cluster # 3786

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Oryza sativa
cluster # 3786 cluster # 3786 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3786#0 length = 595 sequences # 1

consensus_3786#1 length = 229 sequences # 1

consensusID : consensus_3786#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 595
fasta sequence

                              [CAGAAACCTTCCAGACCGGAGTGGAGCCTCTCTGTCCCGTGGCGGCCATGTCAGCCGGAAGCGAAAGAGCCCACGCCGCCTTCGCGAGCCCCTCGCCGGTGTCGGGGGCCTTCTTCTCCGCCTCCGGCTCAATCCTCTCCGGCTCAATCCTCTCCGGCTCAATCCTCTCCTCCTCCTCCGCCGCTGTCACCACCACCACCAGCGCGGGTAGGACCCCGTCCTCCTCCTCCGGAGCGCCCACGAAAAAGAAGAAGAAGCCGCCGTTCCGCCCCGTCGCCGACGACACCAAGCCCGTCCTCCGCGACCCGATATCTCGGTCGGACCCGGTGGAGACCGAGCAGGCCGTGCTGCGGCTGCCGCCATTCCCCTAGGGTACAGGTCCGCACGCCGCTGACCGACGATGTTACTACCAGGGTTCAAGAATCAGGTATCGACATGATGATTAGCTCCTACATTTTTCTTCTGCGCAAGCCTGCCCATTGTCACTCCTATAATTTGCTCAGACTGTGGTATGTGTAGTGTACTACAGTACACTTGGCTACTCTGCTAAACCCTGTAGACGAAAAATCACTCTCTTAAATATTCATTGCCTCAT]

[+] EMBL AK108255             [CAGAAACCTTCCAGACCGGAGTGGAGCCTCTCTGTCCCGTGGCGGCCATGTCAGCCGGAAGCGAAAGAGCCCACGCCGCCTTCGCGAGCCCCTCGCCGGTGTCGGGGGCCTTCTTCTCCGCCTCCGGCTCAATCCTCTCCGGCTCAATCCTCTCCGGCTCAATCCTCTCCTCCTCCTCCGCCGCTGTCACCACCACCACCAGCGCGGGTAGGACCCCGTCCTCCTCCTCCGGAGCGCCCACGAAAAAGAAGAAGAAGCCGCCGTTCCGCCCCGTCGCCGACGACACCAAGCCCGTCCTCCGCGACCCGATATCTCGGTCGGACCCGGTGGAGACCGAGCAGGCCGTGCTGCGGCTGCCGCCATTCCCCTAGGGTACAGGTCCGCACGCCGCTGACCGACGATGTTACTACCAGGGTTCAAGAATCAGGTATCGACATGATGATTAGCTCCTACATTTTTCTTCTGCGCAAGCCTGCCCATTGTCACTCCTATAATTTGCTCAGACTGTGGTATGTGTAGTGTACTACAGTACACTTGGCTACTCTGCTAAACCCTGTAGACGAAAAATCACTCTCTTAAATATTCATTGCCTCAT]




>consensus_3786#0
CAGAAACCTTCCAGACCGGAGTGGAGCCTCTCTGTCCCGTGGCGGCCATGTCAGCCGGAA
GCGAAAGAGCCCACGCCGCCTTCGCGAGCCCCTCGCCGGTGTCGGGGGCCTTCTTCTCCG
CCTCCGGCTCAATCCTCTCCGGCTCAATCCTCTCCGGCTCAATCCTCTCCTCCTCCTCCG
CCGCTGTCACCACCACCACCAGCGCGGGTAGGACCCCGTCCTCCTCCTCCGGAGCGCCCA
CGAAAAAGAAGAAGAAGCCGCCGTTCCGCCCCGTCGCCGACGACACCAAGCCCGTCCTCC
GCGACCCGATATCTCGGTCGGACCCGGTGGAGACCGAGCAGGCCGTGCTGCGGCTGCCGC
CATTCCCCTAGGGTACAGGTCCGCACGCCGCTGACCGACGATGTTACTACCAGGGTTCAA
GAATCAGGTATCGACATGATGATTAGCTCCTACATTTTTCTTCTGCGCAAGCCTGCCCAT
TGTCACTCCTATAATTTGCTCAGACTGTGGTATGTGTAGTGTACTACAGTACACTTGGCT
ACTCTGCTAAACCCTGTAGACGAAAAATCACTCTCTTAAATATTCATTGCCTCAT

consensusID : consensus_3786#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 229
fasta sequence

