cluster # 3604

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Oryza sativa
cluster # 3604 cluster # 3604 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3604#0 length = 507 sequences # 1

consensus_3604#1 length = 346 sequences # 1

consensusID : consensus_3604#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 507
fasta sequence

                              [ATGCGGTGGCCGGCAAAATGTAGGTGGAATGACGGATGAGAAATTTCCCGACCGCCTCGGGGCTTTTCGCGCGTCGCTGCTGATCCGATGATGATGAACCATTGAAGAGAAGGTGTGGGATGGAATTTTTTTTTTTTTGAAAAAAAAAAAAGTTCTTCCCCCTGACAACAATTTGTGCGGTAAATTCATCGGCGCACCGGAGGATGTATTTTCGTAGTCCACCCCTTTTGTATACCGGCTTGTTTTCTCTCAGTGAAAATTGTGGGAGAAAACAGCTTGGAAGTTGCATGACAGGACTTAGATCAAATTTGTGAGGGTGCACTTCCAAGCCATTTTGGCCCTTCAGTTCATCTGATTTACTAATTTTAATTTCAGATTCCGGCTGTTAGTTGACATTTTATTGTCTGCTGCTTGCTTCTGTTTGTTGTTGGAAGCAGCCAATGTTCCCCCCTTACTAAACATCTTCAGGGAGCAAATTTGGCCCCCTTTTACTGAGCAAAAAAAAAA]

[+] EMBL BM419828             [ATGCGGTGGCCGGCAAAATGTAGGTGGAATGACGGATGAGAAATTTCCCGACCGCCTCGGGGCTTTTCGCGCGTCGCTGCTGATCCGATGATGATGAACCATTGAAGAGAAGGTGTGGGATGGAATTTTTTTTTTTTTGAAAAAAAAAAAAGTTCTTCCCCCTGACAACAATTTGTGCGGTAAATTCATCGGCGCACCGGAGGATGTATTTTCGTAGTCCACCCCTTTTGTATACCGGCTTGTTTTCTCTCAGTGAAAATTGTGGGAGAAAACAGCTTGGAAGTTGCATGACAGGACTTAGATCAAATTTGTGAGGGTGCACTTCCAAGCCATTTTGGCCCTTCAGTTCATCTGATTTACTAATTTTAATTTCAGATTCCGGCTGTTAGTTGACATTTTATTGTCTGCTGCTTGCTTCTGTTTGTTGTTGGAAGCAGCCAATGTTCCCCCCTTACTAAACATCTTCAGGGAGCAAATTTGGCCCCCTTTTACTGAGCAAAAAAAAAA]




>consensus_3604#0
ATGCGGTGGCCGGCAAAATGTAGGTGGAATGACGGATGAGAAATTTCCCGACCGCCTCGG
GGCTTTTCGCGCGTCGCTGCTGATCCGATGATGATGAACCATTGAAGAGAAGGTGTGGGA
TGGAATTTTTTTTTTTTTGAAAAAAAAAAAAGTTCTTCCCCCTGACAACAATTTGTGCGG
TAAATTCATCGGCGCACCGGAGGATGTATTTTCGTAGTCCACCCCTTTTGTATACCGGCT
TGTTTTCTCTCAGTGAAAATTGTGGGAGAAAACAGCTTGGAAGTTGCATGACAGGACTTA
GATCAAATTTGTGAGGGTGCACTTCCAAGCCATTTTGGCCCTTCAGTTCATCTGATTTAC
TAATTTTAATTTCAGATTCCGGCTGTTAGTTGACATTTTATTGTCTGCTGCTTGCTTCTG
TTTGTTGTTGGAAGCAGCCAATGTTCCCCCCTTACTAAACATCTTCAGGGAGCAAATTTG
GCCCCCTTTTACTGAGCAAAAAAAAAA

consensusID : consensus_3604#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 346
fasta sequence

                              [CTTTTTTTTTTTTTGCGCGGTAAANTCATCGGCGCACCGGAGGATGTGTTTTCGTAGNCCACCCCTTTTGTANACCGGCTTGTTTTCTCTCAGTGAAAANTGTGGGAGAAAACAGCTTGGAAGTTGCCTGACAGGACTTAGANCAAANTTGTGAGGGTGCACTTCCAANCCATTTTGGCCCTTCAGTTCATCTGATTTACTAANTTTAANTTCAGANTCCGGCTGTTAGTTGACANTTTATTGTCTGCTGCTTGCTTCTGTTCTTTGTTGTTGGAANCAGCCAATGTTCCCCCCTTACTAAANATCTTCAGGGAGCAAANTTGGCCCCCTTTTACTGANCAAAAAA]

