cluster # 3596

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Oryza sativa
cluster # 3596 cluster # 3596 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3596#0 length = 1792 sequences # 1

consensus_3596#1 length = 333 sequences # 1

consensusID : consensus_3596#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1792
fasta sequence

                              [CCGTCCTCTCCTCGCCCACCGCCGCCGCCGCCGCCGCCCATCCTCCTTCCTCTCCTCGGGCGCTGAACCGCCGAGCTGAGCAGCCGCCCCGCCGCCCCCTCCTCCGCCGCCACAAGCCCGATCGAGGGGTGTCTCGCCCGGGATATATATATATGGCGGCGGGGCCGGCGGGGATCGTGTGGCAGACGCCGGCGAACCCGCCGGAGCGGCAGGACTACATCTTCCGCGACGGTAGTAGCAACCCGCAGCCCGGCCTCCGTCTCGTCCCCAACGCGCGCATCTTTCTTTCTGCCCGCCAAACCCCCTCCCCGGAGGCCCCGGACTGACGCGGTTGGTTATTCCCCCCCCATTTTGCTTCGCAGGGCGGCGCTACGTGAGGCCCTACTACTTCGAGTTCATCTCCCATGTGAAAAACAGATGGGCTGGGAAGACCATTGTTGACCTCTTCACCGATGAGTTCAAGGGCCGGCCTCGTGAATATTATGTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTGGATGACCAAATGGTTCACGCAGACTATGTTGTGCAATCATCACAAAAGATAAGCCATTTCTTGCACAGGCATGAACCTCCAGTTTTGGGTGGTGATATTACAATCCTTCAAAATGAAGCTGATGTTGTTACAGTTTGCAAACCTGCATCTGTTCCAGTTCATCCGTGTGGTCAATACCGCAAGAATACTGTTGTCGGTATTCTGCAAGCTGAACATGGATTGGTGCCCCTATTTCTATTTTGACAGCCGTGCATCGGCTAGATCGGTTAGTTTCAGGTCTCCTTATATTTGCTAAAAATGCTGACAAAGCTGAAAGTTTCAGGCAACAGATCGAAGCTAGTTTGCTGCAGAAAGAATATGTGGCCAAGGTTGTTGGGGTGTTTCCTGATGGTGAGCAAACTGTTAATGCAAATGTGCACTTCAACGCACGGGAAGGAAGGAGCACTGCAGAGGTTTGTGATGGTGATGGTAAAGCTCCAATTGGAAAACAAGCCTGCACCAAGTTTCAGAGGATCTGTACTGATGGAATCCACAGCATTGTCCTGTGCAAACCTGTGACTGGCCGGACTCATCAGGTCACACTACCTTATACACATCAACATTGATTTGCTCGTTCAAACTTCAAACAATCGAAACGACCTGGAAATTTCCCAAAAAAATGAATCTAAAAGCCTACTACATAGAAAAAGTTCAAGTGGCCTTTAAACTTACTGCACTATCTGAATCATAATGGAAATCTTAATCCTGCTAGAGCTTGGCAAAATGCATTTTAGGTGCACACAGGTGACACGCAAACTGTTGAGTGCCTCTTTATTTAGTCATAGCTCCCTTGTCCCTGTTTTGATAACATGCTTCATGCCCAATCCGTTACTTCCAAAATAATCAAATTATCAGACATCTGTTCACCATAGCATGTCTCTGATGCAAGATGAGATAGATGTGGTCATAATTTTTCTGCTGATTCTTTGTGCCAATAGTATGCCCTCTTGTCCTATGGTTTTGTTTTTTCAGTTACTTATCTATATTTCTGATACAGCTTTTTGTTTGACAAATGTAGATAAGGGTACATCTAAAACACATTGGTTACCCAATAGCCAATGACGAGGTGTACCTTTCCGAGAATTTTTCTCCACGTTCGTCAAAGGGAACAAGAATCAACAGAGCAACCACGCTAGCTTGTTCATTGCCATCTTCAGATCCTGACAGTTGTGCTGACCTTGGGAACAATGATACAAACGAAGATACAGAAGCCGATGAGGAGTTCAGCATCGATCC]

