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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3855#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 783 fasta sequence
[TCTCCCATACCGAGTGCCCGCGATCCCCCTCCAGATCAAGCCCTCCGCCGGTGCCGTCCCACCGCCGGCCCCGTCCATCCATCAGCGTCGCCCTTCTCCTCCGCGCTGTCATTCGCTGTCGAGGCCGCCGCCTTCCCCAGTCCTAGACCTGTCGGCCCGGATAGGGATCTCACCGCCACCGTTGTCCCCATCGTCGTATCTCGCCGTCGCCGCAACCTACAAGGCTACAAGCCACGGAACCTGAAATTATTTGTATGCATGTGCATTCTCATGCTGTTGGAGATGCATGTGTGTGGCGGCGGCTGCCTGTGGGTGGCACATGCATGTGGCATTGTGATCAGTAGAGCGTCAACCCCGGCGGAGGCTGTGGGCGAGGGTGCGGCAGCTATGAGTGGCGTAGGTGTGCGGCGCGGCGGCGAGTGGAGGCACAGGTGGCTCAAGGCCAAAAGCGAGTACTATTACTGCATATACTCGTTTTGGAGAGGGATATGCTTTTAAAATGCTGCAATGCGAAACTGTGCCACTTCGCCCACGCCTCTTTCCGCACTGAGTCGATGCCGGTAGCACAACCGACGAGATAAATTTCTTTTCTTTGCAAACTCCTGTTCTTCCCAACTTCTGGAAGCCTTTTGTTCCTTTTCTATTTCAGCGAATAACAATGATATTTCACTAGGATTATACTGCAGGTTTATGCATGTTACTAGCCAATCTTANATATATCAAACTTTATTGACTGAGTTGAGTGATTAGGTGTCAAGTTGCAATTTATATATCAAACATCGG]
[+] EMBL CB634855 [TCTCCCATACCGAGTGCCCGCGATCCCCCTCCAGATCAAGCCCTCCGCCGGTGCCGTCCCACCGCCGGCCCCGTCCATCCATCAGCGTCGCCCTTCTCCTCCGCGCTGTCATTCGCTGTCGAGGCCGCCGCCTTCCCCAGTCCTAGACCTGTCGGCCCGGATAGGGATCTCACCGCCACCGTTGTCCCCATCGTCGTATCTCGCCGTCGCCGCAACCTACAAGGCTACAAGCCACGGAACCTGAAATTATTTGTATGCATGTGCATTCTCATGCTGTTGGAGATGCATGTGTGTGGCGGCGGCTGCCTGTGGGTGGCACATGCATGTGGCATTGTGATCAGTAGAGCGTCAACCCCGGCGGAGGCTGTGGGCGAGGGTGCGGCAGCTATGAGTGGCGTAGGTGTGCGGCGCGGCGGCGAGTGGAGGCACAGGTGGCTCAAGGCCAAAAGCGAGTACTATTACTGCATATACTCGTTTTGGAGAGGGATATGCTTTTAAAATGCTGCAATGCGAAACTGTGCCACTTCGCCCACGCCTCTTTCCGCACTGAGTCGATGCCGGTAGCACAACCGACGAGATAAATTTCTTTTCTTTGCAAACTCCTGTTCTTCCCAACTTCTGGAAGCCTTTTGTTCCTTTTCTATTTCAGCGAATAACAATGATATTTCACTAGGATTATACTGCAGGTTTATGCATGTTACTAGCCAATCTTANATATATCAAACTTTATTGACTGAGTTGAGTGATTAGGTGTCAAGTTGCAATTTATATATCAAACATCGG]
consensusID : consensus_3855#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence
[GCCGTCATTCGCTGTCGAGGCCGCCGCCTTCCCCAATCCTAGACCTATTGGCCCGGATAGGGGATCTCGCCGCCATCGTCGTATCTCGCCGTCGCCGCAACCTACAAGCCACGGAATCTGAAATTATTTGTATACATGTGCATTCTCATGCTGTTGGAGATGCATGTGTGTGGCGGCGGCTGCCTGTGGGTGGCACATGCATGTGGCGTCGTGGTCAGTAGAGCGTCAACCCCCGCGGAGGCTATGAGTGGCGTAGGTGTGCGGCGCGGCGGCGAGTGGAGGCGCAGGTGGCTCAAGGCCAAAAGCGAGTACTATTACTGCATATACATGTTTTGGAGAGCGATATGCGTTTAAAATGCTGCAATGCGAAACTGTGCCACTTTGCCCACGCCTCTTTCCGCACTGAGTCGATGCCGGTAGCACAACCGACGAGGTCTTCAGCGAGTGTCAAGTGTTGTGTGATGATATAGTAGGGGACATGCACTGTGAGTAGTATNTAT]
[+] EMBL CB641038 [GCCGTCATTCGCTGTCGAGGCCGCCGCCTTCCCCAATCCTAGACCTATTGGCCCGGATAGGGGATCTCGCCGCCATCGTCGTATCTCGCCGTCGCCGCAACCTACAAGCCACGGAATCTGAAATTATTTGTATACATGTGCATTCTCATGCTGTTGGAGATGCATGTGTGTGGCGGCGGCTGCCTGTGGGTGGCACATGCATGTGGCGTCGTGGTCAGTAGAGCGTCAACCCCCGCGGAGGCTATGAGTGGCGTAGGTGTGCGGCGCGGCGGCGAGTGGAGGCGCAGGTGGCTCAAGGCCAAAAGCGAGTACTATTACTGCATATACATGTTTTGGAGAGCGATATGCGTTTAAAATGCTGCAATGCGAAACTGTGCCACTTTGCCCACGCCTCTTTCCGCACTGAGTCGATGCCGGTAGCACAACCGACGAGGTCTTCAGCGAGTGTCAAGTGTTGTGTGATGATATAGTAGGGGACATGCACTGTGAGTAGTATNTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3855#0 TCTCCCATACCGAGTGCCCGCGATCCCCCTCCAGATCAAGCCCTCCGCCGGTGCCGTCCC 60