[+] EMBL AU070428             [CTTTTTTTTTTTTTGCGCGGTAAANTCATCGGCGCACCGGAGGATGTGTTTTCGTAGNCCACCCCTTTTGTANACCGGCTTGTTTTCTCTCAGTGAAAANTGTGGGAGAAAACAGCTTGGAAGTTGCCTGACAGGACTTAGANCAAANTTGTGAGGGTGCACTTCCAANCCATTTTGGCCCTTCAGTTCATCTGATTTACTAANTTTAANTTCAGANTCCGGCTGTTAGTTGACANTTTATTGTCTGCTGCTTGCTTCTGTTCTTTGTTGTTGGAANCAGCCAATGTTCCCCCCTTACTAAANATCTTCAGGGAGCAAANTTGGCCCCCTTTTACTGANCAAAAAA]




>consensus_3604#1
CTTTTTTTTTTTTTGCGCGGTAAANTCATCGGCGCACCGGAGGATGTGTTTTCGTAGNCC
ACCCCTTTTGTANACCGGCTTGTTTTCTCTCAGTGAAAANTGTGGGAGAAAACAGCTTGG
AAGTTGCCTGACAGGACTTAGANCAAANTTGTGAGGGTGCACTTCCAANCCATTTTGGCC
CTTCAGTTCATCTGATTTACTAANTTTAANTTCAGANTCCGGCTGTTAGTTGACANTTTA
TTGTCTGCTGCTTGCTTCTGTTCTTTGTTGTTGGAANCAGCCAATGTTCCCCCCTTACTA
AANATCTTCAGGGAGCAAANTTGGCCCCCTTTTACTGANCAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3604#0      ATGCGGTGGCCGGCAAAATGTAGGTGGAATGACGGATGAGAAATTTCCCGACCGCCTCGG 60
consensus_3604#1      ------------------------------------------------------------
                                                                                  

consensus_3604#0      GGCTTTTCGCGCGTCGCTGCTGATCCGATGATGATGAACCATTGAAGAGAAGGTGTGGGA 120
consensus_3604#1      ------------------------------------------------------------
                                                                                  

consensus_3604#0      TGGAATTTTTTTTTTTTTGAAAAAAAAAAAAGTTCTTCCCCCTGACAACAATTTGTGCGG 180
consensus_3604#1      ----------------------------------------CTTTTTTTTTTTTTGCGCGG 20
                                                              * *        **** ****

consensus_3604#0      TAAATTCATCGGCGCACCGGAGGATGTATTTTCGTAGTCCACCCCTTTTGTATACCGGCT 240
consensus_3604#1      TAAANTCATCGGCGCACCGGAGGATGTGTTTTCGTAGNCCACCCCTTTTGTANACCGGCT 80
                      **** ********************** ********* ************** *******

consensus_3604#0      TGTTTTCTCTCAGTGAAAATTGTGGGAGAAAACAGCTTGGAAGTTGCATGACAGGACTTA 300
consensus_3604#1      TGTTTTCTCTCAGTGAAAANTGTGGGAGAAAACAGCTTGGAAGTTGCCTGACAGGACTTA 140
                      ******************* *************************** ************

consensus_3604#0      GATCAAATTTGTGAGGGTGCACTTCCAAGCCATTTTGGCCCTTCAGTTCATCTGATTTAC 360
consensus_3604#1      GANCAAANTTGTGAGGGTGCACTTCCAANCCATTTTGGCCCTTCAGTTCATCTGATTTAC 200
                      ** **** ******************** *******************************

consensus_3604#0      TAATTTTAATTTCAGATTCCGGCTGTTAGTTGACATTTTATTGTCTGCTGCTTGCTTCTG 420
consensus_3604#1      TAANTTTAANTTCAGANTCCGGCTGTTAGTTGACANTTTATTGTCTGCTGCTTGCTTCTG 260
                      *** ***** ****** ****************** ************************

consensus_3604#0      TT---TGTTGTTGGAAGCAGCCAATGTTCCCCCCTTACTAAACATCTTCAGGGAGCAAAT 477
consensus_3604#1      TTCTTTGTTGTTGGAANCAGCCAATGTTCCCCCCTTACTAAANATCTTCAGGGAGCAAAN 320
                      **   *********** ************************* **************** 

consensus_3604#0      TTGGCCCCCTTTTACTGAGCAAAAAAAAAA 507
consensus_3604#1      TTGGCCCCCTTTTACTGANCAAAAAA---- 346
                      ****************** *******