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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3517#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 717 fasta sequence
[CTGCAAAATTGTACTGCATCAAAATGGTTTATTACTGATCGATCGTCTCTCGATCTGAATTTCGTTTTCACTCCTGAAATCCAAGAACTTGTCAGGCTTGTCCTGCAGCTTCAGTTTTTGACTTGTCAAAATTACAAGATAAGTGCAAGTATTAATCACACTGACTTGCTGGCTAGTGGCTACACTCTTGAGCTGGTAGTACAGTATCTACTAATAATTGGCAGCTAGGTTACTGTAGCTGTCGTAGATTGGCTCAAGCTAGCTGCGGCCATGGCGACCTTGCTGCTGCTGGCCGTGGCGGCGGCGGCGGCCGCCTTGGTTTTGTGGGGGCCGTACCCTTTGCCGGCGCCGGCCGTGGCCAAGAAGCTGGCCGCCATGGGGTTCCGGGCCCCCCGCCCGCGGGTTCTGCCGGGTTGCAACAACAAGTTCCGCGGCGAAAGCGAAGCGAAGCCGAANGGCTTGCCATNGANTTCGGGAAAAAAATACTCCCCGCTTTTTCCCCNTTCTCCCTGAAAGACTTTTNGTACCCCCCCCTTGNCNCCAAAAGAAAGGANACGNAAAATTTCCTGGCTTANCCAAGCTNANGAAAATTCCTGCCCNTTTTTCCCAATGCGGATCGNNAAAAAAAGCCAAACNCCTTGCCCTAATTAATTCCNANTCANACGCNGGTNNCNNAACNCNCCTNNCCGTTCGGTTCCCNTTTACCCANTCCCNAAN]
[+] EMBL BE229265 [CTGCAAAATTGTACTGCATCAAAATGGTTTATTACTGATCGATCGTCTCTCGATCTGAATTTCGTTTTCACTCCTGAAATCCAAGAACTTGTCAGGCTTGTCCTGCAGCTTCAGTTTTTGACTTGTCAAAATTACAAGATAAGTGCAAGTATTAATCACACTGACTTGCTGGCTAGTGGCTACACTCTTGAGCTGGTAGTACAGTATCTACTAATAATTGGCAGCTAGGTTACTGTAGCTGTCGTAGATTGGCTCAAGCTAGCTGCGGCCATGGCGACCTTGCTGCTGCTGGCCGTGGCGGCGGCGGCGGCCGCCTTGGTTTTGTGGGGGCCGTACCCTTTGCCGGCGCCGGCCGTGGCCAAGAAGCTGGCCGCCATGGGGTTCCGGGCCCCCCGCCCGCGGGTTCTGCCGGGTTGCAACAACAAGTTCCGCGGCGAAAGCGAAGCGAAGCCGAANGGCTTGCCATNGANTTCGGGAAAAAAATACTCCCCGCTTTTTCCCCNTTCTCCCTGAAAGACTTTTNGTACCCCCCCCTTGNCNCCAAAAGAAAGGANACGNAAAATTTCCTGGCTTANCCAAGCTNANGAAAATTCCTGCCCNTTTTTCCCAATGCGGATCGNNAAAAAAAGCCAAACNCCTTGCCCTAATTAATTCCNANTCANACGCNGGTNNCNNAACNCNCCTNNCCGTTCGGTTCCCNTTTACCCANTCCCNAAN]
consensusID : consensus_3517#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence
[TTTTTTTTTTTACTGGATCAAAAGTGGTTTATTACTGATCGATCGTCTCTCGATCTGAATTTCGTTTTCACTCCTGAAATCCAAGAACTTGTCAGGCTTGTCCTGCAGCTTCAGTTTTGACTTGTCAAAATTACAAGATAAGTGCAAGTATTAATCACACTGACTTGCTGGCTAGGTGGCTACACTCTTGAGCTGGTAGTACAGTATCTACTAATAATNGGCAGCTAGGTTACTGTAGCTGTCGTAGATNGGCTCAAGCTAGCTGCGGCCATGGCGACCTTGCTGCTGCTGGCCGTGGCGGCGGCGGCGGGGCGTGGGTGTGGTGGGGGCGGTACGCGTGGCGGGCGCGGGCGGTGGCGAGGAGGCTGGCGGCGCAGGGGGTGCGGGGCCCGCGGCGCGGCGGGTTGCTGCGGGGTTGCAACGAGAGGTGCGGGGCGGAAGGGGGAGGCGGAGGCGGACGGGGTGGCATGGACGTCGGGACACGATACCTCCGCGGTCGTACCGCACTTCGTCGCCTGGAAGAACTGGACGGGTAGGACCCCCCTTCTGGGCTTCAGAACGGAATGGATACGGGGAAGACCTACTGGGGTGAAGCTCAAGGTTGCANGGCAACGGTCTGGCCANGGNGTATCCGAAG]
[-] EMBL BI806370 [TTTTTTTTTTTACTGGATCAAAAGTGGTTTATTACTGATCGATCGTCTCTCGATCTGAATTTCGTTTTCACTCCTGAAATCCAAGAACTTGTCAGGCTTGTCCTGCAGCTTCAGTTTTGACTTGTCAAAATTACAAGATAAGTGCAAGTATTAATCACACTGACTTGCTGGCTAGGTGGCTACACTCTTGAGCTGGTAGTACAGTATCTACTAATAATNGGCAGCTAGGTTACTGTAGCTGTCGTAGATNGGCTCAAGCTAGCTGCGGCCATGGCGACCTTGCTGCTGCTGGCCGTGGCGGCGGCGGCGGGGCGTGGGTGTGGTGGGGGCGGTACGCGTGGCGGGCGCGGGCGGTGGCGAGGAGGCTGGCGGCGCAGGGGGTGCGGGGCCCGCGGCGCGGCGGGTTGCTGCGGGGTTGCAACGAGAGGTGCGGGGCGGAAGGGGGAGGCGGAGGCGGACGGGGTGGCATGGACGTCGGGACACGATACCTCCGCGGTCGTACCGCACTTCGTCGCCTGGAAGAACTGGACGGGTAGGACCCCCCTTCTGGGCTTCAGAACGGAATGGATACGGGGAAGACCTACTGGGGTGAAGCTCAAGGTTGCANGGCAACGGTCTGGCCANGGNGTATCCGAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3517#0 CTGCAAAATTGTACTGCATCAAAA-TGGTTTATTACTGATCGATCGTCTCTCGATCTGAA 59
