cluster # 348

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Oryza sativa
cluster # 348 cluster # 348 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_348#0 length = 1377 sequences # 1

consensus_348#1 length = 239 sequences # 1

consensusID : consensus_348#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1377
fasta sequence

                              [TAAGCCCACACAGCCCCAGACTCGCCGGAAGCCATGGAGGAAGAGAAGGCGGCGGCGTACTACGACGAGCTCAGCCGCAAGGGCGAGGGCGCCCGCCGCTTCAAGCAGGGCCTCGGCTTCTCCTCCTCCGATCCCCAATCCACCTCCTTCCCCTCCAAACCCCCCTCCACCTCCTCCTCCTTCCTCTCCGGCTTCGTCCGCGCCGGCGCCACCCCCGCCCCCGCGCAACCCACCAAGCAGCCGCCGCCGCCGCCGCCGCCGCCACACGAGCCGTCCCGCACAGGCCGTCACTCTCGGTCCCCGTCCCCGTCGCGGCGGCATCGGACCCGCTCCAGTTCCCCGTCTCGCTCGCGGCGCCACCGGTCCAGGTCGAGGGAGCGGAGGCGCCGGTCCAGGTCCAGGGAGAGGGAGAGGGAGGACCGCAGGGCGTCGCGCCGCCGCTCCCGGTCTCGTTCTCGGTCGCGGTCGCCTTCTCGCCGAAGCGGGAGGAGCTCGTACTCCGAGAACCGGCATGGGGACAGGCGGCGCGACGATGGTGGCGGCCGCCGTGGAAGCTCGAAGGGGCGCGGTGGCAGGGAGGGTGGTAAGGTGGATTACTCGCGGCTCATAGAAGGTTATGATAGAATGACCCCAGCGGAGAGAGTGAAGGCAAAGATGAAGCTTCAGCTTTCAGAGACAGCTTCAAAAGATTCCACCCTTGGAAATGCCACTGTGGGGTGGGAAAGATTTGAATTCAATAAGGATGCTCCACTTGATGAAGATGACAATGATGTTGAAGTTGCTAATGATGACGCTTCACTGGTGAAGCACATAGGAAAGAGCTTCCGACTTTCTGCTGTACAATCCAAGCATGAAGATACGGTCAGAGATGCACATGAAAATGCTATATTTGGAGTACCTGCATACCCCATTGTTGATACTGAAACTACGGAGGCTGAGCCTGAAACCAATGACGAAAGCGAGAAAGCTAAAGATGTTGAAGCCGAACCTAGCAGTTCCCTCATTAGTGATAAAGTTCTGGCAACGCAAAGCGGGTCATGGAGAGAAAGAGCTCAGAAATTACGGCAGAATCCAAATGCGTGAAGTTCTATCCATGTTCCATTTATGCTGCTCTGCTGAATTTTGACTCCGGAATTCGTATAATGATGACTCCATGATGTGCAGAGCGTTAAGCAGTTGACAGTGATACTTCGAAGCTGAACTCTGTTGTATATGTATCTTTGGTGTGAGTACTGAGTAGTGCCGTACTATTGCATTGCTTCTCTAGTTCTATGACGCCAAAAGCTTAGGTCTGGTTTTTGGGTAGCACCAGCTGCACTAAATTAATGTAAAATTTGTCTGTGTTTTAATTTCTTCACATCAACGCATAGATGTATC]

