cluster # 3541

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Oryza sativa
cluster # 3541 cluster # 3541 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3541#0 length = 803 sequences # 1

consensus_3541#1 length = 730 sequences # 1

consensusID : consensus_3541#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 803
fasta sequence

                              [CTTTAATTTATTTGAACAATTAGGAATGATACAAAGGATTGCTATATAGCTGTCCTGACATAGCGAGAAGCAGCTTAACTTGCTCGGTATGTATTTTGTTTTTAGGTTCAAACAATACAATCTAATTGTTCATACTAATATGCATATTTACATATGTTCTCAAATGTGCCCGCAACGAAGCTCGGGGTTTCATCTAGTTATTAGAAAGCTATATTCCACCGATCCAACACCGTTACGACAACAATCTCATTCTGACATCTTGACAGTGTCGATGACTCGTGTCCCTCTTGCAAAAGTCTCGTAGAAGCCACTTAAGTAGTCCTTGATCTTCATCTTGGCATACTGCCTCGGCCTCTTCTCATCGTCCACCAGCTCCGGCGCCGGCTCCAGCTCCTTCTCCGGATCCAGCGCGTAGAACATCACCACCGACACTCGCTCCCTCTCGGCGTTCGTCACCACCCTATGCACCGGGCTCTTTAACAACCCATTGCTCATTATCTGCATCCCAGAATAGGTGTCTGTTAGTCATATCTTTTTAGATAATGGAAATGATTTACATCTCCGACCTCTGCTACTTAGTCGGACTAATTCCCTAAAAGATCAAATATAATCAGACGTGTAAATGATGATGTACTCAAAATTGAAGCTTTACAGGTCTACTTTACGTGCAATTCAGATTGTTGTTCAGATCTCCCAAATCTCTGATCCCTCCAAAGATTTCTTCAGGAGAAGATAAAAGGAATCATGATATACTTTAGGAATCATGGTAGAATACTTTTGGAACACCGTAAATATTTTGGTTT]

[+] EMBL CB619046             [CTTTAATTTATTTGAACAATTAGGAATGATACAAAGGATTGCTATATAGCTGTCCTGACATAGCGAGAAGCAGCTTAACTTGCTCGGTATGTATTTTGTTTTTAGGTTCAAACAATACAATCTAATTGTTCATACTAATATGCATATTTACATATGTTCTCAAATGTGCCCGCAACGAAGCTCGGGGTTTCATCTAGTTATTAGAAAGCTATATTCCACCGATCCAACACCGTTACGACAACAATCTCATTCTGACATCTTGACAGTGTCGATGACTCGTGTCCCTCTTGCAAAAGTCTCGTAGAAGCCACTTAAGTAGTCCTTGATCTTCATCTTGGCATACTGCCTCGGCCTCTTCTCATCGTCCACCAGCTCCGGCGCCGGCTCCAGCTCCTTCTCCGGATCCAGCGCGTAGAACATCACCACCGACACTCGCTCCCTCTCGGCGTTCGTCACCACCCTATGCACCGGGCTCTTTAACAACCCATTGCTCATTATCTGCATCCCAGAATAGGTGTCTGTTAGTCATATCTTTTTAGATAATGGAAATGATTTACATCTCCGACCTCTGCTACTTAGTCGGACTAATTCCCTAAAAGATCAAATATAATCAGACGTGTAAATGATGATGTACTCAAAATTGAAGCTTTACAGGTCTACTTTACGTGCAATTCAGATTGTTGTTCAGATCTCCCAAATCTCTGATCCCTCCAAAGATTTCTTCAGGAGAAGATAAAAGGAATCATGATATACTTTAGGAATCATGGTAGAATACTTTTGGAACACCGTAAATATTTTGGTTT]




>consensus_3541#0
CTTTAATTTATTTGAACAATTAGGAATGATACAAAGGATTGCTATATAGCTGTCCTGACA
TAGCGAGAAGCAGCTTAACTTGCTCGGTATGTATTTTGTTTTTAGGTTCAAACAATACAA
TCTAATTGTTCATACTAATATGCATATTTACATATGTTCTCAAATGTGCCCGCAACGAAG
CTCGGGGTTTCATCTAGTTATTAGAAAGCTATATTCCACCGATCCAACACCGTTACGACA
ACAATCTCATTCTGACATCTTGACAGTGTCGATGACTCGTGTCCCTCTTGCAAAAGTCTC
GTAGAAGCCACTTAAGTAGTCCTTGATCTTCATCTTGGCATACTGCCTCGGCCTCTTCTC
ATCGTCCACCAGCTCCGGCGCCGGCTCCAGCTCCTTCTCCGGATCCAGCGCGTAGAACAT
CACCACCGACACTCGCTCCCTCTCGGCGTTCGTCACCACCCTATGCACCGGGCTCTTTAA
CAACCCATTGCTCATTATCTGCATCCCAGAATAGGTGTCTGTTAGTCATATCTTTTTAGA
TAATGGAAATGATTTACATCTCCGACCTCTGCTACTTAGTCGGACTAATTCCCTAAAAGA
TCAAATATAATCAGACGTGTAAATGATGATGTACTCAAAATTGAAGCTTTACAGGTCTAC
TTTACGTGCAATTCAGATTGTTGTTCAGATCTCCCAAATCTCTGATCCCTCCAAAGATTT
CTTCAGGAGAAGATAAAAGGAATCATGATATACTTTAGGAATCATGGTAGAATACTTTTG
GAACACCGTAAATATTTTGGTTT

consensusID : consensus_3541#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 730
fasta sequence

