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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3866#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1244 fasta sequence
[CTGCGCCTCCTCCCCCCTCCATCCATCGCCGCCGCTTCCGCTGCGCTCTCCTTCATCGCCATCGTTGTTCGCCCTACGCCCGGCGGCGAGGAGAGGACGGGAGGAGACGGTCACCGAGAGCGTGTGTGGGTCACCTCGTGCCCTAGCGGGGCGCCCCATCGTGGTGGTGGTGGTGGTGGAGGATCCCGCGCCGGCATGGAGGGAGGGGACAGCGTCCTGGACGCGGTGCTCGACGAGGAAGCCCTAGACTACGACGGCGATGACGTCGAGATGGCGGACGCGGACGACGCCGTAGAGGAGGCGCAGGCGCAGGAGGATCCTGTAGCCATCACCGCCCCCACTGCCGCCGCCACCGGAGGAGGAGGAGGAGGAGGAGAAGGCGATGGCGGCGTGGGGCAGGCGGGGAAGAACAAGAACAAGAAGAAGAAGAAGAGGAAGAAATCCGCGAGGACGAAGAACAAGGGGAAGCCCGACGGGCCGCCCAAGATCGCCGACATTAACAGATTTGTTAATGAAACTTGCAAGCGCTTGAAGGAGAAGAAGTCCTATCTTGTTTGGAATGCTGTTGGCTGCCTTGGTGTTTCTGCTATCAGTGATCTTGTTAGAGAGGTTGAGGCCATCCAGAAGTGTGGAGGCCAGATTGTTGCTGATGGAAGTCGCTTCCGCACCGGTGGTGGAATCCTGTGGAACATCTTGAAGTCACGGGAGCCAAAGGCATATAAGGAAATTATGGCGAAGGGAAGGGAGCTTGAGAAGCAATTCAGGTACAAACAAGGCAGGCCGCAAACAAGCAGAAATGAAGATGCAAGCTCACAGGGAAGTGCGCTAATTGACGAGGATATTGAACCACATGGTGAAAAGGAAGTATCGGATGATCCTGAGCGGTTAATTGACGCGGAGAAGTCACCACATGTACCTGATAATAACAAAGCTGAACGCAAACCATTAGCAGACAGGATTCGTGTTCTTGTTGCTTATGATGATCTATTTGAAGAGGGAGAGATACACGAAGGGGATGCGCCATGAAGTATTTCGAAAGTCTTGCCCTTTCAACCCCTCTTGAGCGTTAATTCTTGAAGCAAACATCACCGAATGGGAAAAAGGGCATGTGTATTAATCGACATTACAGTGAGGCAATTCTTTTTCCAATTTTGCCTTTATATGTGCCTGATTGGGCAGTAAGGCAGCGGATGAGTTTTTTGTTGAGAGCAGTGAGCTGAAACAAACTCAATATTAATGGAAAG]
[+] EMBL AK102611 [CTGCGCCTCCTCCCCCCTCCATCCATCGCCGCCGCTTCCGCTGCGCTCTCCTTCATCGCCATCGTTGTTCGCCCTACGCCCGGCGGCGAGGAGAGGACGGGAGGAGACGGTCACCGAGAGCGTGTGTGGGTCACCTCGTGCCCTAGCGGGGCGCCCCATCGTGGTGGTGGTGGTGGTGGAGGATCCCGCGCCGGCATGGAGGGAGGGGACAGCGTCCTGGACGCGGTGCTCGACGAGGAAGCCCTAGACTACGACGGCGATGACGTCGAGATGGCGGACGCGGACGACGCCGTAGAGGAGGCGCAGGCGCAGGAGGATCCTGTAGCCATCACCGCCCCCACTGCCGCCGCCACCGGAGGAGGAGGAGGAGGAGGAGAAGGCGATGGCGGCGTGGGGCAGGCGGGGAAGAACAAGAACAAGAAGAAGAAGAAGAGGAAGAAATCCGCGAGGACGAAGAACAAGGGGAAGCCCGACGGGCCGCCCAAGATCGCCGACATTAACAGATTTGTTAATGAAACTTGCAAGCGCTTGAAGGAGAAGAAGTCCTATCTTGTTTGGAATGCTGTTGGCTGCCTTGGTGTTTCTGCTATCAGTGATCTTGTTAGAGAGGTTGAGGCCATCCAGAAGTGTGGAGGCCAGATTGTTGCTGATGGAAGTCGCTTCCGCACCGGTGGTGGAATCCTGTGGAACATCTTGAAGTCACGGGAGCCAAAGGCATATAAGGAAATTATGGCGAAGGGAAGGGAGCTTGAGAAGCAATTCAGGTACAAACAAGGCAGGCCGCAAACAAGCAGAAATGAAGATGCAAGCTCACAGGGAAGTGCGCTAATTGACGAGGATATTGAACCACATGGTGAAAAGGAAGTATCGGATGATCCTGAGCGGTTAATTGACGCGGAGAAGTCACCACATGTACCTGATAATAACAAAGCTGAACGCAAACCATTAGCAGACAGGATTCGTGTTCTTGTTGCTTATGATGATCTATTTGAAGAGGGAGAGATACACGAAGGGGATGCGCCATGAAGTATTTCGAAAGTCTTGCCCTTTCAACCCCTCTTGAGCGTTAATTCTTGAAGCAAACATCACCGAATGGGAAAAAGGGCATGTGTATTAATCGACATTACAGTGAGGCAATTCTTTTTCCAATTTTGCCTTTATATGTGCCTGATTGGGCAGTAAGGCAGCGGATGAGTTTTTTGTTGAGAGCAGTGAGCTGAAACAAACTCAATATTAATGGAAAG]
consensusID : consensus_3866#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 221 fasta sequence
[GGACGNAGNACAAGGGGAAGCCCGNCGGCCTGNCCAAGATCGCCGTCATTAACAGATTTGTTAATGNAACTTTGCAAGCGCTTNAAGGAGAAGNAGTCCTATCTTGTTTGGAATGCTGTTGGCTGCCTTGGTGTTTCTGCTATCAGTGATCTTGTTAGAGAGTTACATGGATTAGTTTGTTAAGTGTACTTGAGAAGTTTGGCGTTTCTCAGAAGAGTCTG]
[+] EMBL OSS0880A [GGACGNAGNACAAGGGGAAGCCCGNCGGCCTGNCCAAGATCGCCGTCATTAACAGATTTGTTAATGNAACTTTGCAAGCGCTTNAAGGAGAAGNAGTCCTATCTTGTTTGGAATGCTGTTGGCTGCCTTGGTGTTTCTGCTATCAGTGATCTTGTTAGAGAGTTACATGGATTAGTTTGTTAAGTGTACTTGAGAAGTTTGGCGTTTCTCAGAAGAGTCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3866#0 CTGCGCCTCCTCCCCCCTCCATCCATCGCCGCCGCTTCCGCTGCGCTCTCCTTCATCGCC 60
consensus_3866#1 ------------------------------------------------------------
consensus_3866#0 ATCGTTGTTCGCCCTACGCCCGGCGGCGAGGAGAGGACGGGAGGAGACGGTCACCGAGAG 120
consensus_3866#1 ------------------------------------------------------------
consensus_3866#0 CGTGTGTGGGTCACCTCGTGCCCTAGCGGGGCGCCCCATCGTGGTGGTGGTGGTGGTGGA 180
consensus_3866#1 ------------------------------------------------------------
consensus_3866#0 GGATCCCGCGCCGGCATGGAGGGAGGGGACAGCGTCCTGGACGCGGTGCTCGACGAGGAA 240
consensus_3866#1 ------------------------------------------------------------
consensus_3866#0 GCCCTAGACTACGACGGCGATGACGTCGAGATGGCGGACGCGGACGACGCCGTAGAGGAG 300
consensus_3866#1 ------------------------------------------------------------
consensus_3866#0 GCGCAGGCGCAGGAGGATCCTGTAGCCATCACCGCCCCCACTGCCGCCGCCACCGGAGGA 360
consensus_3866#1 ------------------------------------------------------------
consensus_3866#0 GGAGGAGGAGGAGGAGAAGGCGATGGCGGCGTGGGGCAGGCGGGGAAGAACAAGAACAAG 420
consensus_3866#1 ------------------------------------------------------------
consensus_3866#0 AAGAAGAAGAAGAGGAAGAAATCCGCGAGGACGAAGAACAAGGGGAAGCCCGACGGGCCG 480
consensus_3866#1 ----------------------------GGACGNAGNACAAGGGGAAGCCCGNCGGCCTG 32
