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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_385#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[TTTTTTTTTTTTGCACGAGCTATTTTGCGTTTTGCCTTCTCTGTTGGAGACAGTCTCACAAAGGGAAAATGGACATGCTGCTGCAGCCTGCAAAAAATTTGATCAGCTTCCTTCCAAATGGAGATTTCCATCCTTGATGTCAGCAAATAGTTGGGCTGCTGTGCTTGTCTTCTCGTCGATAACCACCAGTCCACCACCCACTGAGCTCTAAGTTCAGGTCCCCTGGCAATTGGAAGGAGATACCCAGCCAGCTCTATAAGCAATCTCCACACCCTGTTTGAGTAGGGACAGGACACAATCAGATGAAACAATCTTTGTCAGCTGATGCACATAGAGCATCTTTGTTGGTGATCCACAGTTAGACATCTCCCTCTTGTCACCAACCAAATAAAAAACTTGACTGTAGAAGGCGCTTTTGTTGTCAAAATCATCTTGCCACAACTTATTTAATTTGGCCACAAAAAACATATCATACGCAGAGACACTGAGAAGCTACCAATAGACTAATTATCACTACCCTAATGTAGGCCGATATAAAAACACAAGACTGAACCTACCTCCTAGCATGAATAGAGTCATGGATGGAGAAATATTGAGGCAAATTAAGAGGGAATTGAATCCTTTGCTTCAGATAAGACCAATGATATCATTCTTCCACTCAGGATTCCNAGTGAATTTTACCGATCTCACCAT]
[+] EMBL CA760230 [TTTTTTTTTTTTGCACGAGCTATTTTGCGTTTTGCCTTCTCTGTTGGAGACAGTCTCACAAAGGGAAAATGGACATGCTGCTGCAGCCTGCAAAAAATTTGATCAGCTTCCTTCCAAATGGAGATTTCCATCCTTGATGTCAGCAAATAGTTGGGCTGCTGTGCTTGTCTTCTCGTCGATAACCACCAGTCCACCACCCACTGAGCTCTAAGTTCAGGTCCCCTGGCAATTGGAAGGAGATACCCAGCCAGCTCTATAAGCAATCTCCACACCCTGTTTGAGTAGGGACAGGACACAATCAGATGAAACAATCTTTGTCAGCTGATGCACATAGAGCATCTTTGTTGGTGATCCACAGTTAGACATCTCCCTCTTGTCACCAACCAAATAAAAAACTTGACTGTAGAAGGCGCTTTTGTTGTCAAAATCATCTTGCCACAACTTATTTAATTTGGCCACAAAAAACATATCATACGCAGAGACACTGAGAAGCTACCAATAGACTAATTATCACTACCCTAATGTAGGCCGATATAAAAACACAAGACTGAACCTACCTCCTAGCATGAATAGAGTCATGGATGGAGAAATATTGAGGCAAATTAAGAGGGAATTGAATCCTTTGCTTCAGATAAGACCAATGATATCATTCTTCCACTCAGGATTCCNAGTGAATTTTACCGATCTCACCAT]
consensusID : consensus_385#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence
[TTTTTTTACTTTGCCCCTCTCCTCTCTCTCTCCCCTCTCTTCCTTTCCCCCATCGGCCACACGAGAGAGCCGGGGGAGATGGAGGACTTTGTTTATACATTGACTCTTTTTACTTTTCCCCTATACTCTCTTTCTCCCCGCTCTTCCTTTCCCCCACCGGCCACCGAGAGAGCCTGGGGAGAAGGAGGACTTTTTCTTCACCTGAGCTCTATTTACTTTTCCCCTGTCCACTGTATGGACACACTCTGCCATTCCCCATAAGCAACACCCACACACTGTTTGAAGAGGGACGGGACTCTATTAAATGAAACAATTTTTGCCAGCCCACGCACCTAGAGCACCCTTTTTGGTGACCCACAGGTACACATATACATCTTGGCAAAACCAGAGGAAAAACTTGACTGTAGAAGGCGCTATTGTTGCCAAAATCATCTTGCCACAACTTATTTAATTTGGCCACAAAAAACATATCAGACGCAGAGACACTGAGAAGGCTCCAATAGACTAATTATCACTACCCTAATGCCGGCCGATATAAAAACACAAGACTGAACCTACCTCCTAGCATGAATAGAGGCATGGATGGAGAAATATCGAGGCATATTAAGAGGGGAATGAATCCTTTGCTTCAGATAAGACCAAGGATAGCATTCTCCCACTTGGGATTCCGAGTGAATTTTACC]
[+] EMBL CA760536 [TTTTTTTACTTTGCCCCTCTCCTCTCTCTCTCCCCTCTCTTCCTTTCCCCCATCGGCCACACGAGAGAGCCGGGGGAGATGGAGGACTTTGTTTATACATTGACTCTTTTTACTTTTCCCCTATACTCTCTTTCTCCCCGCTCTTCCTTTCCCCCACCGGCCACCGAGAGAGCCTGGGGAGAAGGAGGACTTTTTCTTCACCTGAGCTCTATTTACTTTTCCCCTGTCCACTGTATGGACACACTCTGCCATTCCCCATAAGCAACACCCACACACTGTTTGAAGAGGGACGGGACTCTATTAAATGAAACAATTTTTGCCAGCCCACGCACCTAGAGCACCCTTTTTGGTGACCCACAGGTACACATATACATCTTGGCAAAACCAGAGGAAAAACTTGACTGTAGAAGGCGCTATTGTTGCCAAAATCATCTTGCCACAACTTATTTAATTTGGCCACAAAAAACATATCAGACGCAGAGACACTGAGAAGGCTCCAATAGACTAATTATCACTACCCTAATGCCGGCCGATATAAAAACACAAGACTGAACCTACCTCCTAGCATGAATAGAGGCATGGATGGAGAAATATCGAGGCATATTAAGAGGGGAATGAATCCTTTGCTTCAGATAAGACCAAGGATAGCATTCTCCCACTTGGGATTCCGAGTGAATTTTACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_385#0 TTTTTTTTTTTTGCACGAGCTATTTTGCGTTTTGCCTTCTCTGTTGGAGACAGTC-TCAC 59
