cluster # 3482

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Oryza sativa
cluster # 3482 cluster # 3482 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3482#0 length = 689 sequences # 1

consensus_3482#1 length = 462 sequences # 1

consensusID : consensus_3482#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 689
fasta sequence

                              [TTTTTTTTTTTTTCTTGGGGAGATATACACAATCCATTAATTTACAACATTCTTCACTTATATTCATTTACAATTTACATCGAGAAATGTAAGAAGGACCAATGATCCTTCCTTATTATTCATGGAGGCGATATCTTGACACAAAAGAGACTTACATTACTTACAAATTCACTTATCACACACACTCGAAACCATAATTCACAGTCATCTTGAGGAGCATTTCATTGAAAAGTTCATTGAGATGGCGATCCATGATACCTGAGATGGCTTCCATGAATGCCTTTTCACCTATCCCAGGAAGAACAACATCCTCTGCCTCTTCAACAATCTCTTCAATCTTTGATTTGGTTGTAATGTTCTCCCTACACAACATGTTACCGATCTCATATGGAGTTAGACCTCTCACAGCACCCTTCTTCAACATCATGGTGCTTAGACGAAAAACACGAACACACTTAGATGATGGTTCACAACCATTGAGTTTGAGCAACTTGATATCCTCTTCCTCGTCAAGTGACTTTATGTAGTCCAGGGTTTCAACATTGAAAGGCTGGCATGCTTGGGGCCAGTAAAGCCAATCAAGCGTGCAGTCTTCAAAGCTTTCAGGCAGACNATACCCATGATCAATTGGTATCAACTCAATCTGCCCATTCTCATCCTTACGAATCAGTATGTTGCCGCCATGGCGA]

[+] EMBL CA763201             [TTTTTTTTTTTTTCTTGGGGAGATATACACAATCCATTAATTTACAACATTCTTCACTTATATTCATTTACAATTTACATCGAGAAATGTAAGAAGGACCAATGATCCTTCCTTATTATTCATGGAGGCGATATCTTGACACAAAAGAGACTTACATTACTTACAAATTCACTTATCACACACACTCGAAACCATAATTCACAGTCATCTTGAGGAGCATTTCATTGAAAAGTTCATTGAGATGGCGATCCATGATACCTGAGATGGCTTCCATGAATGCCTTTTCACCTATCCCAGGAAGAACAACATCCTCTGCCTCTTCAACAATCTCTTCAATCTTTGATTTGGTTGTAATGTTCTCCCTACACAACATGTTACCGATCTCATATGGAGTTAGACCTCTCACAGCACCCTTCTTCAACATCATGGTGCTTAGACGAAAAACACGAACACACTTAGATGATGGTTCACAACCATTGAGTTTGAGCAACTTGATATCCTCTTCCTCGTCAAGTGACTTTATGTAGTCCAGGGTTTCAACATTGAAAGGCTGGCATGCTTGGGGCCAGTAAAGCCAATCAAGCGTGCAGTCTTCAAAGCTTTCAGGCAGACNATACCCATGATCAATTGGTATCAACTCAATCTGCCCATTCTCATCCTTACGAATCAGTATGTTGCCGCCATGGCGA]




>consensus_3482#0
TTTTTTTTTTTTTCTTGGGGAGATATACACAATCCATTAATTTACAACATTCTTCACTTA
TATTCATTTACAATTTACATCGAGAAATGTAAGAAGGACCAATGATCCTTCCTTATTATT
CATGGAGGCGATATCTTGACACAAAAGAGACTTACATTACTTACAAATTCACTTATCACA
CACACTCGAAACCATAATTCACAGTCATCTTGAGGAGCATTTCATTGAAAAGTTCATTGA
GATGGCGATCCATGATACCTGAGATGGCTTCCATGAATGCCTTTTCACCTATCCCAGGAA
GAACAACATCCTCTGCCTCTTCAACAATCTCTTCAATCTTTGATTTGGTTGTAATGTTCT
CCCTACACAACATGTTACCGATCTCATATGGAGTTAGACCTCTCACAGCACCCTTCTTCA
ACATCATGGTGCTTAGACGAAAAACACGAACACACTTAGATGATGGTTCACAACCATTGA
GTTTGAGCAACTTGATATCCTCTTCCTCGTCAAGTGACTTTATGTAGTCCAGGGTTTCAA
CATTGAAAGGCTGGCATGCTTGGGGCCAGTAAAGCCAATCAAGCGTGCAGTCTTCAAAGC
TTTCAGGCAGACNATACCCATGATCAATTGGTATCAACTCAATCTGCCCATTCTCATCCT
TACGAATCAGTATGTTGCCGCCATGGCGA

consensusID : consensus_3482#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 462
fasta sequence

                              [TTTTTTTTTTGAACATGCAAGATGTGGTGAGATATACACAATCCATTAATTTACAACATTCTTCACTTATATTCATTTACAATTTACATCGAGAAATGTAAGAAGGACCAATGATCCTTCCTTATTATTCATGGAGGCAATATCTGACACAAAAGAGACTTACATTACTTACAAATTCACTTATCACACACACTCGAAACCATAATTCACAGTCATCTGAGGAGCATTTCATTTGAAGAGTTCATTGAGATGGCGATCCATGATACCTGAGATGGCTTCCATGAATGCCTTTTCACCTATCCCAGGAAGAACAACATCATCTGCTCTTCAACAATCTCTTCAATCTTGATTGGGTGTAATGTTCTCCCTACACAACATGTTACCGATCTCATATGGAGTTAGACCTCTCACAGGACCCTTCTTCAACATCATGGGCTTAGACGAAAAACCACGAACACACTT]