                              [GAGCCTCTCTGTCCCGTGGCGGCCATGTCAGCCGGAAGCGAAAGAGCCCACGCCGCCTTCGCGAGCCCNTCGCCGGTGTCGGGGGCCTTCTTCTCCGNCTCCGGCTCAATCCTCTCCGGCTCAATCCTCTCCGGCTCAATCCTCTNCTCCTACTGCGACGCTGTCAACATCANCANCAGTGAGGGTAGGANCCNGTCCTTNNTTNTTCTGAGCGTCAGGAAAAAAGAAG]

[+] EMBL OSC28781             [GAGCCTCTCTGTCCCGTGGCGGCCATGTCAGCCGGAAGCGAAAGAGCCCACGCCGCCTTCGCGAGCCCNTCGCCGGTGTCGGGGGCCTTCTTCTCCGNCTCCGGCTCAATCCTCTCCGGCTCAATCCTCTCCGGCTCAATCCTCTNCTCCTACTGCGACGCTGTCAACATCANCANCAGTGAGGGTAGGANCCNGTCCTTNNTTNTTCTGAGCGTCAGGAAAAAAGAAG]




>consensus_3786#1
GAGCCTCTCTGTCCCGTGGCGGCCATGTCAGCCGGAAGCGAAAGAGCCCACGCCGCCTTC
GCGAGCCCNTCGCCGGTGTCGGGGGCCTTCTTCTCCGNCTCCGGCTCAATCCTCTCCGGC
TCAATCCTCTCCGGCTCAATCCTCTNCTCCTACTGCGACGCTGTCAACATCANCANCAGT
GAGGGTAGGANCCNGTCCTTNNTTNTTCTGAGCGTCAGGAAAAAAGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3786#0      CAGAAACCTTCCAGACCGGAGTGGAGCCTCTCTGTCCCGTGGCGGCCATGTCAGCCGGAA 60
consensus_3786#1      -----------------------GAGCCTCTCTGTCCCGTGGCGGCCATGTCAGCCGGAA 37
                                             *************************************

consensus_3786#0      GCGAAAGAGCCCACGCCGCCTTCGCGAGCCCCTCGCCGGTGTCGGGGGCCTTCTTCTCCG 120
consensus_3786#1      GCGAAAGAGCCCACGCCGCCTTCGCGAGCCCNTCGCCGGTGTCGGGGGCCTTCTTCTCCG 97
                      ******************************* ****************************

consensus_3786#0      CCTCCGGCTCAATCCTCTCCGGCTCAATCCTCTCCGGCTCAATCCTCTCCTCCTCCTCCG 180
consensus_3786#1      NCTCCGGCTCAATCCTCTCCGGCTCAATCCTCTCCGGCTCAATCCTCTNCTCCTACTGCG 157
                       *********************************************** ***** ** **

consensus_3786#0      CCGCTGTCACCACCACCACCAGCGCGGGTAGGACCCCGTCCT-CCTCCTCCGGAGCGCCC 239
consensus_3786#1      ACGCTGTCAACATCANCANCAGTGAGGGTAGGANCCNGTCCTTNNTTNTTCTGAGCGTCA 217
                       ******** ** ** ** *** * ******** ** *****   *  * * ***** * 

consensus_3786#0      ACGAAAAAGAAGAAGAAGCCGCCGTTCCGCCCCGTCGCCGACGACACCAAGCCCGTCCTC 299
consensus_3786#1      GGAAAAAAGAAG------------------------------------------------ 229
                         *********                                                

consensus_3786#0      CGCGACCCGATATCTCGGTCGGACCCGGTGGAGACCGAGCAGGCCGTGCTGCGGCTGCCG 359
consensus_3786#1      ------------------------------------------------------------
                                                                                  

consensus_3786#0      CCATTCCCCTAGGGTACAGGTCCGCACGCCGCTGACCGACGATGTTACTACCAGGGTTCA 419
consensus_3786#1      ------------------------------------------------------------
                                                                                  

consensus_3786#0      AGAATCAGGTATCGACATGATGATTAGCTCCTACATTTTTCTTCTGCGCAAGCCTGCCCA 479
consensus_3786#1      ------------------------------------------------------------
                                                                                  

consensus_3786#0      TTGTCACTCCTATAATTTGCTCAGACTGTGGTATGTGTAGTGTACTACAGTACACTTGGC 539
consensus_3786#1      ------------------------------------------------------------
                                                                                  

consensus_3786#0      TACTCTGCTAAACCCTGTAGACGAAAAATCACTCTCTTAAATATTCATTGCCTCAT 595
consensus_3786#1      --------------------------------------------------------