cluster # 3710

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Oryza sativa
cluster # 3710 cluster # 3710 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3710#0 length = 799 sequences # 1

consensus_3710#1 length = 792 sequences # 1

consensusID : consensus_3710#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 799
fasta sequence

                              [CTATCAGTCGTGCTGTTCTTCTTACTGGCATGCCACAGGGGGAGATCTTTAAATCCTCTTATGCTTCTGGCTAGCTAGATCAGAAGAATCACTTTAATGCAGGTGAGGTGAAGAACACAATTAGATAGCACTTCCCATTGAGAAAGTATGGCAGAAGCTGCAGTAGTCCAGGCCCTCATCAAGATTGGCACGACTTTTGGAGACGCGGCATTGCAATCGCTCAAAGACATCATAAAGAAAGAAGTAGCTCTGTTACAGGAACTACCAGAGCTCGCAAAATCCATTGGGAGGGAACTGGACATGATCAATAGCTTCCTTATGCAAGTGCGGGCGAAGATCCACAGCACTGACAATGAAGTTCTGAAACGCTGGGTGGTGAGAGTACGCCAGGTGGCCTACCATGTTGAGGACATAATAGATGAGTACTCCTACAATGTTGCTCTGCTGCAGGAGGAAAGCTATTTAAGTAGAATGATGCGTGCGACCTACTATGGTGTAACTTTCCATGGCATTGCTACTGGACTGAAAGATGTACAAAATGATATCAAGCAATTGTCGGATACTAAGACAAAATTTGCAGAGTTCTTCAATGAGTTACATAGCAACACTGGTAGTAACACACAATCTCATCTATCACGTGATAGATCCCTCCATACAGTTAAAGAAGGTATTGTTGGTATGACAGAAGAGGTAGATTTACTGAATTCATGGTTATCACCCAATGATCTCACTAGAGTAGTTTTATCTGTGTGGGGTCTGTTTGGGCTGGGGAAAACAACTCTGGTGAGAAAGGTGTATG]

[+] EMBL CB646162             [CTATCAGTCGTGCTGTTCTTCTTACTGGCATGCCACAGGGGGAGATCTTTAAATCCTCTTATGCTTCTGGCTAGCTAGATCAGAAGAATCACTTTAATGCAGGTGAGGTGAAGAACACAATTAGATAGCACTTCCCATTGAGAAAGTATGGCAGAAGCTGCAGTAGTCCAGGCCCTCATCAAGATTGGCACGACTTTTGGAGACGCGGCATTGCAATCGCTCAAAGACATCATAAAGAAAGAAGTAGCTCTGTTACAGGAACTACCAGAGCTCGCAAAATCCATTGGGAGGGAACTGGACATGATCAATAGCTTCCTTATGCAAGTGCGGGCGAAGATCCACAGCACTGACAATGAAGTTCTGAAACGCTGGGTGGTGAGAGTACGCCAGGTGGCCTACCATGTTGAGGACATAATAGATGAGTACTCCTACAATGTTGCTCTGCTGCAGGAGGAAAGCTATTTAAGTAGAATGATGCGTGCGACCTACTATGGTGTAACTTTCCATGGCATTGCTACTGGACTGAAAGATGTACAAAATGATATCAAGCAATTGTCGGATACTAAGACAAAATTTGCAGAGTTCTTCAATGAGTTACATAGCAACACTGGTAGTAACACACAATCTCATCTATCACGTGATAGATCCCTCCATACAGTTAAAGAAGGTATTGTTGGTATGACAGAAGAGGTAGATTTACTGAATTCATGGTTATCACCCAATGATCTCACTAGAGTAGTTTTATCTGTGTGGGGTCTGTTTGGGCTGGGGAAAACAACTCTGGTGAGAAAGGTGTATG]




