTCATCTCAAGTATTGAGCTTCAGTTGTGATGTATCCTCAAGCCATAAATGATGTTACTTTGCTAACAGTATCTGGGGGCGGACGCTCCAGGCAGTGAAGCTGGGACTGGGAGCAGCCGCCGGCGAATGCTTCTCCAAGAGCACCAAGATTCACAGATCGTAGTGGTTCTGGAAAAAA]

[+] EMBL CB000378             [TGCAAGTCTCGTGCGCACGACGAGTACTGCGAAGAACAACCCTTGCCATCACATCCTCAGGTTTGCTGTCCGGTTTTTTATTGATTTGCCTTATATTCGTTTAACATTGTTTACCTGCTAAGATAATTGCAAGGCCAACAGTGAGTTGCTTGGGATTAGCTCTGCATTTTTAGGTGAAGGAAATCTGTGTTTCATTTGAGAACAATTAATCCCAAACTTTGGTTGCAGCATGTAGCGATGGTAGTTTTATAGTATATTAGTTTTGGCAGTCTGATCACAGTGTGTATTGAAAATATTTGGTTAAATTTTTCACCAATTAACGTTCCATTTTTTTTTCACAAATTCTTATTTTCAACCCAAGTTCATGTTCGAATAGCAATGTAGTGTGAGCATAAATCCTTGGTAATGAGCAGACATTTGTTTTCTTCTTATGCACGAACTGATTCAGTTTCTATGCTTAGATAGCTCTGAAAAGACCTATATATGATCAATCCGGATGTACACTGGGATATTATACCTTGATTCTTTTATTAACCTTATTTAAGAAACTATATATGATAAAGATTTAGACAGGGGACACTTTGTGAAGGATGCAATTTCAGTCATCTCAAGTATTGAGCTTCAGTTGTGATGTATCCTCAAGCCATAAATGATGTTACTTTGCTAACAGTATCTGGGGGCGGACGCTCCAGGCAGTGAAGCTGGGACTGGGAGCAGCCGCCGGCGAATGCTTCTCCAAGAGCACCAAGATTCACAGATCGTAGTGGTTCTGGAAAAAA]




>consensus_3466#1
TGCAAGTCTCGTGCGCACGACGAGTACTGCGAAGAACAACCCTTGCCATCACATCCTCAG
GTTTGCTGTCCGGTTTTTTATTGATTTGCCTTATATTCGTTTAACATTGTTTACCTGCTA
AGATAATTGCAAGGCCAACAGTGAGTTGCTTGGGATTAGCTCTGCATTTTTAGGTGAAGG
AAATCTGTGTTTCATTTGAGAACAATTAATCCCAAACTTTGGTTGCAGCATGTAGCGATG
GTAGTTTTATAGTATATTAGTTTTGGCAGTCTGATCACAGTGTGTATTGAAAATATTTGG
TTAAATTTTTCACCAATTAACGTTCCATTTTTTTTTCACAAATTCTTATTTTCAACCCAA
GTTCATGTTCGAATAGCAATGTAGTGTGAGCATAAATCCTTGGTAATGAGCAGACATTTG
TTTTCTTCTTATGCACGAACTGATTCAGTTTCTATGCTTAGATAGCTCTGAAAAGACCTA
TATATGATCAATCCGGATGTACACTGGGATATTATACCTTGATTCTTTTATTAACCTTAT
TTAAGAAACTATATATGATAAAGATTTAGACAGGGGACACTTTGTGAAGGATGCAATTTC
AGTCATCTCAAGTATTGAGCTTCAGTTGTGATGTATCCTCAAGCCATAAATGATGTTACT
TTGCTAACAGTATCTGGGGGCGGACGCTCCAGGCAGTGAAGCTGGGACTGGGAGCAGCCG
CCGGCGAATGCTTCTCCAAGAGCACCAAGATTCACAGATCGTAGTGGTTCTGGAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3466#0      -----ATCGCGTTCCCTTC-CGCCGACGGCGAAACTCT-CCGGCGCCCCCTCTCCTTCCG 53
consensus_3466#1      TGCAAGTCTCGTGCGCACGACGAGTACTGCGAAGAACAACCCTTGCCATCACATCCTCAG 60
                            ** *** * *    **   ** *****   *  **   ***  * *  * ** *

consensus_3466#0      TTCCTCT-TCGCCTCCTCCATTAATCGGCGTCAACCCACTTCTCCGCCGTGTGTGCGTAC 112
consensus_3466#1      GTTTGCTGTCCGGTTTTTTATTGATTTGCCTTATATTCGTTTAACATTGTTTACCTGCTA 120
                       *   ** **   *  *  *** **  ** * *      **   *   ** *    *   

