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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3879#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2236 fasta sequence
[CCGCCTGCCTCTCTCCGCTGCGCGCCGCCTCTTTCCAATTCCACCTCGCCGCTTCTCCTCTCCTCTCAATCTCTCATCCCTCCCTTGTCGTACCGCATCCGCATCAGCACCACCATCTCCTCTCCGCGGCGGCGCCGCATTTCCTTCCCTCGCCGACCGCCACCACCAGCGGCTCCGCTTGCTCTTCAAATGACTCTTGACATCAGGAAGGATTATCTCTGTTTTCCTTGCTGTGGATGCTCAATAATATGCCAAATTCTTAGGCCAAGGTCTATTTGGATCTCGTTATGCTAGTATAGACAACGTTCCATTCTCCTTAGTATGGCCAAGACATCTCTTCCTCCTGGATTCCGGTTTCATCCAACAGATGTTGAGTTGACTGTCTATTACCTGAAGAGAAAATTATTGGGCAAACACTTACGGTGCAATGCTGTTTCAGAGCTTGATCTATACAAATTTGCCCCTTGGGATCTTCCAGAGAAATCTTCGTTGCAGAGTAAGGATCGAGAATGGTATTTCTTTTGCCCACGTGATAGGAAATATTCTAGTGGGTCAAGAACGAACCGATCAACTGAAGCTGGGTATTGGAAAGCTACTGGAAAAGACAGACCAGTAATATATAATTCTCAGACTGTTGGGATGAAGCGAACTTTGGTGTTTCATCTTGGCAAGCCACCTCGGGGTGATAGAACTGATTGGGTAATGTATGAATACAGGCTGGAGGACAAGGAACTGTCTGCTTCTGGTGTTAAACTGGATGCTTGTGTTCTCTGCAAAATCTTTCAAAAAAGTGGTCCAGGTCCCAAGATTGGGGAACAGTATGGTGCTCCATTCAATGAAGATGATTGGAATGAAGCGAACGGGGAGCTATCCTCTTTTGCCTTTTCTGTGCCCCCTTGTGCGCTGGAATCAAGTAATGGCAGGTTAAACACAGCTGGTCAGCAGCTGGCTGTTAGTGATAATATTGGATCTTCTTTGGACCATTGTTCAGAAACTAATGACAAGATCGCTGTTGGTGGCTGTGGGACGACTAGTCCTAGCGTTCCTTTTGATACCATACATACCCAGCAGCTAGATGAGATTATCAGTTGTTTCTCGACAGATCTTTTGAACTCCGTTAGTCGAGATGGTTCATTGCCTGACTCAACTGCTGACTATGATAATGACAATGAAGTATCGTCCGATGATGGTGAAGCAATATTTAATGAACTTGATGAACTTGATTCCCAATCAGATGAGAGCATTTCCAACCATTGTAACTCATGTGGTGAAGACTTGATTCCTCCTACGCTGGAAGTACTTAAAACTGAACAGTACTTGGAGCTGAATGACTTGTCCTTTTCTCTTGCCGATGATCCTGATCCATGTAACCTGCTGCTGACAACTAATCTATCTGATCAGAACCATCCAGAATTAGAGACCAGGTTTGAGCAGGGGTCTCTTGTTGACATCTGCAATACCACTAATGCTACCATATCCAATGCTGCCTGTTCAGCGTCAACAGTTGGTGATCATGTGACCTGAATCACAGGTATGGCTCCTATACCTATAGCCTGAACCAGACGGGGGTTCGTTCGCTCGCTGTTACTTGAGGCATGTCATGGTTCTTCTGTTTCCTGTTTATTGAAGTGCATTTTACAGCTCAAACAGGAAGGCGCTCAGATTATGAGATTGGGAGTTGCAGCTAGTTTGCGAAGATTCAGTTTGGGCCAATTCAGGAGAATTCGTGGTTCATGGACATTTCGCTTACCCTAGTTTGCGAAGAAGATTTTGTCACCAATAAGGGATCGGTACGAATAACTCGTTGGCGACGTTGGATCACTTGTCCTTAAAAAGATGTTGGAAGCCTGATTCTGGAGCGGACAGCCTTACATTCCTGGTGATCCCCTGAGCTTGTGTGGTGCTTACTGCCGTCCAAATTAGTACTCCTAGGCAGCTAGTAGGAATTTCCTCTTTTTTTTTCCTGTTTTACCTGTACGAGCGGTCTGTCTGATCATCTGATGTATGCTAACGTCAATAGCGAGTTACGCAGCAGCGTAGTACAAAGCTCAACTATTAGGCTAGATTAGAGAGAGACGGCGATGGTGACTTTTCGCAACGAACCTAGATTGAACATGTTGCAAACTAAATGTTGGCACAGCTAAATATTCTTAAAACCAACGACTAAATGTAATATGCGCAAATCTTTGACCATACCCATACGTTGCAGATGCAATTAATTAATGAAACCTTACAT]
