cluster # 3556

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Oryza sativa
cluster # 3556 cluster # 3556 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3556#0 length = 795 sequences # 1

consensus_3556#1 length = 575 sequences # 1

consensusID : consensus_3556#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 795
fasta sequence

                              [GAAAAAAAGAGTGAGAAGAAAGTCGAGATCATGTCCCTTTGGAAGGTGCTCCTGATGGTAATCGCGCTCATCTGCGCCCTGCATACTACTTCAGGGAGACCTCCCGTCGTGGGATATCCTGCTCCTCGTCCCAACAGGAGCTCGGGCACATGCTACGAAGGCTGCAACCCTCCAGGTAGAGATGACCCTTTGCTACTCTCCAGGTAGAGATGGCAACAGAGATCCATAACCAGAGACTCTATAGGTTTTTATTTTATTAGGAGTCATACATGATCTAATTCTTGTATCTATGGATTTATCAACGGAAAAAAAAATCCTTACATGTTGGATAGATGGGTATCAGTTCTTTAGCCACTCGTACCCCTTACCTATGGGTAAAAAATACCTATATGCTTAGCGTGATAGTTTACTTACTTTGAACGTTAATGTATGGTTTAATACTAGTATGGTTTATTTACTTGTTATATATGGTTTAATTCTTGCATGATTTGTTTACTTGTATTTGAATGCTAATACTAAAATCAAGGTTACTTAATATGATGTCGATAGTTGTTATCGTAATCGTTTAGTTATAGATAAAGGGGAAGGGAGAAGTTCACTTTAGTTCCCTCAATTTATCGTCGAGTCTGAAATTTATCCTTGAAATGCAAAACCGGGTACAACACATCCCCTAGCTTACAAAATCAATACAAATAGGGGGTCTCTCGGCAATATTGTGCCCAGTTTTGGTTGACGTGGCGTCTACGTGGGATCCTTTAACTAGGTGTTCGTTCCACGTGGTATTGATGTGTCGTT]

[+] EMBL CB620422             [GAAAAAAAGAGTGAGAAGAAAGTCGAGATCATGTCCCTTTGGAAGGTGCTCCTGATGGTAATCGCGCTCATCTGCGCCCTGCATACTACTTCAGGGAGACCTCCCGTCGTGGGATATCCTGCTCCTCGTCCCAACAGGAGCTCGGGCACATGCTACGAAGGCTGCAACCCTCCAGGTAGAGATGACCCTTTGCTACTCTCCAGGTAGAGATGGCAACAGAGATCCATAACCAGAGACTCTATAGGTTTTTATTTTATTAGGAGTCATACATGATCTAATTCTTGTATCTATGGATTTATCAACGGAAAAAAAAATCCTTACATGTTGGATAGATGGGTATCAGTTCTTTAGCCACTCGTACCCCTTACCTATGGGTAAAAAATACCTATATGCTTAGCGTGATAGTTTACTTACTTTGAACGTTAATGTATGGTTTAATACTAGTATGGTTTATTTACTTGTTATATATGGTTTAATTCTTGCATGATTTGTTTACTTGTATTTGAATGCTAATACTAAAATCAAGGTTACTTAATATGATGTCGATAGTTGTTATCGTAATCGTTTAGTTATAGATAAAGGGGAAGGGAGAAGTTCACTTTAGTTCCCTCAATTTATCGTCGAGTCTGAAATTTATCCTTGAAATGCAAAACCGGGTACAACACATCCCCTAGCTTACAAAATCAATACAAATAGGGGGTCTCTCGGCAATATTGTGCCCAGTTTTGGTTGACGTGGCGTCTACGTGGGATCCTTTAACTAGGTGTTCGTTCCACGTGGTATTGATGTGTCGTT]




