cluster # 3501

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Oryza sativa
cluster # 3501 cluster # 3501 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3501#0 length = 1119 sequences # 1

consensus_3501#1 length = 585 sequences # 1

consensusID : consensus_3501#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1119
fasta sequence

                              [TTCTCACGCCGCACACACTGCGGCCCCTGCATCGCTAGCGTGAGCGAGAACGAGAACGAGAGACGCACGTAGTGGTACCTTTTGCGAACGGTAGCGAGAGCGAGAGATCGCGTGGTTTTTTTTGATCGCTAGCTGTGTTAGCCATGGCGCCGGGTGCTGGGTCGTCGTCGTCGGCGAGGAGGGGCAGGCGCGTCGCCGCCGCCGAGCCGCCCCGCCGCGCGCTCAGGATGCGCGCGTCGTCGCCGATGTACTACACGTCCGACGACGAGGACTTGCCGGAGATTGTCCTGACGCCCCCGGCTCCGGCGCCGCCGCGCACCGGTACCCGCTCGCTGCGGATGCACGCGTCGCCGCCCGACTATGGGCGCCGCCGTACCAACCGACCCCGCCGCGTGGCACGGACGAGGTCGCCGCCGGTGGTGCAGGAGGCGGAGAGGGAGCCGCCGGCGCCGCAGCAGCCGGCGGCGGTGGTGGTGGAGCGCGTGTTTTACATGGTGGGCAGCCCGCCGGACGTCATCACGGCCACGGGGGAAGGGCCGGGGGGGCGCACGGTGGCGGGCTTCCGTTGCAGGAGGCTCACGTCCACGCGCACCCTCGTCGACGGCGAGGACGCCGCCGCCCGCGCCGCCGCCATCAGCGGCGCCCGCGCCCTGGTCATGTGCAGCTGCCACGGCGCGCCCTTCACCCACGCCGAGTTCCTGCTCCACGCCGGCGGCACCGACCTGGGCCGCAACGTCACCGGCTACCCGTGGCTTGGCGACGAGATGGAGCTGACTCCTCCCGGCGCCGGCGGCCCCCATCTGTAGGTTCGCCGCGGAGGTGGCCAGCCGTCGTCGTCGACGACGACGACGACCGCGGAGTGGCGTCTGCGGCGGCGCGCGGCGGAGGCGGCGGCGAGCAACGCATGGTCCGGGGAGAGCTTTGATCTGATGCAGTGTGTCCGTTTTCAATGCCAGTCTTCGCTCTTAGCTACTTGCAGTTGACTGCTGTCTCAGTCTGACTGTCAAGTTTATCTTTAATTTTCGCAAGTTTACTTTCATGTTTCTAAATTATCAGTTGTAATCGTCGATCGATGTAATAGCTCTAGATCTCCCGGATCAATAATATGAAAACTGCATC]

[+] EMBL AK107234             [TTCTCACGCCGCACACACTGCGGCCCCTGCATCGCTAGCGTGAGCGAGAACGAGAACGAGAGACGCACGTAGTGGTACCTTTTGCGAACGGTAGCGAGAGCGAGAGATCGCGTGGTTTTTTTTGATCGCTAGCTGTGTTAGCCATGGCGCCGGGTGCTGGGTCGTCGTCGTCGGCGAGGAGGGGCAGGCGCGTCGCCGCCGCCGAGCCGCCCCGCCGCGCGCTCAGGATGCGCGCGTCGTCGCCGATGTACTACACGTCCGACGACGAGGACTTGCCGGAGATTGTCCTGACGCCCCCGGCTCCGGCGCCGCCGCGCACCGGTACCCGCTCGCTGCGGATGCACGCGTCGCCGCCCGACTATGGGCGCCGCCGTACCAACCGACCCCGCCGCGTGGCACGGACGAGGTCGCCGCCGGTGGTGCAGGAGGCGGAGAGGGAGCCGCCGGCGCCGCAGCAGCCGGCGGCGGTGGTGGTGGAGCGCGTGTTTTACATGGTGGGCAGCCCGCCGGACGTCATCACGGCCACGGGGGAAGGGCCGGGGGGGCGCACGGTGGCGGGCTTCCGTTGCAGGAGGCTCACGTCCACGCGCACCCTCGTCGACGGCGAGGACGCCGCCGCCCGCGCCGCCGCCATCAGCGGCGCCCGCGCCCTGGTCATGTGCAGCTGCCACGGCGCGCCCTTCACCCACGCCGAGTTCCTGCTCCACGCCGGCGGCACCGACCTGGGCCGCAACGTCACCGGCTACCCGTGGCTTGGCGACGAGATGGAGCTGACTCCTCCCGGCGCCGGCGGCCCCCATCTGTAGGTTCGCCGCGGAGGTGGCCAGCCGTCGTCGTCGACGACGACGACGACCGCGGAGTGGCGTCTGCGGCGGCGCGCGGCGGAGGCGGCGGCGAGCAACGCATGGTCCGGGGAGAGCTTTGATCTGATGCAGTGTGTCCGTTTTCAATGCCAGTCTTCGCTCTTAGCTACTTGCAGTTGACTGCTGTCTCAGTCTGACTGTCAAGTTTATCTTTAATTTTCGCAAGTTTACTTTCATGTTTCTAAATTATCAGTTGTAATCGTCGATCGATGTAATAGCTCTAGATCTCCCGGATCAATAATATGAAAACTGCATC]