consensus_3855#1 ------------------------------------------------------------
consensus_3855#0 ACCGCCGGCCCCGTCCATCCATCAGCGTCGCCCTTCTCCTCCGCGCTGTCATTCGCTGTC 120
consensus_3855#1 --------------------------------------------GCCGTCATTCGCTGTC 16
** *************
consensus_3855#0 GAGGCCGCCGCCTTCCCCAGTCCTAGACCTGTCGGCCCGGATAGGG-ATCTCACCGCCAC 179
consensus_3855#1 GAGGCCGCCGCCTTCCCCAATCCTAGACCTATTGGCCCGGATAGGGGATCTCGCCGCCA- 75
******************* ********** * ************* ***** ******
consensus_3855#0 CGTTGTCCCCATCGTCGTATCTCGCCGTCGCCGCAACCTACAAGGCTACAAGCCACGGAA 239
consensus_3855#1 -----------TCGTCGTATCTCGCCGTCGCCGCAACCTACAAG--------CCACGGAA 116
********************************* ********
consensus_3855#0 CCTGAAATTATTTGTATGCATGTGCATTCTCATGCTGTTGGAGATGCATGTGTGTGGCGG 299
consensus_3855#1 TCTGAAATTATTTGTATACATGTGCATTCTCATGCTGTTGGAGATGCATGTGTGTGGCGG 176
**************** ******************************************
consensus_3855#0 CGGCTGCCTGTGGGTGGCACATGCATGTGGCATTGTGATCAGTAGAGCGTCAACCCCGGC 359
consensus_3855#1 CGGCTGCCTGTGGGTGGCACATGCATGTGGCGTCGTGGTCAGTAGAGCGTCAACCCCCGC 236
******************************* * *** ******************* **
consensus_3855#0 GGAGGCTGTGGGCGAGGGTGCGGCAGCTATGAGTGGCGTAGGTGTGCGGCGCGGCGGCGA 419
consensus_3855#1 GGAGGCT---------------------ATGAGTGGCGTAGGTGTGCGGCGCGGCGGCGA 275
******* ********************************
consensus_3855#0 GTGGAGGCACAGGTGGCTCAAGGCCAAAAGCGAGTACTATTACTGCATATACTCGTTTTG 479
consensus_3855#1 GTGGAGGCGCAGGTGGCTCAAGGCCAAAAGCGAGTACTATTACTGCATATACATGTTTTG 335
******** ******************************************* ******
consensus_3855#0 GAGAGGGATATGCTTTTAAAATGCTGCAATGCGAAACTGTGCCACTTCGCCCACGCCTCT 539
consensus_3855#1 GAGAGCGATATGCGTTTAAAATGCTGCAATGCGAAACTGTGCCACTTTGCCCACGCCTCT 395
***** ******* ********************************* ************
consensus_3855#0 TTCCGCACTGAGTCGATGCCGGTAGCACAACCGACGAGATAAATTTCTTTTCTTTGCAAA 599
consensus_3855#1 TTCCGCACTGAGTCGATGCCGGTAGCACAACCGACGAGGT---CTTCAGCGAGTGTCAAG 452
************************************** * *** * ***
consensus_3855#0 C-TCCTGTTCTTCCCAACTTCTGGAAGCCTTTTGTTCCTTTTCTATTTCAGCGAATAACA 658
consensus_3855#1 TGTTGTGTGATGATATAGTAGGGGACATGCACTGTGAGTAGTATNTAT------------ 500
* *** * * * *** *** * * * * *
consensus_3855#0 ATGATATTTCACTAGGATTATACTGCAGGTTTATGCATGTTACTAGCCAATCTTANATAT 718
consensus_3855#1 ------------------------------------------------------------
consensus_3855#0 ATCAAACTTTATTGACTGAGTTGAGTGATTAGGTGTCAAGTTGCAATTTATATATCAAAC 778
consensus_3855#1 ------------------------------------------------------------
consensus_3855#0 ATCGG 783
consensus_3855#1 -----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||