[+] EMBL AK068153 [CCGCCTGCCTCTCTCCGCTGCGCGCCGCCTCTTTCCAATTCCACCTCGCCGCTTCTCCTCTCCTCTCAATCTCTCATCCCTCCCTTGTCGTACCGCATCCGCATCAGCACCACCATCTCCTCTCCGCGGCGGCGCCGCATTTCCTTCCCTCGCCGACCGCCACCACCAGCGGCTCCGCTTGCTCTTCAAATGACTCTTGACATCAGGAAGGATTATCTCTGTTTTCCTTGCTGTGGATGCTCAATAATATGCCAAATTCTTAGGCCAAGGTCTATTTGGATCTCGTTATGCTAGTATAGACAACGTTCCATTCTCCTTAGTATGGCCAAGACATCTCTTCCTCCTGGATTCCGGTTTCATCCAACAGATGTTGAGTTGACTGTCTATTACCTGAAGAGAAAATTATTGGGCAAACACTTACGGTGCAATGCTGTTTCAGAGCTTGATCTATACAAATTTGCCCCTTGGGATCTTCCAGAGAAATCTTCGTTGCAGAGTAAGGATCGAGAATGGTATTTCTTTTGCCCACGTGATAGGAAATATTCTAGTGGGTCAAGAACGAACCGATCAACTGAAGCTGGGTATTGGAAAGCTACTGGAAAAGACAGACCAGTAATATATAATTCTCAGACTGTTGGGATGAAGCGAACTTTGGTGTTTCATCTTGGCAAGCCACCTCGGGGTGATAGAACTGATTGGGTAATGTATGAATACAGGCTGGAGGACAAGGAACTGTCTGCTTCTGGTGTTAAACTGGATGCTTGTGTTCTCTGCAAAATCTTTCAAAAAAGTGGTCCAGGTCCCAAGATTGGGGAACAGTATGGTGCTCCATTCAATGAAGATGATTGGAATGAAGCGAACGGGGAGCTATCCTCTTTTGCCTTTTCTGTGCCCCCTTGTGCGCTGGAATCAAGTAATGGCAGGTTAAACACAGCTGGTCAGCAGCTGGCTGTTAGTGATAATATTGGATCTTCTTTGGACCATTGTTCAGAAACTAATGACAAGATCGCTGTTGGTGGCTGTGGGACGACTAGTCCTAGCGTTCCTTTTGATACCATACATACCCAGCAGCTAGATGAGATTATCAGTTGTTTCTCGACAGATCTTTTGAACTCCGTTAGTCGAGATGGTTCATTGCCTGACTCAACTGCTGACTATGATAATGACAATGAAGTATCGTCCGATGATGGTGAAGCAATATTTAATGAACTTGATGAACTTGATTCCCAATCAGATGAGAGCATTTCCAACCATTGTAACTCATGTGGTGAAGACTTGATTCCTCCTACGCTGGAAGTACTTAAAACTGAACAGTACTTGGAGCTGAATGACTTGTCCTTTTCTCTTGCCGATGATCCTGATCCATGTAACCTGCTGCTGACAACTAATCTATCTGATCAGAACCATCCAGAATTAGAGACCAGGTTTGAGCAGGGGTCTCTTGTTGACATCTGCAATACCACTAATGCTACCATATCCAATGCTGCCTGTTCAGCGTCAACAGTTGGTGATCATGTGACCTGAATCACAGGTATGGCTCCTATACCTATAGCCTGAACCAGACGGGGGTTCGTTCGCTCGCTGTTACTTGAGGCATGTCATGGTTCTTCTGTTTCCTGTTTATTGAAGTGCATTTTACAGCTCAAACAGGAAGGCGCTCAGATTATGAGATTGGGAGTTGCAGCTAGTTTGCGAAGATTCAGTTTGGGCCAATTCAGGAGAATTCGTGGTTCATGGACATTTCGCTTACCCTAGTTTGCGAAGAAGATTTTGTCACCAATAAGGGATCGGTACGAATAACTCGTTGGCGACGTTGGATCACTTGTCCTTAAAAAGATGTTGGAAGCCTGATTCTGGAGCGGACAGCCTTACATTCCTGGTGATCCCCTGAGCTTGTGTGGTGCTTACTGCCGTCCAAATTAGTACTCCTAGGCAGCTAGTAGGAATTTCCTCTTTTTTTTTCCTGTTTTACCTGTACGAGCGGTCTGTCTGATCATCTGATGTATGCTAACGTCAATAGCGAGTTACGCAGCAGCGTAGTACAAAGCTCAACTATTAGGCTAGATTAGAGAGAGACGGCGATGGTGACTTTTCGCAACGAACCTAGATTGAACATGTTGCAAACTAAATGTTGGCACAGCTAAATATTCTTAAAACCAACGACTAAATGTAATATGCGCAAATCTTTGACCATACCCATACGTTGCAGATGCAATTAATTAATGAAACCTTACAT]
consensusID : consensus_3879#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence
[AAATGTACTACTATTCTATCTATCTAACTGCAACCGTTTTTTTTTATTTCTTTAGTTCTTAGGCCAAGGTCTATTTGGATCTCGTTATGCTAGTATAGACAACGTTCCATTCTCCTTAGTATGGCCAAGACATCTCTTTTTCTCTGGATTCCGGTTTCATCCAACAGATGTTGAGTTGACTGTCTATTACCTGAAGAGAAAATTATTGGGCAAACACTTACGGTGCAATGCTGTTTCAGAGCTTGATCTATACAAATTTGCCCCTTGGGATCTTCCAGAGAAATCTTCGTTGCAGAGTAAGGATCGAGAATGGTATTTCTTTTGCCCACGTGATAGGAAATATTCTAGTGGGTCAAGAACGAACCGATCAACTGAAGCTGGGTATTGGAAAGCTACTGGAAAAGACAGACCAGTAATATATAATTCTCAGAC]
[+] EMBL CF305580 [AAATGTACTACTATTCTATCTATCTAACTGCAACCGTTTTTTTTTATTTCTTTAGTTCTTAGGCCAAGGTCTATTTGGATCTCGTTATGCTAGTATAGACAACGTTCCATTCTCCTTAGTATGGCCAAGACATCTCTTTTTCTCTGGATTCCGGTTTCATCCAACAGATGTTGAGTTGACTGTCTATTACCTGAAGAGAAAATTATTGGGCAAACACTTACGGTGCAATGCTGTTTCAGAGCTTGATCTATACAAATTTGCCCCTTGGGATCTTCCAGAGAAATCTTCGTTGCAGAGTAAGGATCGAGAATGGTATTTCTTTTGCCCACGTGATAGGAAATATTCTAGTGGGTCAAGAACGAACCGATCAACTGAAGCTGGGTATTGGAAAGCTACTGGAAAAGACAGACCAGTAATATATAATTCTCAGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3879#0 CCGCCTGCCTCTCTCCGCTGCGCGCCGCCTCTTTCCAATTCCACCTCGCCGCTTCTCCTC 60
