cluster # 3830

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Oryza sativa
cluster # 3830 cluster # 3830 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3830#0 length = 397 sequences # 1

consensus_3830#1 length = 394 sequences # 1

consensusID : consensus_3830#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 397
fasta sequence

                              [CAAAAATCTTTGGAATTTCAAAAAAAAAAAATCAAAAGCCCGAATTTGGAAAAAATACTGGGGACCTAAAAATAAATACTGGCAGTAGTTAGTCATGAGTTTTGTTGACCAAAAAATAAAAAATTCCCTTGGGGTTGTTGAATAAGTTGGATGGGGGGGCATACTCTGCCAGCTTTCCCTTGGCCAGCACCAAAACACGAACACTGTCGATGATGGGGTTGATTCTGTGCCCTTTGGGCACCACTGTTTGCTTCGAAAACTCTGTCCTGATGGGCTTCTGGATCAAAAAGTCTGTCTCATAGTCAACAGCCGCTGGGGCTTCGTCCATGACCAAAACTCGAGAGTTTCTCAAAAGTGCTCTTCCCAGGCACAAAAGTTGCCGCTGTCCCAAACTCAA]

[+] EMBL BI305491             [CAAAAATCTTTGGAATTTCAAAAAAAAAAAATCAAAAGCCCGAATTTGGAAAAAATACTGGGGACCTAAAAATAAATACTGGCAGTAGTTAGTCATGAGTTTTGTTGACCAAAAAATAAAAAATTCCCTTGGGGTTGTTGAATAAGTTGGATGGGGGGGCATACTCTGCCAGCTTTCCCTTGGCCAGCACCAAAACACGAACACTGTCGATGATGGGGTTGATTCTGTGCCCTTTGGGCACCACTGTTTGCTTCGAAAACTCTGTCCTGATGGGCTTCTGGATCAAAAAGTCTGTCTCATAGTCAACAGCCGCTGGGGCTTCGTCCATGACCAAAACTCGAGAGTTTCTCAAAAGTGCTCTTCCCAGGCACAAAAGTTGCCGCTGTCCCAAACTCAA]




>consensus_3830#0
CAAAAATCTTTGGAATTTCAAAAAAAAAAAATCAAAAGCCCGAATTTGGAAAAAATACTG
GGGACCTAAAAATAAATACTGGCAGTAGTTAGTCATGAGTTTTGTTGACCAAAAAATAAA
AAATTCCCTTGGGGTTGTTGAATAAGTTGGATGGGGGGGCATACTCTGCCAGCTTTCCCT
TGGCCAGCACCAAAACACGAACACTGTCGATGATGGGGTTGATTCTGTGCCCTTTGGGCA
CCACTGTTTGCTTCGAAAACTCTGTCCTGATGGGCTTCTGGATCAAAAAGTCTGTCTCAT
AGTCAACAGCCGCTGGGGCTTCGTCCATGACCAAAACTCGAGAGTTTCTCAAAAGTGCTC
TTCCCAGGCACAAAAGTTGCCGCTGTCCCAAACTCAA

consensusID : consensus_3830#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 394
fasta sequence

                              [CAAAAATCTTTGGAATATCAAAAAAAAAAAATCAAAAGCGCGAATATGGAAAAAATACTGTGGACATAAAAATAGATACTGTCAGTAGTTAGTCATGAGTATTGTTGACGAGAGAATAGAAGATTCCATTGGTGTTGTTGAGTAAGTGGGATGGGGTGTCATACTCTGCCAGCTTTCCCTTGTCCAGCACCAGAACACGATCACTGTCGATGATGGTGTTGATTCTGTGCGCTATGGTCACCACTGTTTGCTTCGAGAACTCTGTCCTGATGGTCTTCTGGATCAAAGAGTCTGTCTCATAGTCAACAGCCGCTGTGGCTTCGTCCATGACCAAGACTCGAGAGTTTCTCAGAAGTGCTCTTCCCAGGCACAGAAGTTGCCGCTGTCCCAAACT]