>consensus_3710#0
CTATCAGTCGTGCTGTTCTTCTTACTGGCATGCCACAGGGGGAGATCTTTAAATCCTCTT
ATGCTTCTGGCTAGCTAGATCAGAAGAATCACTTTAATGCAGGTGAGGTGAAGAACACAA
TTAGATAGCACTTCCCATTGAGAAAGTATGGCAGAAGCTGCAGTAGTCCAGGCCCTCATC
AAGATTGGCACGACTTTTGGAGACGCGGCATTGCAATCGCTCAAAGACATCATAAAGAAA
GAAGTAGCTCTGTTACAGGAACTACCAGAGCTCGCAAAATCCATTGGGAGGGAACTGGAC
ATGATCAATAGCTTCCTTATGCAAGTGCGGGCGAAGATCCACAGCACTGACAATGAAGTT
CTGAAACGCTGGGTGGTGAGAGTACGCCAGGTGGCCTACCATGTTGAGGACATAATAGAT
GAGTACTCCTACAATGTTGCTCTGCTGCAGGAGGAAAGCTATTTAAGTAGAATGATGCGT
GCGACCTACTATGGTGTAACTTTCCATGGCATTGCTACTGGACTGAAAGATGTACAAAAT
GATATCAAGCAATTGTCGGATACTAAGACAAAATTTGCAGAGTTCTTCAATGAGTTACAT
AGCAACACTGGTAGTAACACACAATCTCATCTATCACGTGATAGATCCCTCCATACAGTT
AAAGAAGGTATTGTTGGTATGACAGAAGAGGTAGATTTACTGAATTCATGGTTATCACCC
AATGATCTCACTAGAGTAGTTTTATCTGTGTGGGGTCTGTTTGGGCTGGGGAAAACAACT
CTGGTGAGAAAGGTGTATG

consensusID : consensus_3710#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 792
fasta sequence

                              [TTCCCTCAGTCGTGCTGTTCTTCAGCTCTTCAGCATGTGTATATGATTCATATCATTTCTCTTGCTCTACTGAAGCCTTCACCCGTCGTGCTGTACTTGCTGGCATGTTACAGGTGTAGTGAAGAACAAAAAAGCTAGTGCGCCCCACAAGGATACGGCAAAGTATGGCGGAAGCTGCAGTAGTCCAGGCCCTCATTAAGATTGGATCTGCTTTTGGAGAAACAGCACTGCCATTACTCCAAGACTTCATAAAGAAAGAAGCAGCTCTGTTACAGGAACTACCAGAGCTCGCAAAATGCATTCGGGGGGAATTGGACATGATTAGTAGCTTCCTTCTGCAAGTGCGGTCGAAGATCCACAGCACCGACAATGAAGTTCTGAAACGCTGGGTGGTGAGAGTACGCCAGGTGGCCTACCATGTCGAGGACATAATAGATGAGTACACCCACAATGTTGCTCTGTTGCAGGACCAAAGTTATTTGATTAGAAAGATGCGTGAGGCCTACAATGTCACAACTTTCCATGCCATTGCTACTGGACTGAAAGATGTAAGTAATGAGATCAAGCAGTTGTCAGAAATGAAGACAAAATATGCAGAATACTTCGGTGAGTTACTTAGCAACACTAGTGCTAATACTCAAGCTCATCTCTCCCGTGATGGCTCCCTCCATACGGTTAAAGAAGGCATTGTAGGCATGACAGTAGAGATGGATTTACTGAATTCATGGTTAGCACCCAATGATCTCAGTAGAGTAGTGTTATCTGTGTGGGGTCTGTTTGGATTGGGGAAAA]