consensus_3466#0      GTGCAGGAGCGA---CTGCTGTGGAGAGCGCGACTCCGGCCGC-TGGCGTTGGATGCGCG 168
consensus_3466#1      AGATAATTGCAAGGCCAACAGTGAGTTGCTTGGGATTAGCTCTGCATTTTTAGGTGAAGG 180
                          *   ** *   *  * ***    **  *      **         ** * **   *

consensus_3466#0      CGCAGTGCCTTCCGCGTGCGCCCGATTTG-------CGTCGGCAGC-GCCCACTTCGGAG 220
consensus_3466#1      AAATCTGTGTTTCATTTGAGAACAATTAATCCCAAACTTTGGTTGCAGCATGTAGCGATG 240
                           **  ** *   ** *  * ***         * * **  ** **      **  *

consensus_3466#0      GCCGCTCTGACGAATTCCGGCGCCGCCTTCACGATCCCCGTCCGCGTGCGGCCGAGACCT 280
consensus_3466#1      GTAGTTTTATAGTATATTAGTTTTGGCAGTCTGATCACAGT--GTGTATTGAAAATATTT 298
                      *  * * *   * **    *    * *     **** * **  * **   *   * *  *

consensus_3466#0      GCGGCGGCGCCAACCTCGGAGGCCGATTCGTTCCATTCCTGTGCAAGTCTCGTGCGCACG 340
consensus_3466#1      G-GTTAAATTTTTCACCAATTAACGTTCCATTTTTTTTTCACA-AATTCTTATTTTCAAC 356
                      * *          *  *      ** * * **   **       ** ***  *   **  

consensus_3466#0      ACGAGTAC---TGCGAAGAACAACCCT-TGCCATCACA--TCCTCAGTATCTGG-GGGCG 393
consensus_3466#1      CCAAGTTCATGTTCGAATAGCAATGTAGTGTGAGCATAAATCCTTGGTAATGAGCAGACA 416
                       * *** *   * **** * ***     **  * ** *  ****  ***    *  * * 

consensus_3466#0      GACGCTCCAGGCAGTGAAGCTGGGACTGGGAGCAGCCGCCG-GCGAATGCTTCTCCAAGA 452
consensus_3466#1      TTTGTTTTCTTC--TTATGCACGAACTGATT-CAGTTTCTATGCTTAGATAGCTCTGAAA 473
                         * *     *  * * **  * ****    ***   *   **  *     ***  * *

consensus_3466#0      GCACCAAGATTCACAGATCGTAGTGGTTCTGGAAAAAAAAAGTCCTATATGGCGAATGTC 512
consensus_3466#1      AGACCTATATAT---GATCAATCCGGATGT---ACACTGGGATATTATACCTTGATTCTT 527
                        *** * **     ****     ** * *   * *      *  ****    ** * * 

consensus_3466#0      TGAAGCTAGTGGTTGATGGAAAACAACA-GTCCTATGTGTGAAGCTGGTGAGAATATTCA 571
consensus_3466#1      TTA--TTAACCTTATTTAAGAAACTATATATGATAAAGATTTAGACAGGGGACACTTTGT 585
                      * *   **    *   *   **** * *  *  **    *  **   * *   *  **  

consensus_3466#0      GAGATGCTCGTGTATAGATTATTATCAGT-TAGTACTCTGTTTGTGATCTATTTACTCCC 630
consensus_3466#1      GAAGGATGCA-ATTTCAGTCATCTCAAGTATTGAGCTTCAGTTGTGATGTATC--CTCAA 642
                      **      *   * *   * **    *** * *  **    ******* ***   ***  

consensus_3466#0      TCCGTCCAAAAAAAAAAACTCAACCAAGGAAAGGAGTGTTTTTTGGGATGGATGGAGTAT 690
consensus_3466#1      GCCAT--AAATGATGTTACTTTGCTAACA--------GTATCTGGGGGCGGACGCTCCAG 692
                       ** *  ***  *    ***   * **          ** * * ***  *** *    * 

consensus_3466#0      TATGCAAGGTAAGGGCTTGTT-TAGTTGGTGAAATAAAAATTTTTGGATGTCACATCAGA 749
consensus_3466#1      GCAGTGAAGCTGGGACTGGGAGCAGCCGCCGG--CGAATGCTTCTCCAAGA-GCACCAAG 749
                         *  * *   ** ** *    **  *  *     **   ** *  * *   ** **  

consensus_3466#0      CGTTTAACCAGATGTTGGAAGGGGTTTTCGGACACGAATGAAAA 793
consensus_3466#1      -ATTCA--CAGA---TCGTAGTGGTTCTGGAAAAAA-------- 779
                        ** *  ****   * * ** **** * * * *