>consensus_3501#0
TTCTCACGCCGCACACACTGCGGCCCCTGCATCGCTAGCGTGAGCGAGAACGAGAACGAG
AGACGCACGTAGTGGTACCTTTTGCGAACGGTAGCGAGAGCGAGAGATCGCGTGGTTTTT
TTTGATCGCTAGCTGTGTTAGCCATGGCGCCGGGTGCTGGGTCGTCGTCGTCGGCGAGGA
GGGGCAGGCGCGTCGCCGCCGCCGAGCCGCCCCGCCGCGCGCTCAGGATGCGCGCGTCGT
CGCCGATGTACTACACGTCCGACGACGAGGACTTGCCGGAGATTGTCCTGACGCCCCCGG
CTCCGGCGCCGCCGCGCACCGGTACCCGCTCGCTGCGGATGCACGCGTCGCCGCCCGACT
ATGGGCGCCGCCGTACCAACCGACCCCGCCGCGTGGCACGGACGAGGTCGCCGCCGGTGG
TGCAGGAGGCGGAGAGGGAGCCGCCGGCGCCGCAGCAGCCGGCGGCGGTGGTGGTGGAGC
GCGTGTTTTACATGGTGGGCAGCCCGCCGGACGTCATCACGGCCACGGGGGAAGGGCCGG
GGGGGCGCACGGTGGCGGGCTTCCGTTGCAGGAGGCTCACGTCCACGCGCACCCTCGTCG
ACGGCGAGGACGCCGCCGCCCGCGCCGCCGCCATCAGCGGCGCCCGCGCCCTGGTCATGT
GCAGCTGCCACGGCGCGCCCTTCACCCACGCCGAGTTCCTGCTCCACGCCGGCGGCACCG
ACCTGGGCCGCAACGTCACCGGCTACCCGTGGCTTGGCGACGAGATGGAGCTGACTCCTC
CCGGCGCCGGCGGCCCCCATCTGTAGGTTCGCCGCGGAGGTGGCCAGCCGTCGTCGTCGA
CGACGACGACGACCGCGGAGTGGCGTCTGCGGCGGCGCGCGGCGGAGGCGGCGGCGAGCA
ACGCATGGTCCGGGGAGAGCTTTGATCTGATGCAGTGTGTCCGTTTTCAATGCCAGTCTT
CGCTCTTAGCTACTTGCAGTTGACTGCTGTCTCAGTCTGACTGTCAAGTTTATCTTTAAT
TTTCGCAAGTTTACTTTCATGTTTCTAAATTATCAGTTGTAATCGTCGATCGATGTAATA
GCTCTAGATCTCCCGGATCAATAATATGAAAACTGCATC

consensusID : consensus_3501#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence

                              [TTCCAGTTGCAGGAGGCTCACGTCCACGCGCACCCTCGTCGACGGCGAGGACGCCCCAGCCCAGCAGCCACCAGCCATCAGCAGGCGCCCAGCAGCCCTGGTCATGTGCAAGCTGCCACGGCGCGCCCTTCACCCACGCCGAGTTCCTGCATCCACAGCCAGGCAGGCACCAGACCTGGGCCAGCAACGTCACCAGGCTACCCAGTGGCTTGGCGACGAGATGGAGCTGACATCCATCCCAGGCAGCCAGGCAGGCCCCCAATCATGTAGGTTCAGCCAGCGGAGGTGGCCAGCCAGTCGTCGTCGACGACGACGACGACCGCGGAGTGGCGTCTGCGGCGGCGAGCAACGCATGGTCCGGGGAGAGCTTTGATCTGATGCAGTGTGTCCGTTTTCAATGCCAGTCTTCGCTCTTAGCTACTTGCAGTTGACTGCTGTCTCAGTCTGACTGTCAAGTTTATCTTTAATTTTCGCAAGTTTACTTTCATGTTTCTAAATTATCAGTTGTAATCGTCGATCGATGTAATAGCTCTAGATCTCCCGGATCATAATATGAAAACTACATCTTTGTTTTTTAAGAAAAAA]