[+] EMBL AK073819             [CCGTCCTCTCCTCGCCCACCGCCGCCGCCGCCGCCGCCCATCCTCCTTCCTCTCCTCGGGCGCTGAACCGCCGAGCTGAGCAGCCGCCCCGCCGCCCCCTCCTCCGCCGCCACAAGCCCGATCGAGGGGTGTCTCGCCCGGGATATATATATATGGCGGCGGGGCCGGCGGGGATCGTGTGGCAGACGCCGGCGAACCCGCCGGAGCGGCAGGACTACATCTTCCGCGACGGTAGTAGCAACCCGCAGCCCGGCCTCCGTCTCGTCCCCAACGCGCGCATCTTTCTTTCTGCCCGCCAAACCCCCTCCCCGGAGGCCCCGGACTGACGCGGTTGGTTATTCCCCCCCCATTTTGCTTCGCAGGGCGGCGCTACGTGAGGCCCTACTACTTCGAGTTCATCTCCCATGTGAAAAACAGATGGGCTGGGAAGACCATTGTTGACCTCTTCACCGATGAGTTCAAGGGCCGGCCTCGTGAATATTATGTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTGGATGACCAAATGGTTCACGCAGACTATGTTGTGCAATCATCACAAAAGATAAGCCATTTCTTGCACAGGCATGAACCTCCAGTTTTGGGTGGTGATATTACAATCCTTCAAAATGAAGCTGATGTTGTTACAGTTTGCAAACCTGCATCTGTTCCAGTTCATCCGTGTGGTCAATACCGCAAGAATACTGTTGTCGGTATTCTGCAAGCTGAACATGGATTGGTGCCCCTATTTCTATTTTGACAGCCGTGCATCGGCTAGATCGGTTAGTTTCAGGTCTCCTTATATTTGCTAAAAATGCTGACAAAGCTGAAAGTTTCAGGCAACAGATCGAAGCTAGTTTGCTGCAGAAAGAATATGTGGCCAAGGTTGTTGGGGTGTTTCCTGATGGTGAGCAAACTGTTAATGCAAATGTGCACTTCAACGCACGGGAAGGAAGGAGCACTGCAGAGGTTTGTGATGGTGATGGTAAAGCTCCAATTGGAAAACAAGCCTGCACCAAGTTTCAGAGGATCTGTACTGATGGAATCCACAGCATTGTCCTGTGCAAACCTGTGACTGGCCGGACTCATCAGGTCACACTACCTTATACACATCAACATTGATTTGCTCGTTCAAACTTCAAACAATCGAAACGACCTGGAAATTTCCCAAAAAAATGAATCTAAAAGCCTACTACATAGAAAAAGTTCAAGTGGCCTTTAAACTTACTGCACTATCTGAATCATAATGGAAATCTTAATCCTGCTAGAGCTTGGCAAAATGCATTTTAGGTGCACACAGGTGACACGCAAACTGTTGAGTGCCTCTTTATTTAGTCATAGCTCCCTTGTCCCTGTTTTGATAACATGCTTCATGCCCAATCCGTTACTTCCAAAATAATCAAATTATCAGACATCTGTTCACCATAGCATGTCTCTGATGCAAGATGAGATAGATGTGGTCATAATTTTTCTGCTGATTCTTTGTGCCAATAGTATGCCCTCTTGTCCTATGGTTTTGTTTTTTCAGTTACTTATCTATATTTCTGATACAGCTTTTTGTTTGACAAATGTAGATAAGGGTACATCTAAAACACATTGGTTACCCAATAGCCAATGACGAGGTGTACCTTTCCGAGAATTTTTCTCCACGTTCGTCAAAGGGAACAAGAATCAACAGAGCAACCACGCTAGCTTGTTCATTGCCATCTTCAGATCCTGACAGTTGTGCTGACCTTGGGAACAATGATACAAACGAAGATACAGAAGCCGATGAGGAGTTCAGCATCGATCC]




