cluster # 3576

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Oryza sativa
cluster # 3576 cluster # 3576 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3576#0 length = 395 sequences # 1

consensus_3576#1 length = 352 sequences # 1

consensusID : consensus_3576#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence

                              [GAGGGAGCATGATGATATAGTCGCTGGTATCTCACCCAGTAAGAGAATTCAAGCTGAGATTGAGATATCTAAGGCGGGTTAACTGCCCCAACTTCAGGAGAAATTTGACCCATTTAGTTGGTTACCGGGCATGTGAATTNCTTGAGACGAAACTAAGGCCCAGCTACCACAAGGAAAATATTTGGCCCTGTGATGTTTCTGTGACTCAAAGATTCTAANTGCCCACCAACCCCGAAGATGGGGTTGCTGGTTGCTACCAAAGTAACTCCCTTTTCCCAAATTTGCCATTACTGCCAAAGAAGATTCCATTTTCCCCCATGAGGCTAAGTGCTTTCAAGAGGGGTCATGNAGCTGGGACTTGAGGCAGAGNAGGGCCTTGCGATCAGCACTGGAAT]

[+] EMBL AU174908             [GAGGGAGCATGATGATATAGTCGCTGGTATCTCACCCAGTAAGAGAATTCAAGCTGAGATTGAGATATCTAAGGCGGGTTAACTGCCCCAACTTCAGGAGAAATTTGACCCATTTAGTTGGTTACCGGGCATGTGAATTNCTTGAGACGAAACTAAGGCCCAGCTACCACAAGGAAAATATTTGGCCCTGTGATGTTTCTGTGACTCAAAGATTCTAANTGCCCACCAACCCCGAAGATGGGGTTGCTGGTTGCTACCAAAGTAACTCCCTTTTCCCAAATTTGCCATTACTGCCAAAGAAGATTCCATTTTCCCCCATGAGGCTAAGTGCTTTCAAGAGGGGTCATGNAGCTGGGACTTGAGGCAGAGNAGGGCCTTGCGATCAGCACTGGAAT]




>consensus_3576#0
GAGGGAGCATGATGATATAGTCGCTGGTATCTCACCCAGTAAGAGAATTCAAGCTGAGAT
TGAGATATCTAAGGCGGGTTAACTGCCCCAACTTCAGGAGAAATTTGACCCATTTAGTTG
GTTACCGGGCATGTGAATTNCTTGAGACGAAACTAAGGCCCAGCTACCACAAGGAAAATA
TTTGGCCCTGTGATGTTTCTGTGACTCAAAGATTCTAANTGCCCACCAACCCCGAAGATG
GGGTTGCTGGTTGCTACCAAAGTAACTCCCTTTTCCCAAATTTGCCATTACTGCCAAAGA
AGATTCCATTTTCCCCCATGAGGCTAAGTGCTTTCAAGAGGGGTCATGNAGCTGGGACTT
GAGGCAGAGNAGGGCCTTGCGATCAGCACTGGAAT

consensusID : consensus_3576#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 352
fasta sequence

                              [TATAGTCGCTGGTATCTCACCAGTAAGAGAATTCAAGCTGAGATTGAGATATCTAAGGCGGGTTAACTGCCCAACTTCAGGAGAAATTTGACCATTTAGTTGGTTACCGGGCATGTGAATTCTTGAGACGAAACTAAGGCCAGCTACACAAGGAAATATTTGGCCTGTGATGTTCTGTGACTCAAGATCTAATGCCACAACCCGAGATGGGTTGCTGTTGCTACAAGTAACTCCTTTCCAATTGCATACTGCAAGAGATTCATTTCCCCATGAGGCTAGTGCTTCAGAGGGGTCATGGAGCTGGGACTTGAGGCAGAGGAGGGCCTTGCGATCAGCACTGGAATCGTTGTGG]

