cluster # 3595

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Oryza sativa
cluster # 3595 cluster # 3595 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3595#0 length = 730 sequences # 1

consensus_3595#1 length = 494 sequences # 1

consensusID : consensus_3595#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 730
fasta sequence

                              [CCGCCCCCTTCTCGGGCCGCCGTCGCGTCGCCGTAGGATGGGGAGGCGCACCTGGGCGGCGTCTTCCTGGCAATAGCAGCGGCGACATCTTCCTGGAGACAGTAGAGGCGGCGTCTTCCTGGCGACGGCATCAACTGCATCTTCCCTGCGGCTACGGCGTCTTCCCGGCGATGGCAACGGCAGCGGCAGCGACGTCATCTCTCCTGTTGCAGGTTCTTCCTTCCCTCCCTCCATGGACCACCTCCTTTCTCCTCCTTTAATGCAAGACGATGCAAATGTGGGCAGAGATGCTGAGATGGAGGAAAGAGATTGGAGCCTACGCGATCTTGGAGGAGTCCTATGTTCTTGTGGTCAGGAGTTCCGAACAGGAATACTATGGTGTTGATCGGGAAGGCCAGCCGGTTTACATCAAGAGGCTTGGCAAGATCAATCCAAACAAGCTGATGCAGATCACAACAGTGATTGTTTGCTACCTACAGTTCAGTTGACATGCTTTCTTACAGCTAATGCTCAGACTGCAACCATTACCAGTTCAGCTAGCCTGCTTCTTGCTTCTTTCGATAAGATTACACATCTACATGGATTAAGTGATTGCAACCTGTCTTTGCTGCTATGCTGGGGTCATGGCAGTGAACTCATGACCTATTTACAGAAGAAGGATCAGAGTGGTCTTTTACAAAGACGAGCTATTTTATCATATATATGGTAACAACAAAGTATAATGGTCTAA]

[+] EMBL CB624147             [CCGCCCCCTTCTCGGGCCGCCGTCGCGTCGCCGTAGGATGGGGAGGCGCACCTGGGCGGCGTCTTCCTGGCAATAGCAGCGGCGACATCTTCCTGGAGACAGTAGAGGCGGCGTCTTCCTGGCGACGGCATCAACTGCATCTTCCCTGCGGCTACGGCGTCTTCCCGGCGATGGCAACGGCAGCGGCAGCGACGTCATCTCTCCTGTTGCAGGTTCTTCCTTCCCTCCCTCCATGGACCACCTCCTTTCTCCTCCTTTAATGCAAGACGATGCAAATGTGGGCAGAGATGCTGAGATGGAGGAAAGAGATTGGAGCCTACGCGATCTTGGAGGAGTCCTATGTTCTTGTGGTCAGGAGTTCCGAACAGGAATACTATGGTGTTGATCGGGAAGGCCAGCCGGTTTACATCAAGAGGCTTGGCAAGATCAATCCAAACAAGCTGATGCAGATCACAACAGTGATTGTTTGCTACCTACAGTTCAGTTGACATGCTTTCTTACAGCTAATGCTCAGACTGCAACCATTACCAGTTCAGCTAGCCTGCTTCTTGCTTCTTTCGATAAGATTACACATCTACATGGATTAAGTGATTGCAACCTGTCTTTGCTGCTATGCTGGGGTCATGGCAGTGAACTCATGACCTATTTACAGAAGAAGGATCAGAGTGGTCTTTTACAAAGACGAGCTATTTTATCATATATATGGTAACAACAAAGTATAATGGTCTAA]