>consensus_3596#0
CCGTCCTCTCCTCGCCCACCGCCGCCGCCGCCGCCGCCCATCCTCCTTCCTCTCCTCGGG
CGCTGAACCGCCGAGCTGAGCAGCCGCCCCGCCGCCCCCTCCTCCGCCGCCACAAGCCCG
ATCGAGGGGTGTCTCGCCCGGGATATATATATATGGCGGCGGGGCCGGCGGGGATCGTGT
GGCAGACGCCGGCGAACCCGCCGGAGCGGCAGGACTACATCTTCCGCGACGGTAGTAGCA
ACCCGCAGCCCGGCCTCCGTCTCGTCCCCAACGCGCGCATCTTTCTTTCTGCCCGCCAAA
CCCCCTCCCCGGAGGCCCCGGACTGACGCGGTTGGTTATTCCCCCCCCATTTTGCTTCGC
AGGGCGGCGCTACGTGAGGCCCTACTACTTCGAGTTCATCTCCCATGTGAAAAACAGATG
GGCTGGGAAGACCATTGTTGACCTCTTCACCGATGAGTTCAAGGGCCGGCCTCGTGAATA
TTATGTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTGGATGACCAAATGGTTCACGCAGA
CTATGTTGTGCAATCATCACAAAAGATAAGCCATTTCTTGCACAGGCATGAACCTCCAGT
TTTGGGTGGTGATATTACAATCCTTCAAAATGAAGCTGATGTTGTTACAGTTTGCAAACC
TGCATCTGTTCCAGTTCATCCGTGTGGTCAATACCGCAAGAATACTGTTGTCGGTATTCT
GCAAGCTGAACATGGATTGGTGCCCCTATTTCTATTTTGACAGCCGTGCATCGGCTAGAT
CGGTTAGTTTCAGGTCTCCTTATATTTGCTAAAAATGCTGACAAAGCTGAAAGTTTCAGG
CAACAGATCGAAGCTAGTTTGCTGCAGAAAGAATATGTGGCCAAGGTTGTTGGGGTGTTT
CCTGATGGTGAGCAAACTGTTAATGCAAATGTGCACTTCAACGCACGGGAAGGAAGGAGC
ACTGCAGAGGTTTGTGATGGTGATGGTAAAGCTCCAATTGGAAAACAAGCCTGCACCAAG
TTTCAGAGGATCTGTACTGATGGAATCCACAGCATTGTCCTGTGCAAACCTGTGACTGGC
CGGACTCATCAGGTCACACTACCTTATACACATCAACATTGATTTGCTCGTTCAAACTTC
AAACAATCGAAACGACCTGGAAATTTCCCAAAAAAATGAATCTAAAAGCCTACTACATAG
AAAAAGTTCAAGTGGCCTTTAAACTTACTGCACTATCTGAATCATAATGGAAATCTTAAT
CCTGCTAGAGCTTGGCAAAATGCATTTTAGGTGCACACAGGTGACACGCAAACTGTTGAG
TGCCTCTTTATTTAGTCATAGCTCCCTTGTCCCTGTTTTGATAACATGCTTCATGCCCAA
TCCGTTACTTCCAAAATAATCAAATTATCAGACATCTGTTCACCATAGCATGTCTCTGAT
GCAAGATGAGATAGATGTGGTCATAATTTTTCTGCTGATTCTTTGTGCCAATAGTATGCC
CTCTTGTCCTATGGTTTTGTTTTTTCAGTTACTTATCTATATTTCTGATACAGCTTTTTG
TTTGACAAATGTAGATAAGGGTACATCTAAAACACATTGGTTACCCAATAGCCAATGACG
AGGTGTACCTTTCCGAGAATTTTTCTCCACGTTCGTCAAAGGGAACAAGAATCAACAGAG
CAACCACGCTAGCTTGTTCATTGCCATCTTCAGATCCTGACAGTTGTGCTGACCTTGGGA
ACAATGATACAAACGAAGATACAGAAGCCGATGAGGAGTTCAGCATCGATCC

consensusID : consensus_3596#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 333
fasta sequence

                              [GGGCGCGNGGGATCGTGTGGCAGACGCGGCGAACCCGCAGNCNGCAGGACTACATCTTCCGCGACGGGCGCGCTACGTGAGGCCCTACTACTTCGAGTTCATCTCCCATGTGAAAAACAGATGGGCTGGGAAGACCATTGTTGACCTCTTCACCGATGAGTTCAAGGGCCGGCCTCGTGAATATTATGTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTGGATGACCAAATGGTTCACGCAGACTATGTTGTGCAATCATCACAAAAGATAAGCCATTTCTTGCACAGGCATGAACCTCCAGTTTTGGGTGGTGATATTACAATCCTTCAAAA]