                              [TTTTTTATGGCATATCACTTTAATTTATTTGCACAATTAGGAATGATACAAAGGATTGCTATATAGCTGTCCTGACATAGCGAGAAGCAGCTTAACTTGCTCGGTATGTATTTTGTTTTTAGGTTCAAACAATACAATCTAATTGTTCATACTAATATGCATATTTACATATGTTCTCAAATGTGCCCGCAACGAAGCTCGGGGTTTCATCTAGTTATTAGAAAGCTATATTCCACCGATCCAACACCGTTACGACAACAATCTCATTCTGACATCTTGACAGTGTCGATGACTCGTGTCCCTCTTGCAAAAGTCTCGTAGAAGCCACTTAAGTAGTCCTTGATCTTCATCTTGGCATACTGCCTCGGCCTCTTCTCATCGTCCACCAGCTCCGGCGCCGGCTCCAGCTCCTTCTCCGGATCCAGCGCGTAGAACATCACCACCGACACTCGCTCCCTCTCGGCGTTCGTCACCACCCTATGCACCGGGCTCTTTAACAACCCATTGCTCATTATCTCCATTCCATCCCCCATGTTGATGAGCAGAGCATTGGGGACGACGGGCACATCGTACCAGACGCCTTGCCTCAGCACCTGAAGCCCACTGACGGTGTCGTCGACGGAGACGACGGTGATCACCGAGCCGTCGGAGTGTGGCTTCAGGCCCAACACATCCTCCGGCCTCAGGCAGCGAGGGTAGTAGTTGAACCTCGCGTACGTCGTGGCGTCCT]

[+] EMBL CB683991             [TTTTTTATGGCATATCACTTTAATTTATTTGCACAATTAGGAATGATACAAAGGATTGCTATATAGCTGTCCTGACATAGCGAGAAGCAGCTTAACTTGCTCGGTATGTATTTTGTTTTTAGGTTCAAACAATACAATCTAATTGTTCATACTAATATGCATATTTACATATGTTCTCAAATGTGCCCGCAACGAAGCTCGGGGTTTCATCTAGTTATTAGAAAGCTATATTCCACCGATCCAACACCGTTACGACAACAATCTCATTCTGACATCTTGACAGTGTCGATGACTCGTGTCCCTCTTGCAAAAGTCTCGTAGAAGCCACTTAAGTAGTCCTTGATCTTCATCTTGGCATACTGCCTCGGCCTCTTCTCATCGTCCACCAGCTCCGGCGCCGGCTCCAGCTCCTTCTCCGGATCCAGCGCGTAGAACATCACCACCGACACTCGCTCCCTCTCGGCGTTCGTCACCACCCTATGCACCGGGCTCTTTAACAACCCATTGCTCATTATCTCCATTCCATCCCCCATGTTGATGAGCAGAGCATTGGGGACGACGGGCACATCGTACCAGACGCCTTGCCTCAGCACCTGAAGCCCACTGACGGTGTCGTCGACGGAGACGACGGTGATCACCGAGCCGTCGGAGTGTGGCTTCAGGCCCAACACATCCTCCGGCCTCAGGCAGCGAGGGTAGTAGTTGAACCTCGCGTACGTCGTGGCGTCCT]




>consensus_3541#1
TTTTTTATGGCATATCACTTTAATTTATTTGCACAATTAGGAATGATACAAAGGATTGCT
ATATAGCTGTCCTGACATAGCGAGAAGCAGCTTAACTTGCTCGGTATGTATTTTGTTTTT
AGGTTCAAACAATACAATCTAATTGTTCATACTAATATGCATATTTACATATGTTCTCAA
ATGTGCCCGCAACGAAGCTCGGGGTTTCATCTAGTTATTAGAAAGCTATATTCCACCGAT
CCAACACCGTTACGACAACAATCTCATTCTGACATCTTGACAGTGTCGATGACTCGTGTC
CCTCTTGCAAAAGTCTCGTAGAAGCCACTTAAGTAGTCCTTGATCTTCATCTTGGCATAC
TGCCTCGGCCTCTTCTCATCGTCCACCAGCTCCGGCGCCGGCTCCAGCTCCTTCTCCGGA
TCCAGCGCGTAGAACATCACCACCGACACTCGCTCCCTCTCGGCGTTCGTCACCACCCTA
TGCACCGGGCTCTTTAACAACCCATTGCTCATTATCTCCATTCCATCCCCCATGTTGATG
AGCAGAGCATTGGGGACGACGGGCACATCGTACCAGACGCCTTGCCTCAGCACCTGAAGC
CCACTGACGGTGTCGTCGACGGAGACGACGGTGATCACCGAGCCGTCGGAGTGTGGCTTC
AGGCCCAACACATCCTCCGGCCTCAGGCAGCGAGGGTAGTAGTTGAACCTCGCGTACGTC
GTGGCGTCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3541#0      -----------------CTTTAATTTATTTGAACAATTAGGAATGATACAAAGGATTGCT 43
consensus_3541#1      TTTTTTATGGCATATCACTTTAATTTATTTGCACAATTAGGAATGATACAAAGGATTGCT 60
                                       ************** ****************************