>consensus_3595#0
CCGCCCCCTTCTCGGGCCGCCGTCGCGTCGCCGTAGGATGGGGAGGCGCACCTGGGCGGC
GTCTTCCTGGCAATAGCAGCGGCGACATCTTCCTGGAGACAGTAGAGGCGGCGTCTTCCT
GGCGACGGCATCAACTGCATCTTCCCTGCGGCTACGGCGTCTTCCCGGCGATGGCAACGG
CAGCGGCAGCGACGTCATCTCTCCTGTTGCAGGTTCTTCCTTCCCTCCCTCCATGGACCA
CCTCCTTTCTCCTCCTTTAATGCAAGACGATGCAAATGTGGGCAGAGATGCTGAGATGGA
GGAAAGAGATTGGAGCCTACGCGATCTTGGAGGAGTCCTATGTTCTTGTGGTCAGGAGTT
CCGAACAGGAATACTATGGTGTTGATCGGGAAGGCCAGCCGGTTTACATCAAGAGGCTTG
GCAAGATCAATCCAAACAAGCTGATGCAGATCACAACAGTGATTGTTTGCTACCTACAGT
TCAGTTGACATGCTTTCTTACAGCTAATGCTCAGACTGCAACCATTACCAGTTCAGCTAG
CCTGCTTCTTGCTTCTTTCGATAAGATTACACATCTACATGGATTAAGTGATTGCAACCT
GTCTTTGCTGCTATGCTGGGGTCATGGCAGTGAACTCATGACCTATTTACAGAAGAAGGA
TCAGAGTGGTCTTTTACAAAGACGAGCTATTTTATCATATATATGGTAACAACAAAGTAT
AATGGTCTAA

consensusID : consensus_3595#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence

                              [TGGGCGGCGTCTTCCTGGCAATAGCAGCGGCGACATCTTCCTGGAGACAGTAGAGGCGGCGTCTTCCTGGCGACGGCATCAACTGCATCTTCCCTGCGGCTACGGCGTCTTCCCGGCGATGGCAACGGCAGCGGCAGCGACGTCATCTCTCCTGTTGCAGGTTCTTCCTTCCCTCACTCCATGGACCACCTCCTTTCTCCTCCTTTAATGCAAGACGATGCAAATGTGGGCAGAGATGCTGAGATGGAGGAAAGAGATTGGAGCCTACGCGATCTTGGAGGAGTCCTATGTTCTTGTGGTCAGGAGTTCCGAACAGGAATACTATGGTGTTGATCGGGAAGGCCAGCCGGTTTACATCAAGNNNCTTGGCAAGATCAATCCAAACAAGCTGATGCAGATCACAACAGTGATTGTTTGCTACCTACAGTTCAGTTGACATGCTTTCTTACAGCTAATGCTCNNNCNNNNNNCATTACCNNNNNNNCNCCTGTCTT]

[+] EMBL CF195961             [TGGGCGGCGTCTTCCTGGCAATAGCAGCGGCGACATCTTCCTGGAGACAGTAGAGGCGGCGTCTTCCTGGCGACGGCATCAACTGCATCTTCCCTGCGGCTACGGCGTCTTCCCGGCGATGGCAACGGCAGCGGCAGCGACGTCATCTCTCCTGTTGCAGGTTCTTCCTTCCCTCACTCCATGGACCACCTCCTTTCTCCTCCTTTAATGCAAGACGATGCAAATGTGGGCAGAGATGCTGAGATGGAGGAAAGAGATTGGAGCCTACGCGATCTTGGAGGAGTCCTATGTTCTTGTGGTCAGGAGTTCCGAACAGGAATACTATGGTGTTGATCGGGAAGGCCAGCCGGTTTACATCAAGNNNCTTGGCAAGATCAATCCAAACAAGCTGATGCAGATCACAACAGTGATTGTTTGCTACCTACAGTTCAGTTGACATGCTTTCTTACAGCTAATGCTCNNNCNNNNNNCATTACCNNNNNNNCNCCTGTCTT]




>consensus_3595#1
TGGGCGGCGTCTTCCTGGCAATAGCAGCGGCGACATCTTCCTGGAGACAGTAGAGGCGGC
GTCTTCCTGGCGACGGCATCAACTGCATCTTCCCTGCGGCTACGGCGTCTTCCCGGCGAT
GGCAACGGCAGCGGCAGCGACGTCATCTCTCCTGTTGCAGGTTCTTCCTTCCCTCACTCC
ATGGACCACCTCCTTTCTCCTCCTTTAATGCAAGACGATGCAAATGTGGGCAGAGATGCT
GAGATGGAGGAAAGAGATTGGAGCCTACGCGATCTTGGAGGAGTCCTATGTTCTTGTGGT
CAGGAGTTCCGAACAGGAATACTATGGTGTTGATCGGGAAGGCCAGCCGGTTTACATCAA
GNNNCTTGGCAAGATCAATCCAAACAAGCTGATGCAGATCACAACAGTGATTGTTTGCTA
CCTACAGTTCAGTTGACATGCTTTCTTACAGCTAATGCTCNNNCNNNNNNCATTACCNNN
NNNNCNCCTGTCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3595#0      CCGCCCCCTTCTCGGGCCGCCGTCGCGTCGCCGTAGGATGGGGAGGCGCACCTGGGCGGC 60
consensus_3595#1      ----------------------------------------------------TGGGCGGC 8
                                                                          ********