[+] EMBL AU174907             [TATAGTCGCTGGTATCTCACCAGTAAGAGAATTCAAGCTGAGATTGAGATATCTAAGGCGGGTTAACTGCCCAACTTCAGGAGAAATTTGACCATTTAGTTGGTTACCGGGCATGTGAATTCTTGAGACGAAACTAAGGCCAGCTACACAAGGAAATATTTGGCCTGTGATGTTCTGTGACTCAAGATCTAATGCCACAACCCGAGATGGGTTGCTGTTGCTACAAGTAACTCCTTTCCAATTGCATACTGCAAGAGATTCATTTCCCCATGAGGCTAGTGCTTCAGAGGGGTCATGGAGCTGGGACTTGAGGCAGAGGAGGGCCTTGCGATCAGCACTGGAATCGTTGTGG]




>consensus_3576#1
TATAGTCGCTGGTATCTCACCAGTAAGAGAATTCAAGCTGAGATTGAGATATCTAAGGCG
GGTTAACTGCCCAACTTCAGGAGAAATTTGACCATTTAGTTGGTTACCGGGCATGTGAAT
TCTTGAGACGAAACTAAGGCCAGCTACACAAGGAAATATTTGGCCTGTGATGTTCTGTGA
CTCAAGATCTAATGCCACAACCCGAGATGGGTTGCTGTTGCTACAAGTAACTCCTTTCCA
ATTGCATACTGCAAGAGATTCATTTCCCCATGAGGCTAGTGCTTCAGAGGGGTCATGGAG
CTGGGACTTGAGGCAGAGGAGGGCCTTGCGATCAGCACTGGAATCGTTGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3576#0      GAGGGAGCATGATGATATAGTCGCTGGTATCTCACCCAGTAAGAGAATTCAAGCTGAGAT 60
consensus_3576#1      ---------------TATAGTCGCTGGTATCTCACC-AGTAAGAGAATTCAAGCTGAGAT 44
                                     ********************* ***********************

consensus_3576#0      TGAGATATCTAAGGCGGGTTAACTGCCCCAACTTCAGGAGAAATTTGACCCATTTAGTTG 120
consensus_3576#1      TGAGATATCTAAGGCGGGTTAACTGCCC-AACTTCAGGAGAAATTTGACC-ATTTAGTTG 102
                      **************************** ********************* *********

consensus_3576#0      GTTACCGGGCATGTGAATTNCTTGAGACGAAACTAAGGCCCAGCTACCACAAGGAAAATA 180
consensus_3576#1      GTTACCGGGCATGTGAATTC-TTGAGACGAAACTAAGGCC-AGCTAC-ACAAGGAAA-TA 158
                      *******************  ******************* ****** ********* **

consensus_3576#0      TTTGGCCCTGTGATGTTTCTGTGACTCAAAGATTCTAANTGCCCACCAACCCCGAAGATG 240
consensus_3576#1      TTTGGCC-TGTGATGTT-CTGTGACTCAAGATCT---AATGCCA--CAACCC--GAGATG 209
                      ******* ********* ***********    *   * ****   ******   *****

consensus_3576#0      GGGTTGCTGGTTGCTACCAAAGTAACTCCCTTTTCCCAAATTTGCCATTACTGCCAAAGA 300
consensus_3576#1      GG-TTGCTG-TTGCTAC--AAGTAACTCCTTT---CCAA--TTGCA--TACTGCAAGAGA 258
                      ** ****** *******  ********** **   ****  ****   ****** * ***

consensus_3576#0      AGATTCCATTTTCCCCCATGAGGCTAAGTGCTTTCAAGAGGGGTCATGNAGCTGGGACTT 360
consensus_3576#1      ----TTCATTT--CCCCATGAGGCTA-GTGCTTC--AGAGGGGTCATGGAGCTGGGACTT 309
                          * *****  ************* ******   ************ ***********

consensus_3576#0      GAGGCAGAGNAGGGCCTTGCGATCAGCACTGGAAT-------- 395
consensus_3576#1      GAGGCAGAGGAGGGCCTTGCGATCAGCACTGGAATCGTTGTGG 352
                      ********* *************************