[+] EMBL AK106335             [TAAGCCCACACAGCCCCAGACTCGCCGGAAGCCATGGAGGAAGAGAAGGCGGCGGCGTACTACGACGAGCTCAGCCGCAAGGGCGAGGGCGCCCGCCGCTTCAAGCAGGGCCTCGGCTTCTCCTCCTCCGATCCCCAATCCACCTCCTTCCCCTCCAAACCCCCCTCCACCTCCTCCTCCTTCCTCTCCGGCTTCGTCCGCGCCGGCGCCACCCCCGCCCCCGCGCAACCCACCAAGCAGCCGCCGCCGCCGCCGCCGCCGCCACACGAGCCGTCCCGCACAGGCCGTCACTCTCGGTCCCCGTCCCCGTCGCGGCGGCATCGGACCCGCTCCAGTTCCCCGTCTCGCTCGCGGCGCCACCGGTCCAGGTCGAGGGAGCGGAGGCGCCGGTCCAGGTCCAGGGAGAGGGAGAGGGAGGACCGCAGGGCGTCGCGCCGCCGCTCCCGGTCTCGTTCTCGGTCGCGGTCGCCTTCTCGCCGAAGCGGGAGGAGCTCGTACTCCGAGAACCGGCATGGGGACAGGCGGCGCGACGATGGTGGCGGCCGCCGTGGAAGCTCGAAGGGGCGCGGTGGCAGGGAGGGTGGTAAGGTGGATTACTCGCGGCTCATAGAAGGTTATGATAGAATGACCCCAGCGGAGAGAGTGAAGGCAAAGATGAAGCTTCAGCTTTCAGAGACAGCTTCAAAAGATTCCACCCTTGGAAATGCCACTGTGGGGTGGGAAAGATTTGAATTCAATAAGGATGCTCCACTTGATGAAGATGACAATGATGTTGAAGTTGCTAATGATGACGCTTCACTGGTGAAGCACATAGGAAAGAGCTTCCGACTTTCTGCTGTACAATCCAAGCATGAAGATACGGTCAGAGATGCACATGAAAATGCTATATTTGGAGTACCTGCATACCCCATTGTTGATACTGAAACTACGGAGGCTGAGCCTGAAACCAATGACGAAAGCGAGAAAGCTAAAGATGTTGAAGCCGAACCTAGCAGTTCCCTCATTAGTGATAAAGTTCTGGCAACGCAAAGCGGGTCATGGAGAGAAAGAGCTCAGAAATTACGGCAGAATCCAAATGCGTGAAGTTCTATCCATGTTCCATTTATGCTGCTCTGCTGAATTTTGACTCCGGAATTCGTATAATGATGACTCCATGATGTGCAGAGCGTTAAGCAGTTGACAGTGATACTTCGAAGCTGAACTCTGTTGTATATGTATCTTTGGTGTGAGTACTGAGTAGTGCCGTACTATTGCATTGCTTCTCTAGTTCTATGACGCCAAAAGCTTAGGTCTGGTTTTTGGGTAGCACCAGCTGCACTAAATTAATGTAAAATTTGTCTGTGTTTTAATTTCTTCACATCAACGCATAGATGTATC]




>consensus_348#0
TAAGCCCACACAGCCCCAGACTCGCCGGAAGCCATGGAGGAAGAGAAGGCGGCGGCGTAC
TACGACGAGCTCAGCCGCAAGGGCGAGGGCGCCCGCCGCTTCAAGCAGGGCCTCGGCTTC
TCCTCCTCCGATCCCCAATCCACCTCCTTCCCCTCCAAACCCCCCTCCACCTCCTCCTCC
TTCCTCTCCGGCTTCGTCCGCGCCGGCGCCACCCCCGCCCCCGCGCAACCCACCAAGCAG
CCGCCGCCGCCGCCGCCGCCGCCACACGAGCCGTCCCGCACAGGCCGTCACTCTCGGTCC
CCGTCCCCGTCGCGGCGGCATCGGACCCGCTCCAGTTCCCCGTCTCGCTCGCGGCGCCAC
CGGTCCAGGTCGAGGGAGCGGAGGCGCCGGTCCAGGTCCAGGGAGAGGGAGAGGGAGGAC
CGCAGGGCGTCGCGCCGCCGCTCCCGGTCTCGTTCTCGGTCGCGGTCGCCTTCTCGCCGA
AGCGGGAGGAGCTCGTACTCCGAGAACCGGCATGGGGACAGGCGGCGCGACGATGGTGGC
GGCCGCCGTGGAAGCTCGAAGGGGCGCGGTGGCAGGGAGGGTGGTAAGGTGGATTACTCG
CGGCTCATAGAAGGTTATGATAGAATGACCCCAGCGGAGAGAGTGAAGGCAAAGATGAAG
CTTCAGCTTTCAGAGACAGCTTCAAAAGATTCCACCCTTGGAAATGCCACTGTGGGGTGG
GAAAGATTTGAATTCAATAAGGATGCTCCACTTGATGAAGATGACAATGATGTTGAAGTT
GCTAATGATGACGCTTCACTGGTGAAGCACATAGGAAAGAGCTTCCGACTTTCTGCTGTA
CAATCCAAGCATGAAGATACGGTCAGAGATGCACATGAAAATGCTATATTTGGAGTACCT
GCATACCCCATTGTTGATACTGAAACTACGGAGGCTGAGCCTGAAACCAATGACGAAAGC
GAGAAAGCTAAAGATGTTGAAGCCGAACCTAGCAGTTCCCTCATTAGTGATAAAGTTCTG
GCAACGCAAAGCGGGTCATGGAGAGAAAGAGCTCAGAAATTACGGCAGAATCCAAATGCG
TGAAGTTCTATCCATGTTCCATTTATGCTGCTCTGCTGAATTTTGACTCCGGAATTCGTA
TAATGATGACTCCATGATGTGCAGAGCGTTAAGCAGTTGACAGTGATACTTCGAAGCTGA
ACTCTGTTGTATATGTATCTTTGGTGTGAGTACTGAGTAGTGCCGTACTATTGCATTGCT
TCTCTAGTTCTATGACGCCAAAAGCTTAGGTCTGGTTTTTGGGTAGCACCAGCTGCACTA
AATTAATGTAAAATTTGTCTGTGTTTTAATTTCTTCACATCAACGCATAGATGTATC