consensus_385#1 TTTTTTTACTTTGCCCCTCTCCTCTCTCTCTCCCCTCTCTTCCTTTCCCCCATCGGCCAC 60
******* ***** * * * * * * *** ** ** ***
consensus_385#0 AAAGGGAAAATGGACATGCTGCTGCAGCCTGCAAAAAATTTGATCAGCTTCCTTCCAAAT 119
consensus_385#1 ACGAGAGAGCCGGGGGAGATGGAGGACTTTGTTTATACATTGACTCTTTTTACTTTTCCC 120
* * * ** * ** * * ** * * **** ** *
consensus_385#0 GGAGATTTCCATCCTTGATGTCAGCAAATAGTTGGGCTGCTGTGCTTGTCTTCTCGTCGA 179
consensus_385#1 CTATACTCTCTTTCTCCCCGCTCTTCCTTTCCCCCACCGGCCACCGAGAGAGCCTGGGGA 180
* * * * * ** * * * * * * * * **
consensus_385#0 TAACCACCAGTCCACCACCCACTGAGCTCTAAGTTCAGGTCCCCTGGCAATTGGAAGGAG 239
consensus_385#1 GAAGGAGGACTTTTTCTTCACCTGAGCTCTATTTACTTTTCCCCTGTCCACTGTATGGAC 240
** * * * * * ********** * * ******* * * ** * ***
consensus_385#0 ATACCCAGCCAG-CTCTATAAGCAATCTCCACACCCTGTTTGAGTAGGGACAGGACACAA 298
consensus_385#1 ACACTCTGCCATTCCCCATAAGCAACACCCACACACTGTTTGAAGAGGGACGGGACTCTA 300
* ** * **** * * ******** ****** ******** ****** **** * *
consensus_385#0 TCAGATGAAACAATCTTTGTCAGCTGATGCACATAGAGCATCTTTGTTGGTGATCCACAG 358
consensus_385#1 TTAAATGAAACAATTTTTGCCAGCCCACGCACCTAGAGCACCCTTTTTGGTGACCCACAG 360
* * ********** **** **** * **** ******* * ** ******* ******
consensus_385#0 TTAGACATCTCCCTCTTGTCACCAACCAAATAAAAAACTTGACTGTAGAAGGCGCTTTTG 418
consensus_385#1 GTACACATATACATCTTGGCAA-AACCAGAGGAAAAACTTGACTGTAGAAGGCGCTATTG 419
** **** * * ***** ** ***** * ************************ ***
consensus_385#0 TTGTCAAAATCATCTTGCCACAACTTATTTAATTTGGCCACAAAAAACATATCATACGCA 478
consensus_385#1 TTGCCAAAATCATCTTGCCACAACTTATTTAATTTGGCCACAAAAAACATATCAGACGCA 479
*** ************************************************** *****
consensus_385#0 GAGACACTGAGAAGCTACCAATAGACTAATTATCACTACCCTAATGTAGGCCGATATAAA 538
consensus_385#1 GAGACACTGAGAAGGCTCCAATAGACTAATTATCACTACCCTAATGCCGGCCGATATAAA 539
************** ***************************** ************
consensus_385#0 AACACAAGACTGAACCTACCTCCTAGCATGAATAGAGTCATGGATGGAGAAATATTGAGG 598
consensus_385#1 AACACAAGACTGAACCTACCTCCTAGCATGAATAGAGGCATGGATGGAGAAATATCGAGG 599
************************************* ***************** ****
consensus_385#0 CAAATTAAGAGGGAATTGAATCCTTTGCTTCAGATAAGACCAATGATATCATTCTTCCAC 658
consensus_385#1 CATATTAAGAGGGGAATGAATCCTTTGCTTCAGATAAGACCAAGGATAGCATTCTCCCAC 659
** ********** * *************************** **** ****** ****
consensus_385#0 TCAGGATTCCNAGTGAATTTTACCGATCTCACCAT 693
consensus_385#1 TTGGGATTCCGAGTGAATTTTACC----------- 683
* ******* *************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||