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 TCCTCTCAATCTCTCATCCCTCCCTTGTCGTACCGCATCCGCATCAGCACCACCATCTCC 120
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 TCTCCGCGGCGGCGCCGCATTTCCTTCCCTCGCCGACCGCCACCACCAGCGGCTCCGCTT 180
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 GCTCTTCAAATGACTCTTGACATCAGGAAGGATTATCTCTGTTTTCCTTGCTGTGGATGC 240
consensus_3879#1 ----------------------AAATGTACTACTAT-TCTATCTATCTAACTGCAACCGT 37
* * * * *** *** * * ** *** *
consensus_3879#0 TCAATAATATGCCA--AATTCTTAGGCCAAGGTCTATTTGGATCTCGTTATGCTAGTATA 298
consensus_3879#1 TTTTTTTTATTTCTTTAGTTCTTAGGCCAAGGTCTATTTGGATCTCGTTATGCTAGTATA 97
* * *** * * ******************************************
consensus_3879#0 GACAACGTTCCATTCTCCTTAGTATGGCCAAGACATCTCTTCCTC-CTGGATTCCGGTTT 357
consensus_3879#1 GACAACGTTCCATTCTCCTTAGTATGGCCAAGACATCTCTTTTTCTCTGGATTCCGGTTT 157
***************************************** ** **************
consensus_3879#0 CATCCAACAGATGTTGAGTTGACTGTCTATTACCTGAAGAGAAAATTATTGGGCAAACAC 417
consensus_3879#1 CATCCAACAGATGTTGAGTTGACTGTCTATTACCTGAAGAGAAAATTATTGGGCAAACAC 217
************************************************************
consensus_3879#0 TTACGGTGCAATGCTGTTTCAGAGCTTGATCTATACAAATTTGCCCCTTGGGATCTTCCA 477
consensus_3879#1 TTACGGTGCAATGCTGTTTCAGAGCTTGATCTATACAAATTTGCCCCTTGGGATCTTCCA 277
************************************************************
consensus_3879#0 GAGAAATCTTCGTTGCAGAGTAAGGATCGAGAATGGTATTTCTTTTGCCCACGTGATAGG 537
consensus_3879#1 GAGAAATCTTCGTTGCAGAGTAAGGATCGAGAATGGTATTTCTTTTGCCCACGTGATAGG 337
************************************************************
consensus_3879#0 AAATATTCTAGTGGGTCAAGAACGAACCGATCAACTGAAGCTGGGTATTGGAAAGCTACT 597
consensus_3879#1 AAATATTCTAGTGGGTCAAGAACGAACCGATCAACTGAAGCTGGGTATTGGAAAGCTACT 397
************************************************************
consensus_3879#0 GGAAAAGACAGACCAGTAATATATAATTCTCAGACTGTTGGGATGAAGCGAACTTTGGTG 657
consensus_3879#1 GGAAAAGACAGACCAGTAATATATAATTCTCAGAC------------------------- 432
***********************************
consensus_3879#0 TTTCATCTTGGCAAGCCACCTCGGGGTGATAGAACTGATTGGGTAATGTATGAATACAGG 717
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 CTGGAGGACAAGGAACTGTCTGCTTCTGGTGTTAAACTGGATGCTTGTGTTCTCTGCAAA 777
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 ATCTTTCAAAAAAGTGGTCCAGGTCCCAAGATTGGGGAACAGTATGGTGCTCCATTCAAT 837
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 GAAGATGATTGGAATGAAGCGAACGGGGAGCTATCCTCTTTTGCCTTTTCTGTGCCCCCT 897
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 TGTGCGCTGGAATCAAGTAATGGCAGGTTAAACACAGCTGGTCAGCAGCTGGCTGTTAGT 957