***** ** *************** *** * *
consensus_3866#0 CCCAAGATCGCCGACATTAACAGATTTGTTAATGAAACTT-GCAAGCGCTTGAAGGAGAA 539
consensus_3866#1 NCCAAGATCGCCGTCATTAACAGATTTGTTAATGNAACTTTGCAAGCGCTTNAAGGAGAA 92
************ ******************** ***** ********** ********
consensus_3866#0 GAAGTCCTATCTTGTTTGGAATGCTGTTGGCTGCCTTGGTGTTTCTGCTATCAGTGATCT 599
consensus_3866#1 GNAGTCCTATCTTGTTTGGAATGCTGTTGGCTGCCTTGGTGTTTCTGCTATCAGTGATCT 152
* **********************************************************
consensus_3866#0 TGTTAGAGAGGTTGAGGCCATCCAGAAGTGTGGAGGCCAGATTGTTGCTGATGGAAGTCG 659
consensus_3866#1 TGTTAGAGAGTTA-----CATGGATTAGTTTG-----TTAAGTGTACTTGA--GAAG--- 197
********** * *** * *** ** * *** *** ****
consensus_3866#0 CTTCCGCACCGGTGGTGGAATCCTGTGGAACATCTTGAAGTCACGGGAGCCAAAGGCATA 719
consensus_3866#1 -TTTGGCGTTTCTCAGAAGAGTCTG----------------------------------- 221
** ** * * ***
consensus_3866#0 TAAGGAAATTATGGCGAAGGGAAGGGAGCTTGAGAAGCAATTCAGGTACAAACAAGGCAG 779
consensus_3866#1 ------------------------------------------------------------
consensus_3866#0 GCCGCAAACAAGCAGAAATGAAGATGCAAGCTCACAGGGAAGTGCGCTAATTGACGAGGA 839
consensus_3866#1 ------------------------------------------------------------
consensus_3866#0 TATTGAACCACATGGTGAAAAGGAAGTATCGGATGATCCTGAGCGGTTAATTGACGCGGA 899
consensus_3866#1 ------------------------------------------------------------
consensus_3866#0 GAAGTCACCACATGTACCTGATAATAACAAAGCTGAACGCAAACCATTAGCAGACAGGAT 959
consensus_3866#1 ------------------------------------------------------------
consensus_3866#0 TCGTGTTCTTGTTGCTTATGATGATCTATTTGAAGAGGGAGAGATACACGAAGGGGATGC 1019
consensus_3866#1 ------------------------------------------------------------
consensus_3866#0 GCCATGAAGTATTTCGAAAGTCTTGCCCTTTCAACCCCTCTTGAGCGTTAATTCTTGAAG 1079
consensus_3866#1 ------------------------------------------------------------
consensus_3866#0 CAAACATCACCGAATGGGAAAAAGGGCATGTGTATTAATCGACATTACAGTGAGGCAATT 1139
consensus_3866#1 ------------------------------------------------------------
consensus_3866#0 CTTTTTCCAATTTTGCCTTTATATGTGCCTGATTGGGCAGTAAGGCAGCGGATGAGTTTT 1199
consensus_3866#1 ------------------------------------------------------------
consensus_3866#0 TTGTTGAGAGCAGTGAGCTGAAACAAACTCAATATTAATGGAAAG 1244
consensus_3866#1 ---------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||