consensus_3541#0      ATATAGCTGTCCTGACATAGCGAGAAGCAGCTTAACTTGCTCGGTATGTATTTTGTTTTT 103
consensus_3541#1      ATATAGCTGTCCTGACATAGCGAGAAGCAGCTTAACTTGCTCGGTATGTATTTTGTTTTT 120
                      ************************************************************

consensus_3541#0      AGGTTCAAACAATACAATCTAATTGTTCATACTAATATGCATATTTACATATGTTCTCAA 163
consensus_3541#1      AGGTTCAAACAATACAATCTAATTGTTCATACTAATATGCATATTTACATATGTTCTCAA 180
                      ************************************************************

consensus_3541#0      ATGTGCCCGCAACGAAGCTCGGGGTTTCATCTAGTTATTAGAAAGCTATATTCCACCGAT 223
consensus_3541#1      ATGTGCCCGCAACGAAGCTCGGGGTTTCATCTAGTTATTAGAAAGCTATATTCCACCGAT 240
                      ************************************************************

consensus_3541#0      CCAACACCGTTACGACAACAATCTCATTCTGACATCTTGACAGTGTCGATGACTCGTGTC 283
consensus_3541#1      CCAACACCGTTACGACAACAATCTCATTCTGACATCTTGACAGTGTCGATGACTCGTGTC 300
                      ************************************************************

consensus_3541#0      CCTCTTGCAAAAGTCTCGTAGAAGCCACTTAAGTAGTCCTTGATCTTCATCTTGGCATAC 343
consensus_3541#1      CCTCTTGCAAAAGTCTCGTAGAAGCCACTTAAGTAGTCCTTGATCTTCATCTTGGCATAC 360
                      ************************************************************

consensus_3541#0      TGCCTCGGCCTCTTCTCATCGTCCACCAGCTCCGGCGCCGGCTCCAGCTCCTTCTCCGGA 403
consensus_3541#1      TGCCTCGGCCTCTTCTCATCGTCCACCAGCTCCGGCGCCGGCTCCAGCTCCTTCTCCGGA 420
                      ************************************************************

consensus_3541#0      TCCAGCGCGTAGAACATCACCACCGACACTCGCTCCCTCTCGGCGTTCGTCACCACCCTA 463
consensus_3541#1      TCCAGCGCGTAGAACATCACCACCGACACTCGCTCCCTCTCGGCGTTCGTCACCACCCTA 480
                      ************************************************************

consensus_3541#0      TGCACCGGGCTCTTTAACAACCCATTGCTCATTATCTGCATCCCAGAATAGGTGTCTGTT 523
consensus_3541#1      TGCACCGGGCTCTTTAACAACCCATTGCTCATTATCTCCATTCCATCCCCCATGT-TGAT 539
                      ************************************* *** ***       *** ** *

consensus_3541#0      AGTCATATCTTTTTAGATAATGGAAATGATTTAC---ATCTCCGACCTCTGCTACTTAGT 580
consensus_3541#1      GAGCAGAGCATTGGGGACGACGGGCACATCGTACCAGACGCCTTGCCTCAGCACCTGAAG 599
                         ** * * **   **  * **  *     ***   *   *   **** **  ** *  

consensus_3541#0      CGGACTAATTCCCTAAAAGATCAAATATAATCAGACGTGTAAATGATGATGTACTCAAAA 640
consensus_3541#1      CCCACTGACGGTGTCGTCGA-CGGAGACGA-CGGTGATCACCGAGCCGTCGGAGTGTGGC 657
                      *  *** *     *    ** *  * *  * * *   *      *  *  * * *     

consensus_3541#0      TTGAAGCTTTACAGGTCTACT--TTACGTGCAATTCAGATTGTTGTTCAGATCTCCCAAA 698
consensus_3541#1      TTCAGGCCCAACACATCCTCCGGCCTCAGGCAGCGAGGGTAGTAGTT-GAACCTCGCGTA 716
                      ** * **   ***  **  *      *  ***     * * ** ***   * *** *  *

consensus_3541#0      TCTCTGATCCCTCCAAAGATTTCTTCAGGAGAAGATAAAAGGAATCATGATATACTTTAG 758
consensus_3541#1      CGTCGTGGCGTCCT---------------------------------------------- 730
                        **    *   *                                               

consensus_3541#0      GAATCATGGTAGAATACTTTTGGAACACCGTAAATATTTTGGTTT 803
consensus_3541#1      ---------------------------------------------