consensus_3517#1 -TTTTTTTTTTTACTGGATCAAAAGTGGTTTATTACTGATCGATCGTCTCTCGATCTGAA 59
* ** ***** ******* ***********************************
consensus_3517#0 TTTCGTTTTCACTCCTGAAATCCAAGAACTTGTCAGGCTTGTCCTGCAGCTTCAGTTTTT 119
consensus_3517#1 TTTCGTTTTCACTCCTGAAATCCAAGAACTTGTCAGGCTTGTCCTGCAGCTTCAGTTTT- 118
***********************************************************
consensus_3517#0 GACTTGTCAAAATTACAAGATAAGTGCAAGTATTAATCACACTGACTTGCTGGCTAG-TG 178
consensus_3517#1 GACTTGTCAAAATTACAAGATAAGTGCAAGTATTAATCACACTGACTTGCTGGCTAGGTG 178
********************************************************* **
consensus_3517#0 GCTACACTCTTGAGCTGGTAGTACAGTATCTACTAATAATTGGCAGCTAGGTTACTGTAG 238
consensus_3517#1 GCTACACTCTTGAGCTGGTAGTACAGTATCTACTAATAATNGGCAGCTAGGTTACTGTAG 238
**************************************** *******************
consensus_3517#0 CTGTCGTAGATTGGCTCAAGCTAGCTGCGGCCATGGCGACCTTGCTGCTGCTGGCCGTGG 298
consensus_3517#1 CTGTCGTAGATNGGCTCAAGCTAGCTGCGGCCATGGCGACCTTGCTGCTGCTGGCCGTGG 298
*********** ************************************************
consensus_3517#0 CGGCGGCGGCGGCCGCCTTGGTTTTGTGGGGGCCGTACCCTTTGCCGGCGCCGGCCGTGG 358
consensus_3517#1 CGGCGGCGGCGGG-GCGTGGGTGTGGTGGGGGCGGTACGCGTGGCGGGCGCGGGCGGTGG 357
************ ** * *** * ******** **** * * ** ***** *** ****
consensus_3517#0 CCAAGAAGCTGGCCGC-CATGGGGTTCCGGGCCCCCCGCCCG-CGGGTT-CTGCCGGGTT 415
consensus_3517#1 CGAGGAGGCTGGCGGCGCAGGGGGTGCGGGGCCCGCGGCGCGGCGGGTTGCTGCGGGGTT 417
* * ** ****** ** ** ***** * ****** * ** ** ****** **** *****
consensus_3517#0 GCAACAACAAGTTCCGCGGCGAAAGCGAAG-CGAAGCCGAANGGCTTGCCATNGANTTCG 474
consensus_3517#1 GCAACGAGAGGTGCGGGGCGGAAGGGGGAGGCGGAGGCGGACGGGGTGGCATGGACGTCG 477
***** * * ** * * * *** * * ** ** ** ** * ** ** *** ** ***
consensus_3517#0 GGAAAAAAATACTCCCCGCTTTTTCCCCNTTCTC---CCTGAAAGACTT-------TTNG 524
consensus_3517#1 GGACACGATACCTCCGCGGTCGTACCGCACTTCGTCGCCTGGAAGAACTGGACGGGTAGG 537
*** * * **** ** * * ** * * **** **** * * *
consensus_3517#0 TACCCCCCCCTTGNCNCCAAAA--GAAAGGANACGNAAAATTTCCTGGCTTANCCAAGCT 582
consensus_3517#1 ACCCCCCTTCTGGGCTTCAGAACGGAATGGATACGGGGAAGA-CCTACTGGGGTGAAGCT 596
***** ** * * ** ** *** *** *** ** *** *****
consensus_3517#0 NANGAAAATTCCTGCCCNTTTTTCCCAATGCGGATCGNNAAAAAAAGCCAAACNCCTTGC 642
consensus_3517#1 CAAGGTTGCANGGCAACGGTCTGGCCANGGNGTATCCGAAG------------------- 637
* * * * * *** * * *** *
consensus_3517#0 CCTAATTAATTCCNANTCANACGCNGGTNNCNNAACNCNCCTNNCCGTTCGGTTCCCNTT 702
consensus_3517#1 ------------------------------------------------------------
consensus_3517#0 TACCCANTCCCNAAN 717
consensus_3517#1 ---------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||