consensus_3595#0      GTCTTCCTGGCAATAGCAGCGGCGACATCTTCCTGGAGACAGTAGAGGCGGCGTCTTCCT 120
consensus_3595#1      GTCTTCCTGGCAATAGCAGCGGCGACATCTTCCTGGAGACAGTAGAGGCGGCGTCTTCCT 68
                      ************************************************************

consensus_3595#0      GGCGACGGCATCAACTGCATCTTCCCTGCGGCTACGGCGTCTTCCCGGCGATGGCAACGG 180
consensus_3595#1      GGCGACGGCATCAACTGCATCTTCCCTGCGGCTACGGCGTCTTCCCGGCGATGGCAACGG 128
                      ************************************************************

consensus_3595#0      CAGCGGCAGCGACGTCATCTCTCCTGTTGCAGGTTCTTCCTTCCCTCCCTCCATGGACCA 240
consensus_3595#1      CAGCGGCAGCGACGTCATCTCTCCTGTTGCAGGTTCTTCCTTCCCTCACTCCATGGACCA 188
                      *********************************************** ************

consensus_3595#0      CCTCCTTTCTCCTCCTTTAATGCAAGACGATGCAAATGTGGGCAGAGATGCTGAGATGGA 300
consensus_3595#1      CCTCCTTTCTCCTCCTTTAATGCAAGACGATGCAAATGTGGGCAGAGATGCTGAGATGGA 248
                      ************************************************************

consensus_3595#0      GGAAAGAGATTGGAGCCTACGCGATCTTGGAGGAGTCCTATGTTCTTGTGGTCAGGAGTT 360
consensus_3595#1      GGAAAGAGATTGGAGCCTACGCGATCTTGGAGGAGTCCTATGTTCTTGTGGTCAGGAGTT 308
                      ************************************************************

consensus_3595#0      CCGAACAGGAATACTATGGTGTTGATCGGGAAGGCCAGCCGGTTTACATCAAGAGGCTTG 420
consensus_3595#1      CCGAACAGGAATACTATGGTGTTGATCGGGAAGGCCAGCCGGTTTACATCAAGNNNCTTG 368
                      *****************************************************   ****

consensus_3595#0      GCAAGATCAATCCAAACAAGCTGATGCAGATCACAACAGTGATTGTTTGCTACCTACAGT 480
consensus_3595#1      GCAAGATCAATCCAAACAAGCTGATGCAGATCACAACAGTGATTGTTTGCTACCTACAGT 428
                      ************************************************************

consensus_3595#0      TCAGTTGACATGCTTTCTTACAGCTAATGCTCAGACTGCAACCATTACCAGTTCAGCTAG 540
consensus_3595#1      TCAGTTGACATGCTTTCTTACAGCTAATGCTCNNNCNNNNNNCATTACCNNNNNNNCN-- 486
                      ********************************   *      *******       *   

consensus_3595#0      CCTGCTTCTTGCTTCTTTCGATAAGATTACACATCTACATGGATTAAGTGATTGCAACCT 600
consensus_3595#1      CCTGTCTT---------------------------------------------------- 494
                      ****  *                                                     

consensus_3595#0      GTCTTTGCTGCTATGCTGGGGTCATGGCAGTGAACTCATGACCTATTTACAGAAGAAGGA 660
consensus_3595#1      ------------------------------------------------------------
                                                                                  

consensus_3595#0      TCAGAGTGGTCTTTTACAAAGACGAGCTATTTTATCATATATATGGTAACAACAAAGTAT 720
consensus_3595#1      ------------------------------------------------------------
                                                                                  

consensus_3595#0      AATGGTCTAA 730
consensus_3595#1      ----------