[+] EMBL CB630521             [TTCCCTCAGTCGTGCTGTTCTTCAGCTCTTCAGCATGTGTATATGATTCATATCATTTCTCTTGCTCTACTGAAGCCTTCACCCGTCGTGCTGTACTTGCTGGCATGTTACAGGTGTAGTGAAGAACAAAAAAGCTAGTGCGCCCCACAAGGATACGGCAAAGTATGGCGGAAGCTGCAGTAGTCCAGGCCCTCATTAAGATTGGATCTGCTTTTGGAGAAACAGCACTGCCATTACTCCAAGACTTCATAAAGAAAGAAGCAGCTCTGTTACAGGAACTACCAGAGCTCGCAAAATGCATTCGGGGGGAATTGGACATGATTAGTAGCTTCCTTCTGCAAGTGCGGTCGAAGATCCACAGCACCGACAATGAAGTTCTGAAACGCTGGGTGGTGAGAGTACGCCAGGTGGCCTACCATGTCGAGGACATAATAGATGAGTACACCCACAATGTTGCTCTGTTGCAGGACCAAAGTTATTTGATTAGAAAGATGCGTGAGGCCTACAATGTCACAACTTTCCATGCCATTGCTACTGGACTGAAAGATGTAAGTAATGAGATCAAGCAGTTGTCAGAAATGAAGACAAAATATGCAGAATACTTCGGTGAGTTACTTAGCAACACTAGTGCTAATACTCAAGCTCATCTCTCCCGTGATGGCTCCCTCCATACGGTTAAAGAAGGCATTGTAGGCATGACAGTAGAGATGGATTTACTGAATTCATGGTTAGCACCCAATGATCTCAGTAGAGTAGTGTTATCTGTGTGGGGTCTGTTTGGATTGGGGAAAA]




>consensus_3710#1
TTCCCTCAGTCGTGCTGTTCTTCAGCTCTTCAGCATGTGTATATGATTCATATCATTTCT
CTTGCTCTACTGAAGCCTTCACCCGTCGTGCTGTACTTGCTGGCATGTTACAGGTGTAGT
GAAGAACAAAAAAGCTAGTGCGCCCCACAAGGATACGGCAAAGTATGGCGGAAGCTGCAG
TAGTCCAGGCCCTCATTAAGATTGGATCTGCTTTTGGAGAAACAGCACTGCCATTACTCC
AAGACTTCATAAAGAAAGAAGCAGCTCTGTTACAGGAACTACCAGAGCTCGCAAAATGCA
TTCGGGGGGAATTGGACATGATTAGTAGCTTCCTTCTGCAAGTGCGGTCGAAGATCCACA
GCACCGACAATGAAGTTCTGAAACGCTGGGTGGTGAGAGTACGCCAGGTGGCCTACCATG
TCGAGGACATAATAGATGAGTACACCCACAATGTTGCTCTGTTGCAGGACCAAAGTTATT
TGATTAGAAAGATGCGTGAGGCCTACAATGTCACAACTTTCCATGCCATTGCTACTGGAC
TGAAAGATGTAAGTAATGAGATCAAGCAGTTGTCAGAAATGAAGACAAAATATGCAGAAT
ACTTCGGTGAGTTACTTAGCAACACTAGTGCTAATACTCAAGCTCATCTCTCCCGTGATG
GCTCCCTCCATACGGTTAAAGAAGGCATTGTAGGCATGACAGTAGAGATGGATTTACTGA
ATTCATGGTTAGCACCCAATGATCTCAGTAGAGTAGTGTTATCTGTGTGGGGTCTGTTTG
GATTGGGGAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3710#0      --CTATCAGTCGTGCTGTTCTTC---TTACTGGCATGC-CACAGGGGG------AGATCT 48
consensus_3710#1      TTCCCTCAGTCGTGCTGTTCTTCAGCTCTTCAGCATGTGTATATGATTCATATCATTTCT 60
                        *  ******************   *     *****   * * *         *  ***

consensus_3710#0      TTAAATCCTCTTATGCTTCTGGCTAGCTAGATCAGAAGAATCACTTTAATGCAGGTGAGG 108
consensus_3710#1      CTTGCTCTACTGAAGCCT-TCACCCGTCGTGCTGTACTTGCTGGCATGTTACAGGTGTAG 119
                       *   **  ** * ** * *  *  *         *          *  * ******  *

consensus_3710#0      TGAAGAACACAATTAGATAGCACTTCCCATTGAGA-------AAGTATGGCAGAAGCTGC 161
consensus_3710#1      TGAAGAACAAAAA-AGCTAGTGCGCCCCACAAGGATACGGCAAAGTATGGCGGAAGCTGC 178
                      ********* **  ** ***  *  ****    **       ********* ********