[-] EMBL BI800580             [TTTTTTTTTTGAACATGCAAGATGTGGTGAGATATACACAATCCATTAATTTACAACATTCTTCACTTATATTCATTTACAATTTACATCGAGAAATGTAAGAAGGACCAATGATCCTTCCTTATTATTCATGGAGGCAATATCTGACACAAAAGAGACTTACATTACTTACAAATTCACTTATCACACACACTCGAAACCATAATTCACAGTCATCTGAGGAGCATTTCATTTGAAGAGTTCATTGAGATGGCGATCCATGATACCTGAGATGGCTTCCATGAATGCCTTTTCACCTATCCCAGGAAGAACAACATCATCTGCTCTTCAACAATCTCTTCAATCTTGATTGGGTGTAATGTTCTCCCTACACAACATGTTACCGATCTCATATGGAGTTAGACCTCTCACAGGACCCTTCTTCAACATCATGGGCTTAGACGAAAAACCACGAACACACTT]




>consensus_3482#1
TTTTTTTTTTGAACATGCAAGATGTGGTGAGATATACACAATCCATTAATTTACAACATT
CTTCACTTATATTCATTTACAATTTACATCGAGAAATGTAAGAAGGACCAATGATCCTTC
CTTATTATTCATGGAGGCAATATCTGACACAAAAGAGACTTACATTACTTACAAATTCAC
TTATCACACACACTCGAAACCATAATTCACAGTCATCTGAGGAGCATTTCATTTGAAGAG
TTCATTGAGATGGCGATCCATGATACCTGAGATGGCTTCCATGAATGCCTTTTCACCTAT
CCCAGGAAGAACAACATCATCTGCTCTTCAACAATCTCTTCAATCTTGATTGGGTGTAAT
GTTCTCCCTACACAACATGTTACCGATCTCATATGGAGTTAGACCTCTCACAGGACCCTT
CTTCAACATCATGGGCTTAGACGAAAAACCACGAACACACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3482#0      TTTTTTTTTTTTTCTTG---------GGGAGATATACACAATCCATTAATTTACAACATT 51
consensus_3482#1      TTTTTTTTTTGAACATGCAAGATGTGGTGAGATATACACAATCCATTAATTTACAACATT 60
                      **********   * **         * ********************************

consensus_3482#0      CTTCACTTATATTCATTTACAATTTACATCGAGAAATGTAAGAAGGACCAATGATCCTTC 111
consensus_3482#1      CTTCACTTATATTCATTTACAATTTACATCGAGAAATGTAAGAAGGACCAATGATCCTTC 120
                      ************************************************************

consensus_3482#0      CTTATTATTCATGGAGGCGATATCTTGACACAAAAGAGACTTACATTACTTACAAATTCA 171
consensus_3482#1      CTTATTATTCATGGAGGCAATATCT-GACACAAAAGAGACTTACATTACTTACAAATTCA 179
                      ****************** ****** **********************************

consensus_3482#0      CTTATCACACACACTCGAAACCATAATTCACAGTCATCTTGAGGAGCATTTCATT-GAAA 230
consensus_3482#1      CTTATCACACACACTCGAAACCATAATTCACAGTCATCT-GAGGAGCATTTCATTTGAAG 238
                      *************************************** *************** *** 

consensus_3482#0      AGTTCATTGAGATGGCGATCCATGATACCTGAGATGGCTTCCATGAATGCCTTTTCACCT 290
consensus_3482#1      AGTTCATTGAGATGGCGATCCATGATACCTGAGATGGCTTCCATGAATGCCTTTTCACCT 298
                      ************************************************************

consensus_3482#0      ATCCCAGGAAGAACAACATCCTCTGCCTCTTCAACAATCTCTTCAATCTTTGATTTGGTT 350
consensus_3482#1      ATCCCAGGAAGAACAACATCATCTGC-TCTTCAACAATCTCTTCAATCTTGA--TTGGGT 355
                      ******************** ***** ***********************    **** *

consensus_3482#0      GTAATGTTCTCCCTACACAACATGTTACCGATCTCATATGGAGTTAGACCTCTCACAGCA 410
consensus_3482#1      GTAATGTTCTCCCTACACAACATGTTACCGATCTCATATGGAGTTAGACCTCTCACAGGA 415
                      ********************************************************** *

consensus_3482#0      CCCTTCTTCAACATCATGGTGCTTAGACGAAAAAC-ACGAACACACTTAGATGATGGTTC 469
consensus_3482#1      CCCTTCTTCAACATCATGG-GCTTAGACGAAAAACCACGAACACACTT------------ 462
                      ******************* *************** ************            

consensus_3482#0      ACAACCATTGAGTTTGAGCAACTTGATATCCTCTTCCTCGTCAAGTGACTTTATGTAGTC 529
consensus_3482#1      ------------------------------------------------------------
                                                                                  

consensus_3482#0      CAGGGTTTCAACATTGAAAGGCTGGCATGCTTGGGGCCAGTAAAGCCAATCAAGCGTGCA 589
consensus_3482#1      ------------------------------------------------------------
                                                                                  

consensus_3482#0      GTCTTCAAAGCTTTCAGGCAGACNATACCCATGATCAATTGGTATCAACTCAATCTGCCC 649
consensus_3482#1      ------------------------------------------------------------
                                                                                  

consensus_3482#0      ATTCTCATCCTTACGAATCAGTATGTTGCCGCCATGGCGA 689
consensus_3482#1      ----------------------------------------