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 GATAATATTGGATCTTCTTTGGACCATTGTTCAGAAACTAATGACAAGATCGCTGTTGGT 1017
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 GGCTGTGGGACGACTAGTCCTAGCGTTCCTTTTGATACCATACATACCCAGCAGCTAGAT 1077
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 GAGATTATCAGTTGTTTCTCGACAGATCTTTTGAACTCCGTTAGTCGAGATGGTTCATTG 1137
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 CCTGACTCAACTGCTGACTATGATAATGACAATGAAGTATCGTCCGATGATGGTGAAGCA 1197
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 ATATTTAATGAACTTGATGAACTTGATTCCCAATCAGATGAGAGCATTTCCAACCATTGT 1257
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 AACTCATGTGGTGAAGACTTGATTCCTCCTACGCTGGAAGTACTTAAAACTGAACAGTAC 1317
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 TTGGAGCTGAATGACTTGTCCTTTTCTCTTGCCGATGATCCTGATCCATGTAACCTGCTG 1377
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 CTGACAACTAATCTATCTGATCAGAACCATCCAGAATTAGAGACCAGGTTTGAGCAGGGG 1437
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 TCTCTTGTTGACATCTGCAATACCACTAATGCTACCATATCCAATGCTGCCTGTTCAGCG 1497
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 TCAACAGTTGGTGATCATGTGACCTGAATCACAGGTATGGCTCCTATACCTATAGCCTGA 1557
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 ACCAGACGGGGGTTCGTTCGCTCGCTGTTACTTGAGGCATGTCATGGTTCTTCTGTTTCC 1617
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 TGTTTATTGAAGTGCATTTTACAGCTCAAACAGGAAGGCGCTCAGATTATGAGATTGGGA 1677
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 GTTGCAGCTAGTTTGCGAAGATTCAGTTTGGGCCAATTCAGGAGAATTCGTGGTTCATGG 1737
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 ACATTTCGCTTACCCTAGTTTGCGAAGAAGATTTTGTCACCAATAAGGGATCGGTACGAA 1797
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 TAACTCGTTGGCGACGTTGGATCACTTGTCCTTAAAAAGATGTTGGAAGCCTGATTCTGG 1857
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 AGCGGACAGCCTTACATTCCTGGTGATCCCCTGAGCTTGTGTGGTGCTTACTGCCGTCCA 1917
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 AATTAGTACTCCTAGGCAGCTAGTAGGAATTTCCTCTTTTTTTTTCCTGTTTTACCTGTA 1977
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 CGAGCGGTCTGTCTGATCATCTGATGTATGCTAACGTCAATAGCGAGTTACGCAGCAGCG 2037
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 TAGTACAAAGCTCAACTATTAGGCTAGATTAGAGAGAGACGGCGATGGTGACTTTTCGCA 2097
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 ACGAACCTAGATTGAACATGTTGCAAACTAAATGTTGGCACAGCTAAATATTCTTAAAAC 2157
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 CAACGACTAAATGTAATATGCGCAAATCTTTGACCATACCCATACGTTGCAGATGCAATT 2217
consensus_3879#1 ------------------------------------------------------------
consensus_3879#0 AATTAATGAAACCTTACAT 2236
consensus_3879#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||