[+] EMBL BI800328             [TTCCAGTTGCAGGAGGCTCACGTCCACGCGCACCCTCGTCGACGGCGAGGACGCCCCAGCCCAGCAGCCACCAGCCATCAGCAGGCGCCCAGCAGCCCTGGTCATGTGCAAGCTGCCACGGCGCGCCCTTCACCCACGCCGAGTTCCTGCATCCACAGCCAGGCAGGCACCAGACCTGGGCCAGCAACGTCACCAGGCTACCCAGTGGCTTGGCGACGAGATGGAGCTGACATCCATCCCAGGCAGCCAGGCAGGCCCCCAATCATGTAGGTTCAGCCAGCGGAGGTGGCCAGCCAGTCGTCGTCGACGACGACGACGACCGCGGAGTGGCGTCTGCGGCGGCGAGCAACGCATGGTCCGGGGAGAGCTTTGATCTGATGCAGTGTGTCCGTTTTCAATGCCAGTCTTCGCTCTTAGCTACTTGCAGTTGACTGCTGTCTCAGTCTGACTGTCAAGTTTATCTTTAATTTTCGCAAGTTTACTTTCATGTTTCTAAATTATCAGTTGTAATCGTCGATCGATGTAATAGCTCTAGATCTCCCGGATCATAATATGAAAACTACATCTTTGTTTTTTAAGAAAAAA]




>consensus_3501#1
TTCCAGTTGCAGGAGGCTCACGTCCACGCGCACCCTCGTCGACGGCGAGGACGCCCCAGC
CCAGCAGCCACCAGCCATCAGCAGGCGCCCAGCAGCCCTGGTCATGTGCAAGCTGCCACG
GCGCGCCCTTCACCCACGCCGAGTTCCTGCATCCACAGCCAGGCAGGCACCAGACCTGGG
CCAGCAACGTCACCAGGCTACCCAGTGGCTTGGCGACGAGATGGAGCTGACATCCATCCC
AGGCAGCCAGGCAGGCCCCCAATCATGTAGGTTCAGCCAGCGGAGGTGGCCAGCCAGTCG
TCGTCGACGACGACGACGACCGCGGAGTGGCGTCTGCGGCGGCGAGCAACGCATGGTCCG
GGGAGAGCTTTGATCTGATGCAGTGTGTCCGTTTTCAATGCCAGTCTTCGCTCTTAGCTA
CTTGCAGTTGACTGCTGTCTCAGTCTGACTGTCAAGTTTATCTTTAATTTTCGCAAGTTT
ACTTTCATGTTTCTAAATTATCAGTTGTAATCGTCGATCGATGTAATAGCTCTAGATCTC
CCGGATCATAATATGAAAACTACATCTTTGTTTTTTAAGAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3501#0      TTCTCACGCCGCACACACTGCGGCCCCTGCATCGCTAGCGTGAGCGAGAACGAGAACGAG 60
consensus_3501#1      ------------------------------------------------------------
                                                                                  

consensus_3501#0      AGACGCACGTAGTGGTACCTTTTGCGAACGGTAGCGAGAGCGAGAGATCGCGTGGTTTTT 120
consensus_3501#1      ------------------------------------------------------------
                                                                                  

consensus_3501#0      TTTGATCGCTAGCTGTGTTAGCCATGGCGCCGGGTGCTGGGTCGTCGTCGTCGGCGAGGA 180
consensus_3501#1      ------------------------------------------------------------
                                                                                  

consensus_3501#0      GGGGCAGGCGCGTCGCCGCCGCCGAGCCGCCCCGCCGCGCGCTCAGGATGCGCGCGTCGT 240
consensus_3501#1      ------------------------------------------------------------
                                                                                  

consensus_3501#0      CGCCGATGTACTACACGTCCGACGACGAGGACTTGCCGGAGATTGTCCTGACGCCCCCGG 300
consensus_3501#1      ------------------------------------------------------------
                                                                                  

consensus_3501#0      CTCCGGCGCCGCCGCGCACCGGTACCCGCTCGCTGCGGATGCACGCGTCGCCGCCCGACT 360
consensus_3501#1      ------------------------------------------------------------
                                                                                  