>consensus_3556#0
GAAAAAAAGAGTGAGAAGAAAGTCGAGATCATGTCCCTTTGGAAGGTGCTCCTGATGGTA
ATCGCGCTCATCTGCGCCCTGCATACTACTTCAGGGAGACCTCCCGTCGTGGGATATCCT
GCTCCTCGTCCCAACAGGAGCTCGGGCACATGCTACGAAGGCTGCAACCCTCCAGGTAGA
GATGACCCTTTGCTACTCTCCAGGTAGAGATGGCAACAGAGATCCATAACCAGAGACTCT
ATAGGTTTTTATTTTATTAGGAGTCATACATGATCTAATTCTTGTATCTATGGATTTATC
AACGGAAAAAAAAATCCTTACATGTTGGATAGATGGGTATCAGTTCTTTAGCCACTCGTA
CCCCTTACCTATGGGTAAAAAATACCTATATGCTTAGCGTGATAGTTTACTTACTTTGAA
CGTTAATGTATGGTTTAATACTAGTATGGTTTATTTACTTGTTATATATGGTTTAATTCT
TGCATGATTTGTTTACTTGTATTTGAATGCTAATACTAAAATCAAGGTTACTTAATATGA
TGTCGATAGTTGTTATCGTAATCGTTTAGTTATAGATAAAGGGGAAGGGAGAAGTTCACT
TTAGTTCCCTCAATTTATCGTCGAGTCTGAAATTTATCCTTGAAATGCAAAACCGGGTAC
AACACATCCCCTAGCTTACAAAATCAATACAAATAGGGGGTCTCTCGGCAATATTGTGCC
CAGTTTTGGTTGACGTGGCGTCTACGTGGGATCCTTTAACTAGGTGTTCGTTCCACGTGG
TATTGATGTGTCGTT

consensusID : consensus_3556#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence

                              [AGGTGCAGTTTCAGTGAGGGAGGAAAAAAAGAGTGAGAAGAAAGTCGAGATCATGTCCCTTTGGAAGGTGCTCCTGATGGTAATCGCGCTCATCTGCGCCCTGCATACTACTTCAGGGAGACCTCCCGTCGTGGGATATCCTGCTCCTCGTCCCAACGGTAGCTCGGGCACACGATGCTACGAAGGCTGCAACCCTCCAGGTAGAGATGGCAACAGGGATCCATAACAGAGACCCTCTGCTACCCTCCAGGTAGAGATGGCAACAGAGATCCATAACCAGAGACTCTATAGGTTTTTATTTTATTAGGAGTCATATATGATCTAATTCTTGTATCTATGGATTTATCAACAGAAAAAAAATCCTTACATGTTGGATAGATGGGTATTAGTTCTTTAGCCACTCGTACCCCTTACCTATGGGTAAAAAATACCTATATGCTTAGCGTGATAGTTTACTTACTTTGAACGTTCATGTATGGTTTAATACTAGTATGGTTTATTTACTTGTTATATATGGTTTAATTCTTGCATGATTTGTTTACTTGTATTTGAATGCTAATACTAAAACCAAGGTT]

[+] EMBL AK063103             [AGGTGCAGTTTCAGTGAGGGAGGAAAAAAAGAGTGAGAAGAAAGTCGAGATCATGTCCCTTTGGAAGGTGCTCCTGATGGTAATCGCGCTCATCTGCGCCCTGCATACTACTTCAGGGAGACCTCCCGTCGTGGGATATCCTGCTCCTCGTCCCAACGGTAGCTCGGGCACACGATGCTACGAAGGCTGCAACCCTCCAGGTAGAGATGGCAACAGGGATCCATAACAGAGACCCTCTGCTACCCTCCAGGTAGAGATGGCAACAGAGATCCATAACCAGAGACTCTATAGGTTTTTATTTTATTAGGAGTCATATATGATCTAATTCTTGTATCTATGGATTTATCAACAGAAAAAAAATCCTTACATGTTGGATAGATGGGTATTAGTTCTTTAGCCACTCGTACCCCTTACCTATGGGTAAAAAATACCTATATGCTTAGCGTGATAGTTTACTTACTTTGAACGTTCATGTATGGTTTAATACTAGTATGGTTTATTTACTTGTTATATATGGTTTAATTCTTGCATGATTTGTTTACTTGTATTTGAATGCTAATACTAAAACCAAGGTT]




>consensus_3556#1
AGGTGCAGTTTCAGTGAGGGAGGAAAAAAAGAGTGAGAAGAAAGTCGAGATCATGTCCCT
TTGGAAGGTGCTCCTGATGGTAATCGCGCTCATCTGCGCCCTGCATACTACTTCAGGGAG
ACCTCCCGTCGTGGGATATCCTGCTCCTCGTCCCAACGGTAGCTCGGGCACACGATGCTA
CGAAGGCTGCAACCCTCCAGGTAGAGATGGCAACAGGGATCCATAACAGAGACCCTCTGC
TACCCTCCAGGTAGAGATGGCAACAGAGATCCATAACCAGAGACTCTATAGGTTTTTATT
TTATTAGGAGTCATATATGATCTAATTCTTGTATCTATGGATTTATCAACAGAAAAAAAA
TCCTTACATGTTGGATAGATGGGTATTAGTTCTTTAGCCACTCGTACCCCTTACCTATGG
GTAAAAAATACCTATATGCTTAGCGTGATAGTTTACTTACTTTGAACGTTCATGTATGGT
TTAATACTAGTATGGTTTATTTACTTGTTATATATGGTTTAATTCTTGCATGATTTGTTT
ACTTGTATTTGAATGCTAATACTAAAACCAAGGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3556#0      ----------------------GAAAAAAAGAGTGAGAAGAAAGTCGAGATCATGTCCCT 38
consensus_3556#1      AGGTGCAGTTTCAGTGAGGGAGGAAAAAAAGAGTGAGAAGAAAGTCGAGATCATGTCCCT 60
                                            **************************************

