cluster # 3543

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Oryza sativa
cluster # 3543 cluster # 3543 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3543#0 length = 372 sequences # 1

consensus_3543#1 length = 364 sequences # 1

consensusID : consensus_3543#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 372
fasta sequence

                              [GAGGTGTATCGATTGCTAAGTGTTAACAACAGAATTTCGCCGTCGTGTTTTACATCAACACTAAGAGGCAACACAACAACGTCTTGTATGGATGTAGTTGGATCGTCAATGTTTCTCCCAAATCATAGTTATCATCAACTCACTACAAAGATCGGGCCTATCATAGCCGTGAGCGTATCGAGTGGCGCTCAGGGTTTATCATCACCTCTAACAGGTTTGACCCTGATCAGAAATGAGTGGTCAATGATGACTCCACTCACCTTTGATAGGTCTCGGCCCGTCAGAGGTGACAGTCACCTCTGACGGGTTATACCATGTAACTTGTCCCAATCGAGGGAATCTATCTGAGGAACTTAGTTTTATCCCAAAAAA]

[+] EMBL BI803165             [GAGGTGTATCGATTGCTAAGTGTTAACAACAGAATTTCGCCGTCGTGTTTTACATCAACACTAAGAGGCAACACAACAACGTCTTGTATGGATGTAGTTGGATCGTCAATGTTTCTCCCAAATCATAGTTATCATCAACTCACTACAAAGATCGGGCCTATCATAGCCGTGAGCGTATCGAGTGGCGCTCAGGGTTTATCATCACCTCTAACAGGTTTGACCCTGATCAGAAATGAGTGGTCAATGATGACTCCACTCACCTTTGATAGGTCTCGGCCCGTCAGAGGTGACAGTCACCTCTGACGGGTTATACCATGTAACTTGTCCCAATCGAGGGAATCTATCTGAGGAACTTAGTTTTATCCCAAAAAA]




>consensus_3543#0
GAGGTGTATCGATTGCTAAGTGTTAACAACAGAATTTCGCCGTCGTGTTTTACATCAACA
CTAAGAGGCAACACAACAACGTCTTGTATGGATGTAGTTGGATCGTCAATGTTTCTCCCA
AATCATAGTTATCATCAACTCACTACAAAGATCGGGCCTATCATAGCCGTGAGCGTATCG
AGTGGCGCTCAGGGTTTATCATCACCTCTAACAGGTTTGACCCTGATCAGAAATGAGTGG
TCAATGATGACTCCACTCACCTTTGATAGGTCTCGGCCCGTCAGAGGTGACAGTCACCTC
TGACGGGTTATACCATGTAACTTGTCCCAATCGAGGGAATCTATCTGAGGAACTTAGTTT
TATCCCAAAAAA

consensusID : consensus_3543#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 364
fasta sequence

                              [AGGTGTATCGATTGCTAAGTGTTAACAACAGAATTTCCCCGTCGTGTTTTACATGCAACACTAAGAGGCAACACAACAACGTCTTGTATGGATGTAGTTGGATCGTCAATGTTTCTCCCAAATCATAGTTATCATCAACTCACTACAAAGATCGGCCCTATCATACCCGTGAGCGTATCGAGTGGCGCTCCAGGTTTATCATCACCTTAACAGGTTGACCTGATCAAGAAATGAGTGGTCAATGGAGGACCCACTCACCTTTGATAGTCTCGCCCCTCAGAGTACAGTCACCTCTGCCGGGTTACCCAGGTAACTTGTCCCAAATCGAGGAATTATCTGAGAACTTAGTTTTACCCCCAAAAAA]

[+] EMBL BI803924             [AGGTGTATCGATTGCTAAGTGTTAACAACAGAATTTCCCCGTCGTGTTTTACATGCAACACTAAGAGGCAACACAACAACGTCTTGTATGGATGTAGTTGGATCGTCAATGTTTCTCCCAAATCATAGTTATCATCAACTCACTACAAAGATCGGCCCTATCATACCCGTGAGCGTATCGAGTGGCGCTCCAGGTTTATCATCACCTTAACAGGTTGACCTGATCAAGAAATGAGTGGTCAATGGAGGACCCACTCACCTTTGATAGTCTCGCCCCTCAGAGTACAGTCACCTCTGCCGGGTTACCCAGGTAACTTGTCCCAAATCGAGGAATTATCTGAGAACTTAGTTTTACCCCCAAAAAA]




>consensus_3543#1
AGGTGTATCGATTGCTAAGTGTTAACAACAGAATTTCCCCGTCGTGTTTTACATGCAACA
CTAAGAGGCAACACAACAACGTCTTGTATGGATGTAGTTGGATCGTCAATGTTTCTCCCA
AATCATAGTTATCATCAACTCACTACAAAGATCGGCCCTATCATACCCGTGAGCGTATCG
AGTGGCGCTCCAGGTTTATCATCACCTTAACAGGTTGACCTGATCAAGAAATGAGTGGTC
AATGGAGGACCCACTCACCTTTGATAGTCTCGCCCCTCAGAGTACAGTCACCTCTGCCGG
GTTACCCAGGTAACTTGTCCCAAATCGAGGAATTATCTGAGAACTTAGTTTTACCCCCAA
AAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3543#0      GAGGTGTATCGATTGCTAAGTGTTAACAACAGAATTTCGCCGTCGTGTTTTACAT-CAAC 59
consensus_3543#1      -AGGTGTATCGATTGCTAAGTGTTAACAACAGAATTTCCCCGTCGTGTTTTACATGCAAC 59
                       ************************************* **************** ****

consensus_3543#0      ACTAAGAGGCAACACAACAACGTCTTGTATGGATGTAGTTGGATCGTCAATGTTTCTCCC 119
consensus_3543#1      ACTAAGAGGCAACACAACAACGTCTTGTATGGATGTAGTTGGATCGTCAATGTTTCTCCC 119
                      ************************************************************

consensus_3543#0      AAATCATAGTTATCATCAACTCACTACAAAGATCGGGCCTATCATAGCCGTGAGCGTATC 179
consensus_3543#1      AAATCATAGTTATCATCAACTCACTACAAAGATCGGCCCTATCATACCCGTGAGCGTATC 179
                      ************************************ ********* *************

consensus_3543#0      GAGTGGCGCTCAGGGTTTATCATCACCTCTAACAGGTTTGACCCTGATCAGAAATGAGTG 239
consensus_3543#1      GAGTGGCGCTCCAGGTTTATCATCACCT-TAACAGGTT-GACCTGATCAAGAAATGAGTG 237
                      ***********  *************** ********* ****      ***********

consensus_3543#0      GTCAATGATGACTCCACTCACCTTTGATAGGTCTCGGCCCGTCAGAGGTGACAGTCACCT 299
consensus_3543#1      GTCAATGGAGGACCCACTCACCTTTGATAG-TCTCGCCCC-TCAGAGT--ACAGTCACCT 293
                      *******  *   ***************** ***** *** ******   **********

consensus_3543#0      CTGACGGGTTATACCATGTAACTTGTCCCAATCGAGGGAATCTATCTGAGGAACTTAGTT 359
consensus_3543#1      CTGCCGGGTTAC-CCAGGTAACTTGTCCCAAATCGAGGAAT-TATCTGAG-AACTTAGTT 350
                      *** *******  *** **************     ***** ******** *********

consensus_3543#0      TTATCCCAAAAAA- 372
consensus_3543#1      TTACCCCCAAAAAA 364
                      *** *** *****