consensusID : consensus_348#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 239
fasta sequence

                              [GCCGCTAGCGGCCGCGAATTCGCGGCCGCTCTCGCCGGAAGCCATGGAGGAAGAGAAGGCGGCGGCGTACTACGACGAGCTCAGCCGCAAGGGCGAGGGCGCCCGCCGCTTCAAGCAGGGCCTCGGCTTCTCCTCCTCCGATCCCCAATCCACCTCCTTCCCCTCCAAACCCCCCTCCACCTCCTCCTCCTTCCTCTCCGGCTTCGTCCGCGCCGGCGCCACCCCCGCCCCCGCGCAAC]

[+] EMBL AU225258             [GCCGCTAGCGGCCGCGAATTCGCGGCCGCTCTCGCCGGAAGCCATGGAGGAAGAGAAGGCGGCGGCGTACTACGACGAGCTCAGCCGCAAGGGCGAGGGCGCCCGCCGCTTCAAGCAGGGCCTCGGCTTCTCCTCCTCCGATCCCCAATCCACCTCCTTCCCCTCCAAACCCCCCTCCACCTCCTCCTCCTTCCTCTCCGGCTTCGTCCGCGCCGGCGCCACCCCCGCCCCCGCGCAAC]




>consensus_348#1
GCCGCTAGCGGCCGCGAATTCGCGGCCGCTCTCGCCGGAAGCCATGGAGGAAGAGAAGGC
GGCGGCGTACTACGACGAGCTCAGCCGCAAGGGCGAGGGCGCCCGCCGCTTCAAGCAGGG
CCTCGGCTTCTCCTCCTCCGATCCCCAATCCACCTCCTTCCCCTCCAAACCCCCCTCCAC
CTCCTCCTCCTTCCTCTCCGGCTTCGTCCGCGCCGGCGCCACCCCCGCCCCCGCGCAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_348#0      -----TAA-GCCCACACAGCCCCAGAC----TCGCCGGAAGCCATGGAGGAAGAGAAGGC 50
consensus_348#1      GCCGCTAGCGGCCGCGAATTCGCGGCCGCTCTCGCCGGAAGCCATGGAGGAAGAGAAGGC 60
                          **  * ** *  *  * * * *    *****************************

consensus_348#0      GGCGGCGTACTACGACGAGCTCAGCCGCAAGGGCGAGGGCGCCCGCCGCTTCAAGCAGGG 110
consensus_348#1      GGCGGCGTACTACGACGAGCTCAGCCGCAAGGGCGAGGGCGCCCGCCGCTTCAAGCAGGG 120
                     ************************************************************

consensus_348#0      CCTCGGCTTCTCCTCCTCCGATCCCCAATCCACCTCCTTCCCCTCCAAACCCCCCTCCAC 170
consensus_348#1      CCTCGGCTTCTCCTCCTCCGATCCCCAATCCACCTCCTTCCCCTCCAAACCCCCCTCCAC 180
                     ************************************************************

consensus_348#0      CTCCTCCTCCTTCCTCTCCGGCTTCGTCCGCGCCGGCGCCACCCCCGCCCCCGCGCAACC 230
consensus_348#1      CTCCTCCTCCTTCCTCTCCGGCTTCGTCCGCGCCGGCGCCACCCCCGCCCCCGCGCAAC- 239
                     *********************************************************** 

