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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3919#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2151 fasta sequence
[CAGTACACACAGTGCGTTTCCATTTTGTTCTTTCTTCCAACACTTTGGGAGAGAGCTATACCACGTTGCTCTCTCTTGCTTTGCTTGATTTGCGTATCATAATCTTTTTATAATTCGTGCTGTTTAAAATTTTAATTAGGAGGTGAATTAAAAGCCGTCCTCGTACGTACATAAATTAGCTGGCGAATCTGGCCAGTCTTTAATTCTGCCATATATGTGCATGTGTGTGTACATGTATGGAAGGATAGTATTCTCTCCTTAATTTCTTGAATTGCTATCCGATCCTGAGCAATATATGTCCCTAGCTAGCTAGCTGGGCGTCCGCCATAATTTGCTGCCAATAATAATTAGCCCCATATATCCTTGTAGCTAGGTGAATCATCCCCTTGATATGCCTTGTTAAATATGTAGCTCCGATTTAAGCTCTCTTGCCCA-TTTTTTTTCAGAGTTTATAGTTTCATTTTGATTCTTCCGCTCTCTGCTAGCTTCCACACACCAAGTTCATCAGCCAATTTCTTCCTGACGAGAAGGCCGTGTAAGAATTTTAGTGAAGTGAGTGTCTTTTTTGTTTTTCGATTGGTCGATCGAGTGCTGGTACAAGCTAGAGGATGGCGATGATGGAGAGGATTGAGGTCACCAAGCTTCATCATCATCTTCTTCTTCTTGTTCTTCTTCTCGTCGTCGCCGCCGCCGGCGGCGGCAGCGTACAGGCGGCGGAGGAGGATGAGATGAGCGGCCGGAGGAGGAGAAGCAGGCGGCGGCGTGCGGCGGACGTGATGGTGCCCATCACCATCCTCAACTCCGCCGTCGACAAGGGAGCCGTGTGCATGGACGGGACGCCGCCGGCGTACCACCTGGACCCGGGCTCCGGCGGCGGCAACCGGAGCTGGGTGGTCAACCTGGAGGGCGGCGGGTGGTGCAACAACGCCCGCACGCGCCGCTTCCGCACCGCCAGCCGCCACGGCTCCTCCGACCACATGGAGCGCCGCATCGCCTTCACCGGCATCATGAGCTCCGCCGCCGCCGACAACCCCGATTTCCACAGCTGGAACCGCGTCAAGATCCGCTACTGCGACAGCGGGTCCTTCGCCGGCGACGCCTTCAACGAGGGATTGAAGCTGCAATTCCGGGGGCAGCGCATCTGGGGGGCGGTGATCCAGCACCTGCTCGACGTCGGCATGGCCTCCGCCGAGCATGTGCTGCTCACCGGCTGCTCCGCCGGCGGCCTCGCCGCGATCCTCCACTGCGACCAGCTCCGCGCCCTCCTCCCCGCCGCCGCCACCGTCAAGTGCCTCTCCGACGGCGGCCTCTTCCTCGACGCCGTGGACGTCGCCGGCGGCAGGAGCCTGAGGTCATACTACGGCGACGTCGTCGGCCTGCAGGCGGTGGCGCCCAACCTTCCCGAGACCTGCACCGACCATCTCGACGCCACCTCGTGCTTCTTCCCTCAGAACATAATCGACGGCATAAAGACACCCATCTTCCTGCTGAATGCGGCGTACGACGTCTGGCAGATCGAGCAGAGCCTGGCCCCTAACGCAGCTGACACCAGCGGCACCTGGCGAGTCTGCAAGTTCAACCGCGCAGCCTGCAACGCGTCTCAGCTGCAGTTCCTGCAAGGTTTCAGAGATCAGATGGTGGCAGCGGTGAGAGTCTTCTCCGAGTCGAGGAGCAACGGGCTGTTCATCAACTCGTGCTTCGCTCACTGCCAGTCCGAGCTGACGGCCACCTGGAATGGTGGCTCTCCTGCTCTCCAGAACAAGGGAATTGCAAAGTCTGTTGGTGACTGGTACTTTGGTCGAGCTGAGGTGAAGGCCATCGATTGCCCCTACCCCTGTGACAAAACATGCCACAACATCATATGACATCATGCACTGACGTTTACTCGCCTCGACCGAATGGAGTGACACACATTTTTGCCTCGAAGTCCTCTCAAGTTCTTCACTCTAGCTAGTAGCTATATACATGTAGAACTATCGAGTTCAGAGCCAAAACATACAAAACAGAGAACCTCACACAAACAGATACAAAGGAAGCAAAACAAAGTTAACAAAAGCAAATAGGAAGGGGGAGAGGGGCAGGGCACATTAATATCGGGAAGCAGTGTGGTGGAGTCATGGGTGTATAATTTCACCTATTAAGAATAAATTA]