[+] EMBL D42523               [GGGCGCGNGGGATCGTGTGGCAGACGCGGCGAACCCGCAGNCNGCAGGACTACATCTTCCGCGACGGGCGCGCTACGTGAGGCCCTACTACTTCGAGTTCATCTCCCATGTGAAAAACAGATGGGCTGGGAAGACCATTGTTGACCTCTTCACCGATGAGTTCAAGGGCCGGCCTCGTGAATATTATGTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTGGATGACCAAATGGTTCACGCAGACTATGTTGTGCAATCATCACAAAAGATAAGCCATTTCTTGCACAGGCATGAACCTCCAGTTTTGGGTGGTGATATTACAATCCTTCAAAA]




>consensus_3596#1
GGGCGCGNGGGATCGTGTGGCAGACGCGGCGAACCCGCAGNCNGCAGGACTACATCTTCC
GCGACGGGCGCGCTACGTGAGGCCCTACTACTTCGAGTTCATCTCCCATGTGAAAAACAG
ATGGGCTGGGAAGACCATTGTTGACCTCTTCACCGATGAGTTCAAGGGCCGGCCTCGTGA
ATATTATGTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTGGATGACCAAATGGTTCACGC
AGACTATGTTGTGCAATCATCACAAAAGATAAGCCATTTCTTGCACAGGCATGAACCTCC
AGTTTTGGGTGGTGATATTACAATCCTTCAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3596#0      CCGTCCTCTCCTCGCCCACCGCCGCCGCCGCCGCCGCCCATCCTCCTTCCTCTCCTCGGG 60
consensus_3596#1      ------------------------------------------------------------
                                                                                  

consensus_3596#0      CGCTGAACCGCCGAGCTGAGCAGCCGCCCCGCCGCCCCCTCCTCCGCCGCCACAAGCCCG 120
consensus_3596#1      ------------------------------------------------------------
                                                                                  

consensus_3596#0      ATCGAGGGGTGTCTCGCCCGGGATATATATATATGGCGGCGGGGCCGGCGGGGATCGTGT 180
consensus_3596#1      ------------------------------------------------------------
                                                                                  

consensus_3596#0      GGCAGACGCCGGCGAACCCGCCGGAGCGGCAGGACTACATCTTCCGCGACGGTAGTAGCA 240
consensus_3596#1      ------------------------------------------------------------
                                                                                  

consensus_3596#0      ACCCGCAGCCCGGCCTCCGTCTCGTCCCCAACGCGCGCATCTTTCTTTCTGCCCGCCAAA 300
consensus_3596#1      ------------------------------------------------GGGCGCGNGGGA 12
                                                                        ** **    *

consensus_3596#0      CCCCCTCCCCGGAGGCCCCGGACTGACGCGGTTGGTTATTCCCCCCCCATTTTGCTTCGC 360
consensus_3596#1      TCGTGTGGC-AGACGCGGCGAACC--CGCAGNCNGCAGGACTAC----ATCTT-CCGCGA 64
                       *   *  *  ** **  ** **   *** *   *     *  *    ** ** *  ** 

consensus_3596#0      AGGGCGGCGCTACGTGAGGCCCTACTACTTCGAGTTCATCTCCCATGTGAAAAACAGATG 420
consensus_3596#1      CGGGCG-CGCTACGTGAGGCCCTACTACTTCGAGTTCATCTCCCATGTGAAAAACAGATG 123
                       ***** *****************************************************

consensus_3596#0      GGCTGGGAAGACCATTGTTGACCTCTTCACCGATGAGTTCAAGGGCCGGCCTCGTGAATA 480
consensus_3596#1      GGCTGGGAAGACCATTGTTGACCTCTTCACCGATGAGTTCAAGGGCCGGCCTCGTGAATA 183
                      ************************************************************

consensus_3596#0      TTATGTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTGGATGACCAAATGGTTCACGCAGA 540
consensus_3596#1      TTATGTTCATGCAGTGAAGTGTGGGAGGCTTCAGGTGGATGACCAAATGGTTCACGCAGA 243
                      ************************************************************

consensus_3596#0      CTATGTTGTGCAATCATCACAAAAGATAAGCCATTTCTTGCACAGGCATGAACCTCCAGT 600
consensus_3596#1      CTATGTTGTGCAATCATCACAAAAGATAAGCCATTTCTTGCACAGGCATGAACCTCCAGT 303
                      ************************************************************

consensus_3596#0      TTTGGGTGGTGATATTACAATCCTTCAAAATGAAGCTGATGTTGTTACAGTTTGCAAACC 660
consensus_3596#1      TTTGGGTGGTGATATTACAATCCTTCAAAA------------------------------ 333
                      ******************************                              