[+] EMBL CB965572             [CAAAAATCTTTGGAATATCAAAAAAAAAAAATCAAAAGCGCGAATATGGAAAAAATACTGTGGACATAAAAATAGATACTGTCAGTAGTTAGTCATGAGTATTGTTGACGAGAGAATAGAAGATTCCATTGGTGTTGTTGAGTAAGTGGGATGGGGTGTCATACTCTGCCAGCTTTCCCTTGTCCAGCACCAGAACACGATCACTGTCGATGATGGTGTTGATTCTGTGCGCTATGGTCACCACTGTTTGCTTCGAGAACTCTGTCCTGATGGTCTTCTGGATCAAAGAGTCTGTCTCATAGTCAACAGCCGCTGTGGCTTCGTCCATGACCAAGACTCGAGAGTTTCTCAGAAGTGCTCTTCCCAGGCACAGAAGTTGCCGCTGTCCCAAACT]




>consensus_3830#1
CAAAAATCTTTGGAATATCAAAAAAAAAAAATCAAAAGCGCGAATATGGAAAAAATACTG
TGGACATAAAAATAGATACTGTCAGTAGTTAGTCATGAGTATTGTTGACGAGAGAATAGA
AGATTCCATTGGTGTTGTTGAGTAAGTGGGATGGGGTGTCATACTCTGCCAGCTTTCCCT
TGTCCAGCACCAGAACACGATCACTGTCGATGATGGTGTTGATTCTGTGCGCTATGGTCA
CCACTGTTTGCTTCGAGAACTCTGTCCTGATGGTCTTCTGGATCAAAGAGTCTGTCTCAT
AGTCAACAGCCGCTGTGGCTTCGTCCATGACCAAGACTCGAGAGTTTCTCAGAAGTGCTC
TTCCCAGGCACAGAAGTTGCCGCTGTCCCAAACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3830#0      CAAAAATCTTTGGAATTTCAAAAAAAAAAAATCAAAAGCCCGAATTTGGAAAAAATACTG 60
consensus_3830#1      CAAAAATCTTTGGAATATCAAAAAAAAAAAATCAAAAGCGCGAATATGGAAAAAATACTG 60
                      **************** ********************** ***** **************

consensus_3830#0      GGGACCTAAAAATAAATACTGGCAGTAGTTAGTCATGAGTTTTGTTGACCAAAAAATAAA 120
consensus_3830#1      TGGACATAAAAATAGATACTGTCAGTAGTTAGTCATGAGTATTGTTGACGAGAGAATAGA 120
                       **** ******** ****** ****************** ******** * * **** *

consensus_3830#0      AAATTCCCTTGGGGTTGTTGAATAAGTTGGATGGGGGGGCATACTCTGCCAGCTTTCCCT 180
consensus_3830#1      AGATTCCATTGGTGTTGTTGAGTAAGTGGGATGGGGTGTCATACTCTGCCAGCTTTCCCT 180
                      * ***** **** ******** ***** ******** * *********************

consensus_3830#0      TGGCCAGCACCAAAACACGAACACTGTCGATGATGGGGTTGATTCTGTGCCCTTTGGGCA 240
consensus_3830#1      TGTCCAGCACCAGAACACGATCACTGTCGATGATGGTGTTGATTCTGTGCGCTATGGTCA 240
                      ** ********* ******* *************** ************* ** *** **

consensus_3830#0      CCACTGTTTGCTTCGAAAACTCTGTCCTGATGGGCTTCTGGATCAAAAAGTCTGTCTCAT 300
consensus_3830#1      CCACTGTTTGCTTCGAGAACTCTGTCCTGATGGTCTTCTGGATCAAAGAGTCTGTCTCAT 300
                      **************** **************** ************* ************

consensus_3830#0      AGTCAACAGCCGCTGGGGCTTCGTCCATGACCAAAACTCGAGAGTTTCTCAAAAGTGCTC 360
consensus_3830#1      AGTCAACAGCCGCTGTGGCTTCGTCCATGACCAAGACTCGAGAGTTTCTCAGAAGTGCTC 360
                      *************** ****************** **************** ********

consensus_3830#0      TTCCCAGGCACAAAAGTTGCCGCTGTCCCAAACTCAA 397
consensus_3830#1      TTCCCAGGCACAGAAGTTGCCGCTGTCCCAAACT--- 394
                      ************ *********************