[+] EMBL AK107088 [CAGTACACACAGTGCGTTTCCATTTTGTTCTTTCTTCCAACACTTTGGGAGAGAGCTATACCACGTTGCTCTCTCTTGCTTTGCTTGATTTGCGTATCATAATCTTTTTATAATTCGTGCTGTTTAAAATTTTAATTAGGAGGTGAATTAAAAGCCGTCCTCGTACGTACATAAATTAGCTGGCGAATCTGGCCAGTCTTTAATTCTGCCATATATGTGCATGTGTGTGTACATGTATGGAAGGATAGTATTCTCTCCTTAATTTCTTGAATTGCTATCCGATCCTGAGCAATATATGTCCCTAGCTAGCTAGCTGGGCGTCCGCCATAATTTGCTGCCAATAATAATTAGCCCCATATATCCTTGTAGCTAGGTGAATCATCCCCTTGATATGCCTTGTTAAATATGTAGCTCCGATTTAAGCTCTCTTGCCCA TTTTTTTTCAGAGTTTATAGTTTCATTTTGATTCTTCCGCTCTCTGCTAGCTTCCACACACCAAGTTCATCAGCCAATTTCTTCCTGACGAGAAGGCCGTGTAAGAATTTTAGTGAAGTGAGTGTCTTTTTTGTTTTTCGATTGGTCGATCGAGTGCTGGTACAAGCTAGAGGATGGCGATGATGGAGAGGATTGAGGTCACCAAGCTTCATCATCATCTTCTTCTTCTTGTTCTTCTTCTCGTCGTCGCCGCCGCCGGCGGCGGCAGCGTACAGGCGGCGGAGGAGGATGAGATGAGCGGCCGGAGGAGGAGAAGCAGGCGGCGGCGTGCGGCGGACGTGATGGTGCCCATCACCATCCTCAACTCCGCCGTCGACAAGGGAGCCGTGTGCATGGACGGGACGCCGCCGGCGTACCACCTGGACCCGGGCTCCGGCGGCGGCAACCGGAGCTGGGTGGTCAACCTGGAGGGCGGCGGGTGGTGCAACAACGCCCGCACGCGCCGCTTCCGCACCGCCAGCCGCCACGGCTCCTCCGACCACATGGAGCGCCGCATCGCCTTCACCGGCATCATGAGCTCCGCCGCCGCCGACAACCCCGATTTCCACAGCTGGAACCGCGTCAAGATCCGCTACTGCGACAGCGGGTCCTTCGCCGGCGACGCCTTCAACGAGGGATTGAAGCTGCAATTCCGGGGGCAGCGCATCTGGGGGGCGGTGATCCAGCACCTGCTCGACGTCGGCATGGCCTCCGCCGAGCATGTGCTGCTCACCGGCTGCTCCGCCGGCGGCCTCGCCGCGATCCTCCACTGCGACCAGCTCCGCGCCCTCCTCCCCGCCGCCGCCACCGTCAAGTGCCTCTCCGACGGCGGCCTCTTCCTCGACGCCGTGGACGTCGCCGGCGGCAGGAGCCTGAGGTCATACTACGGCGACGTCGTCGGCCTGCAGGCGGTGGCGCCCAACCTTCCCGAGACCTGCACCGACCATCTCGACGCCACCTCGTGCTTCTTCCCTCAGAACATAATCGACGGCATAAAGACACCCATCTTCCTGCTGAATGCGGCGTACGACGTCTGGCAGATCGAGCAGAGCCTGGCCCCTAACGCAGCTGACACCAGCGGCACCTGGCGAGTCTGCAAGTTCAACCGCGCAGCCTGCAACGCGTCTCAGCTGCAGTTCCTGCAAGGTTTCAGAGATCAGATGGTGGCAGCGGTGAGAGTCTTCTCCGAGTCGAGGAGCAACGGGCTGTTCATCAACTCGTGCTTCGCTCACTGCCAGTCCGAGCTGACGGCCACCTGGAATGGTGGCTCTCCTGCTCTCCAGAACAAGGGAATTGCAAAGTCTGTTGGTGACTGGTACTTTGGTCGAGCTGAGGTGAAGGCCATCGATTGCCCCTACCCCTGTGACAAAACATGCCACAACATCATATGACATCATGCACTGACGTTTACTCGCCTCGACCGAATGGAGTGACACACATTTTTGCCTCGAAGTCCTCTCAAGTTCTTCACTCTAGCTAGTAGCTATATACATGTAGAACTATCGAGTTCAGAGCCAAAACATACAAAACAGAGAACCTCACACAAACAGATACAAAGGAAGCAAAACAAAGTTAACAAAAGCAAATAGGAAGGGGGAGAGGGGCAGGGCACATTAATATCGGGAAGCAGTGTGGTGGAGTCATGGGTGTATAATTTCACCTATTAAGAATAAATTA]