consensus_3501#0      ATGGGCGCCGCCGTACCAACCGACCCCGCCGCGTGGCACGGACGAGGTCGCCGCCGGTGG 420
consensus_3501#1      ------------------------------------------------------------
                                                                                  

consensus_3501#0      TGCAGGAGGCGGAGAGGGAGCCGCCGGCGCCGCAGCAGCCGGCGGCGGTGGTGGTGGAGC 480
consensus_3501#1      ------------------------------------------------------------
                                                                                  

consensus_3501#0      GCGTGTTTTACATGGTGGGCAGCCCGCCGGACGTCATCACGGCCACGGGGGAAGGGCCGG 540
consensus_3501#1      ------------------------------------------------------------
                                                                                  

consensus_3501#0      GGGGGCGCACGGTGGCGGGCTTCCGTTGCAGGAGGCTCACGTCCACGCGCACCCTCGTCG 600
consensus_3501#1      -------------------TTCCAGTTGCAGGAGGCTCACGTCCACGCGCACCCTCGTCG 41
                                          * * ************************************

consensus_3501#0      ACGGCGAGGACGCCGCCGCCCGC--GCCGCC-GCCATCAGC-GGCGCCCGC--GCCCTGG 654
consensus_3501#1      ACGGCGAGGACGCCCCAGCCCAGCAGCCACCAGCCATCAGCAGGCGCCCAGCAGCCCTGG 101
                      ************** * ****    *** ** ********* *******    *******

consensus_3501#0      TCATGTGCA-GCTGCCACGGCGCGCCCTTCACCCACGCCGAGTTCCTGC-TCCAC-GCCG 711
consensus_3501#1      TCATGTGCAAGCTGCCACGGCGCGCCCTTCACCCACGCCGAGTTCCTGCATCCACAGCCA 161
                      ********* *************************************** ***** *** 

consensus_3501#0      GC--GGCACC-GACCTGGGCC-GCAACGTCACC-GGCTACCC-GTGGCTTGGCGACGAGA 765
consensus_3501#1      GGCAGGCACCAGACCTGGGCCAGCAACGTCACCAGGCTACCCAGTGGCTTGGCGACGAGA 221
                      *   ****** ********** *********** ******** *****************

consensus_3501#0      TGGAGCTGAC-TCCTCCCGGCGCCGGC-----GGCCCCCATC--TGTAGGTTCGCC--GC 815
consensus_3501#1      TGGAGCTGACATCCATCCCAGGCAGCCAGGCAGGCCCCCAATCATGTAGGTTCAGCCAGC 281
                      ********** ***  **   ** * *     ********    *********  *  **

consensus_3501#0      GGAGGTGGCCAGCC-GTCGTCGTCGACGACGACGACGACCGCGGAGTGGCGTCTGCGGCG 874
consensus_3501#1      GGAGGTGGCCAGCCAGTCGTCGTCGACGACGACGACGACCGCGGAGTGGCGTCTGCGGCG 341
                      ************** *********************************************

consensus_3501#0      GCGCGCGGCGGAGGCGGCGGCGAGCAACGCATGGTCCGGGGAGAGCTTTGATCTGATGCA 934
consensus_3501#1      GCG-------------------AGCAACGCATGGTCCGGGGAGAGCTTTGATCTGATGCA 382
                      ***                   **************************************

consensus_3501#0      GTGTGTCCGTTTTCAATGCCAGTCTTCGCTCTTAGCTACTTGCAGTTGACTGCTGTCTCA 994
consensus_3501#1      GTGTGTCCGTTTTCAATGCCAGTCTTCGCTCTTAGCTACTTGCAGTTGACTGCTGTCTCA 442
                      ************************************************************

consensus_3501#0      GTCTGACTGTCAAGTTTATCTTTAATTTTCGCAAGTTTACTTTCATGTTTCTAAATTATC 1054
consensus_3501#1      GTCTGACTGTCAAGTTTATCTTTAATTTTCGCAAGTTTACTTTCATGTTTCTAAATTATC 502
                      ************************************************************

consensus_3501#0      AGTTGTAATCGTCGATCGATGTAATAGCTCTAGATCTCCCGGATCAATAATATGAAAACT 1114
consensus_3501#1      AGTTGTAATCGTCGATCGATGTAATAGCTCTAGATCTCCCGGATCA-TAATATGAAAACT 561
                      ********************************************** *************

consensus_3501#0      GCATC------------------- 1119
consensus_3501#1      ACATCTTTGTTTTTTAAGAAAAAA 585
                       ****