consensus_3556#0      TTGGAAGGTGCTCCTGATGGTAATCGCGCTCATCTGCGCCCTGCATACTACTTCAGGGAG 98
consensus_3556#1      TTGGAAGGTGCTCCTGATGGTAATCGCGCTCATCTGCGCCCTGCATACTACTTCAGGGAG 120
                      ************************************************************

consensus_3556#0      ACCTCCCGTCGTGGGATATCCTGCTCCTCGTCCCAACAGGAGCTCGGGCACA---TGCTA 155
consensus_3556#1      ACCTCCCGTCGTGGGATATCCTGCTCCTCGTCCCAACGGTAGCTCGGGCACACGATGCTA 180
                      ************************************* * ************   *****

consensus_3556#0      CGAAGGCTGCAACCCTCCAGGTAGAGATG----------------------ACCCTTTGC 193
consensus_3556#1      CGAAGGCTGCAACCCTCCAGGTAGAGATGGCAACAGGGATCCATAACAGAGACCCTCTGC 240
                      *****************************                      ***** ***

consensus_3556#0      TACTCTCCAGGTAGAGATGGCAACAGAGATCCATAACCAGAGACTCTATAGGTTTTTATT 253
consensus_3556#1      TACCCTCCAGGTAGAGATGGCAACAGAGATCCATAACCAGAGACTCTATAGGTTTTTATT 300
                      *** ********************************************************

consensus_3556#0      TTATTAGGAGTCATACATGATCTAATTCTTGTATCTATGGATTTATCAACGGAAAAAAAA 313
consensus_3556#1      TTATTAGGAGTCATATATGATCTAATTCTTGTATCTATGGATTTATCAACAGAAAAAAAA 360
                      *************** ********************************** *********

consensus_3556#0      ATCCTTACATGTTGGATAGATGGGTATCAGTTCTTTAGCCACTCGTACCCCTTACCTATG 373
consensus_3556#1      -TCCTTACATGTTGGATAGATGGGTATTAGTTCTTTAGCCACTCGTACCCCTTACCTATG 419
                       ************************** ********************************

consensus_3556#0      GGTAAAAAATACCTATATGCTTAGCGTGATAGTTTACTTACTTTGAACGTTAATGTATGG 433
consensus_3556#1      GGTAAAAAATACCTATATGCTTAGCGTGATAGTTTACTTACTTTGAACGTTCATGTATGG 479
                      *************************************************** ********

consensus_3556#0      TTTAATACTAGTATGGTTTATTTACTTGTTATATATGGTTTAATTCTTGCATGATTTGTT 493
consensus_3556#1      TTTAATACTAGTATGGTTTATTTACTTGTTATATATGGTTTAATTCTTGCATGATTTGTT 539
                      ************************************************************

consensus_3556#0      TACTTGTATTTGAATGCTAATACTAAAATCAAGGTTACTTAATATGATGTCGATAGTTGT 553
consensus_3556#1      TACTTGTATTTGAATGCTAATACTAAAACCAAGGTT------------------------ 575
                      **************************** *******                        

consensus_3556#0      TATCGTAATCGTTTAGTTATAGATAAAGGGGAAGGGAGAAGTTCACTTTAGTTCCCTCAA 613
consensus_3556#1      ------------------------------------------------------------
                                                                                  

consensus_3556#0      TTTATCGTCGAGTCTGAAATTTATCCTTGAAATGCAAAACCGGGTACAACACATCCCCTA 673
consensus_3556#1      ------------------------------------------------------------
                                                                                  

consensus_3556#0      GCTTACAAAATCAATACAAATAGGGGGTCTCTCGGCAATATTGTGCCCAGTTTTGGTTGA 733
consensus_3556#1      ------------------------------------------------------------
                                                                                  

consensus_3556#0      CGTGGCGTCTACGTGGGATCCTTTAACTAGGTGTTCGTTCCACGTGGTATTGATGTGTCG 793
consensus_3556#1      ------------------------------------------------------------
                                                                                  

consensus_3556#0      TT 795
consensus_3556#1      --