consensus_348#0      CACCAAGCAGCCGCCGCCGCCGCCGCCGCCGCCACACGAGCCGTCCCGCACAGGCCGTCA 290
consensus_348#1      ------------------------------------------------------------
                                                                                 

consensus_348#0      CTCTCGGTCCCCGTCCCCGTCGCGGCGGCATCGGACCCGCTCCAGTTCCCCGTCTCGCTC 350
consensus_348#1      ------------------------------------------------------------
                                                                                 

consensus_348#0      GCGGCGCCACCGGTCCAGGTCGAGGGAGCGGAGGCGCCGGTCCAGGTCCAGGGAGAGGGA 410
consensus_348#1      ------------------------------------------------------------
                                                                                 

consensus_348#0      GAGGGAGGACCGCAGGGCGTCGCGCCGCCGCTCCCGGTCTCGTTCTCGGTCGCGGTCGCC 470
consensus_348#1      ------------------------------------------------------------
                                                                                 

consensus_348#0      TTCTCGCCGAAGCGGGAGGAGCTCGTACTCCGAGAACCGGCATGGGGACAGGCGGCGCGA 530
consensus_348#1      ------------------------------------------------------------
                                                                                 

consensus_348#0      CGATGGTGGCGGCCGCCGTGGAAGCTCGAAGGGGCGCGGTGGCAGGGAGGGTGGTAAGGT 590
consensus_348#1      ------------------------------------------------------------
                                                                                 

consensus_348#0      GGATTACTCGCGGCTCATAGAAGGTTATGATAGAATGACCCCAGCGGAGAGAGTGAAGGC 650
consensus_348#1      ------------------------------------------------------------
                                                                                 

consensus_348#0      AAAGATGAAGCTTCAGCTTTCAGAGACAGCTTCAAAAGATTCCACCCTTGGAAATGCCAC 710
consensus_348#1      ------------------------------------------------------------
                                                                                 

consensus_348#0      TGTGGGGTGGGAAAGATTTGAATTCAATAAGGATGCTCCACTTGATGAAGATGACAATGA 770
consensus_348#1      ------------------------------------------------------------
                                                                                 

consensus_348#0      TGTTGAAGTTGCTAATGATGACGCTTCACTGGTGAAGCACATAGGAAAGAGCTTCCGACT 830
consensus_348#1      ------------------------------------------------------------
                                                                                 

consensus_348#0      TTCTGCTGTACAATCCAAGCATGAAGATACGGTCAGAGATGCACATGAAAATGCTATATT 890
consensus_348#1      ------------------------------------------------------------
                                                                                 

consensus_348#0      TGGAGTACCTGCATACCCCATTGTTGATACTGAAACTACGGAGGCTGAGCCTGAAACCAA 950
consensus_348#1      ------------------------------------------------------------
                                                                                 

consensus_348#0      TGACGAAAGCGAGAAAGCTAAAGATGTTGAAGCCGAACCTAGCAGTTCCCTCATTAGTGA 1010
consensus_348#1      ------------------------------------------------------------
                                                                                 

consensus_348#0      TAAAGTTCTGGCAACGCAAAGCGGGTCATGGAGAGAAAGAGCTCAGAAATTACGGCAGAA 1070
consensus_348#1      ------------------------------------------------------------
                                                                                 

consensus_348#0      TCCAAATGCGTGAAGTTCTATCCATGTTCCATTTATGCTGCTCTGCTGAATTTTGACTCC 1130
consensus_348#1      ------------------------------------------------------------
                                                                                 

consensus_348#0      GGAATTCGTATAATGATGACTCCATGATGTGCAGAGCGTTAAGCAGTTGACAGTGATACT 1190
consensus_348#1      ------------------------------------------------------------
                                                                                 

consensus_348#0      TCGAAGCTGAACTCTGTTGTATATGTATCTTTGGTGTGAGTACTGAGTAGTGCCGTACTA 1250
consensus_348#1      ------------------------------------------------------------
                                                                                 

consensus_348#0      TTGCATTGCTTCTCTAGTTCTATGACGCCAAAAGCTTAGGTCTGGTTTTTGGGTAGCACC 1310
consensus_348#1      ------------------------------------------------------------
                                                                                 

consensus_348#0      AGCTGCACTAAATTAATGTAAAATTTGTCTGTGTTTTAATTTCTTCACATCAACGCATAG 1370
consensus_348#1      ------------------------------------------------------------
                                                                                 

consensus_348#0      ATGTATC 1377
consensus_348#1      -------