consensus_3710#0      AGTAGTCCAGGCCCTCATCAAGATTGGCACGACTTTTGGAGACGCGGCATTGCAATCGCT 221
consensus_3710#1      AGTAGTCCAGGCCCTCATTAAGATTGGATCTGCTTTTGGAGAAACAGCACTGCCATTACT 238
                      ****************** ********  *  **********  * *** *** **  **

consensus_3710#0      CAAAGACATCATAAAGAAAGAAGTAGCTCTGTTACAGGAACTACCAGAGCTCGCAAAATC 281
consensus_3710#1      CCAAGACTTCATAAAGAAAGAAGCAGCTCTGTTACAGGAACTACCAGAGCTCGCAAAATG 298
                      * ***** *************** *********************************** 

consensus_3710#0      CATTGGGAGGGAACTGGACATGATCAATAGCTTCCTTATGCAAGTGCGGGCGAAGATCCA 341
consensus_3710#1      CATTCGGGGGGAATTGGACATGATTAGTAGCTTCCTTCTGCAAGTGCGGTCGAAGATCCA 358
                      **** ** ***** ********** * ********** *********** **********

consensus_3710#0      CAGCACTGACAATGAAGTTCTGAAACGCTGGGTGGTGAGAGTACGCCAGGTGGCCTACCA 401
consensus_3710#1      CAGCACCGACAATGAAGTTCTGAAACGCTGGGTGGTGAGAGTACGCCAGGTGGCCTACCA 418
                      ****** *****************************************************

consensus_3710#0      TGTTGAGGACATAATAGATGAGTACTCCTACAATGTTGCTCTGCTGCAGGAGGAAAGCTA 461
consensus_3710#1      TGTCGAGGACATAATAGATGAGTACACCCACAATGTTGCTCTGTTGCAGGACCAAAGTTA 478
                      *** ********************* ** ************** *******  **** **

consensus_3710#0      TTTAAGTAGAATGATGCGTGCGACCTACTATGGTGTAACTTTCCATGGCATTGCTACTGG 521
consensus_3710#1      TTTGATTAGAAAGATGCGTGAGGCCTACAATGTCACAACTTTCCATGCCATTGCTACTGG 538
                      *** * ***** ******** * ***** ***    *********** ************

consensus_3710#0      ACTGAAAGATGTACAAAATGATATCAAGCAATTGTCGGATACTAAGACAAAATTTGCAGA 581
consensus_3710#1      ACTGAAAGATGTAAGTAATGAGATCAAGCAGTTGTCAGAAATGAAGACAAAATATGCAGA 598
                      *************   ***** ******** ***** ** *  ********** ******

consensus_3710#0      GTTCTTCAATGAGTTACATAGCAACACTGGTAGTAACACACAATCTCATCTATCACGTGA 641
consensus_3710#1      ATACTTCGGTGAGTTACTTAGCAACACTAGTGCTAATACTCAAGCTCATCTCTCCCGTGA 658
                       * ****  ******** ********** **  *** ** *** ******* ** *****

consensus_3710#0      TAGATCCCTCCATACAGTTAAAGAAGGTATTGTTGGTATGACAGAAGAGGTAGATTTACT 701
consensus_3710#1      TGGCTCCCTCCATACGGTTAAAGAAGGCATTGTAGGCATGACAGTAGAGATGGATTTACT 718
                      * * *********** *********** ***** ** ******* **** * ********

consensus_3710#0      GAATTCATGGTTATCACCCAATGATCTCACTAGAGTAGTTTTATCTGTGTGGGGTCTGTT 761
consensus_3710#1      GAATTCATGGTTAGCACCCAATGATCTCAGTAGAGTAGTGTTATCTGTGTGGGGTCTGTT 778
                      ************* *************** ********* ********************

consensus_3710#0      TGGGCTGGGGAAAACAACTCTGGTGAGAAAGGTGTATG 799
consensus_3710#1      TGGATTGGGGAAAA------------------------ 792
                      ***  *********