consensus_3596#0      TGCATCTGTTCCAGTTCATCCGTGTGGTCAATACCGCAAGAATACTGTTGTCGGTATTCT 720
consensus_3596#1      ------------------------------------------------------------
                                                                                  

consensus_3596#0      GCAAGCTGAACATGGATTGGTGCCCCTATTTCTATTTTGACAGCCGTGCATCGGCTAGAT 780
consensus_3596#1      ------------------------------------------------------------
                                                                                  

consensus_3596#0      CGGTTAGTTTCAGGTCTCCTTATATTTGCTAAAAATGCTGACAAAGCTGAAAGTTTCAGG 840
consensus_3596#1      ------------------------------------------------------------
                                                                                  

consensus_3596#0      CAACAGATCGAAGCTAGTTTGCTGCAGAAAGAATATGTGGCCAAGGTTGTTGGGGTGTTT 900
consensus_3596#1      ------------------------------------------------------------
                                                                                  

consensus_3596#0      CCTGATGGTGAGCAAACTGTTAATGCAAATGTGCACTTCAACGCACGGGAAGGAAGGAGC 960
consensus_3596#1      ------------------------------------------------------------
                                                                                  

consensus_3596#0      ACTGCAGAGGTTTGTGATGGTGATGGTAAAGCTCCAATTGGAAAACAAGCCTGCACCAAG 1020
consensus_3596#1      ------------------------------------------------------------
                                                                                  

consensus_3596#0      TTTCAGAGGATCTGTACTGATGGAATCCACAGCATTGTCCTGTGCAAACCTGTGACTGGC 1080
consensus_3596#1      ------------------------------------------------------------
                                                                                  

consensus_3596#0      CGGACTCATCAGGTCACACTACCTTATACACATCAACATTGATTTGCTCGTTCAAACTTC 1140
consensus_3596#1      ------------------------------------------------------------
                                                                                  

consensus_3596#0      AAACAATCGAAACGACCTGGAAATTTCCCAAAAAAATGAATCTAAAAGCCTACTACATAG 1200
consensus_3596#1      ------------------------------------------------------------
                                                                                  

consensus_3596#0      AAAAAGTTCAAGTGGCCTTTAAACTTACTGCACTATCTGAATCATAATGGAAATCTTAAT 1260
consensus_3596#1      ------------------------------------------------------------
                                                                                  

consensus_3596#0      CCTGCTAGAGCTTGGCAAAATGCATTTTAGGTGCACACAGGTGACACGCAAACTGTTGAG 1320
consensus_3596#1      ------------------------------------------------------------
                                                                                  

consensus_3596#0      TGCCTCTTTATTTAGTCATAGCTCCCTTGTCCCTGTTTTGATAACATGCTTCATGCCCAA 1380
consensus_3596#1      ------------------------------------------------------------
                                                                                  

consensus_3596#0      TCCGTTACTTCCAAAATAATCAAATTATCAGACATCTGTTCACCATAGCATGTCTCTGAT 1440
consensus_3596#1      ------------------------------------------------------------
                                                                                  

consensus_3596#0      GCAAGATGAGATAGATGTGGTCATAATTTTTCTGCTGATTCTTTGTGCCAATAGTATGCC 1500
consensus_3596#1      ------------------------------------------------------------
                                                                                  

consensus_3596#0      CTCTTGTCCTATGGTTTTGTTTTTTCAGTTACTTATCTATATTTCTGATACAGCTTTTTG 1560
consensus_3596#1      ------------------------------------------------------------
                                                                                  

consensus_3596#0      TTTGACAAATGTAGATAAGGGTACATCTAAAACACATTGGTTACCCAATAGCCAATGACG 1620
consensus_3596#1      ------------------------------------------------------------
                                                                                  

consensus_3596#0      AGGTGTACCTTTCCGAGAATTTTTCTCCACGTTCGTCAAAGGGAACAAGAATCAACAGAG 1680
consensus_3596#1      ------------------------------------------------------------
                                                                                  

consensus_3596#0      CAACCACGCTAGCTTGTTCATTGCCATCTTCAGATCCTGACAGTTGTGCTGACCTTGGGA 1740
consensus_3596#1      ------------------------------------------------------------
                                                                                  

consensus_3596#0      ACAATGATACAAACGAAGATACAGAAGCCGATGAGGAGTTCAGCATCGATCC 1792
consensus_3596#1      ----------------------------------------------------