[+] EMBL AK067689 [ CTTAATTTCTTGAATTGCTATCCGATCTTGAGCAATATATGTCCCTAGCTAGCTAGCTGGGCGTCCGCCATAATTTGCTGCCAATAATAATTAGCCCCATATATCCTTGTAGCTAGGTGAATCATCCCCTTGATATGCCTTGTTAAATATGTAGCTCCGATTTAAGCTCTCTTGCCCATTTTTTTTTCAGAGTTTATAGTTTCATTTTGATTCTTCCGCTCTCTGCTAGCTTC CACACCAAGTTCATCAGCCAATTTCTTCCTGACGAGAAGGCCGTGTAAGAATTTTAGTGAAGTGAGTGTCTTTTTTGTTTTTCGATTGGTCGATCGAGTGCTGGTACAAGCTAGAGGATGGCGATGATGGAGAGGATTGGGGTCACCAAGCTTCATCATCATCTTCTTCTTCTTGTTCTTCTTCTCGTCGTCGCCGCCGCCGGCGGCGGCAGCGTACAGGCGGCGGAGGAGGATGAGATGAGCGGCCGGAGGAGGAGAAGCAGGCGGCGGCGTGCGGCGGACGTGATGGTGCCCATCACCATCCTCAACTCCGCCGTCGACAAGGGAGCCGTGTGCATGGACGGGACGCCGCCGGCGTACCACCTGGACCCGGGCTCCGGCGGCGGCAACCGGAGCTGGGTGGTCAACCTGGAGGGCGGCGGGTGGTGCAACAACGCCCGCACGTGCCGCTTCCGCACCGCCAGCCGCCACGGCTCCTCCGACCACATGGAGCGCCGCATCGCCTTCACCGGCATCATGAGCTCAGCCGCCGCCGACAACCCCGATTTCCACAGCTGGAACCGCGTCAAGATCCGCTACTGCGACAGCGGGTCCTTCGCCGGCGACGCCTTCAACGAGGGATTGAAGCTGCAATTCCGGGGGCAGCGCATCTGGGGGGCGGTGATCCAGCACCTGCTCGACGTCGGCATGGCCTCCGCCGAGCATGTGCTGCTCACCGGCTGCTCCGCCGGCGGCCTCACCGCGATCCTCCACTGCGACCAGCTCCGCGCCCTCCTCCCCGCCGCCGCCACCGTCAAGTGCCTCTCCGACGGCGGCCTCTTCCTCGACGCCGTGGACGTCGCCGGCGGCAGGAGCCTGAGGTCATACTACGGCGACGTCGTCGGCCTGCAGGCGGTGGCGCCCAACCTTCCCGAGACCTGCACCGACCATCTCGACGCCACCTCGTGCTTCTTCCCTCAGAACATAATCGACGGCATAAAGACACCCATCTTCCTGCTGAATGCGGCGTACGACGTCTGGCAGATCGAGCAGAGCCTGGCCCCTAACGCAGCTGACACCAGCGGCACCTGGCGAGTCTGCAAGTTCAACCGCGCAGCCTGCAACGCGTCTCAGCTGCAGTTCCTGCAAGGTTTCAGAGATCAGATGGTGGCAGCGGTGAGAGTCTTCTCCGAGTCGAGGAACAACGGGCTGTTCATCAACTCGTGCTTCGCTCACTGCCAGTCCGAGCTGACGGCCACCTGGAATGGTGGCTCTCCTGCTCTCCAGAACAAGGGAATTGCAAAGTCTGTTGGTGACTGGTACTTTGGTCGAGCTGAGGTGAAGGCCATCGATTGCCCCTACCCCTGTGACAAAACATGCCACAACATCATATGACATCATGTACTGACGTTTACTCGTCTCGACCGAATGGAGTGACACACAT ]
consensusID : consensus_3919#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence
[ACGCGTCTCACTCCAGTTCCTGCAAGGTTTCAGAGATCAGATGGTGCACGGTGAGAGTCTTCTCCGAGTCGAGGAGCAACGGGCTGTTCATCAACTCGTGCTTCGCTCACTGCCAGTCCGAGCTGACGGCCACCTGGAATGGTGGCTCTCCTGTGACAAACATGCCACAACATCATATGACATCATGTACTGACGTTTACTCGTCTCGACCGAATGGAGTGACACACATTTTTGCCTCGAAGTCCTCTCAAGTTCTTCACTCTAGCTAGTAGCTATATACATGTAGAACTATCGAGTTCAGAGCCAAAACATACAAACAGAGAACCTCACACAACAGATACAAAGGAAGCAAAACAAAGTTAACAAAGCAAATAGGAAGGGGGAGAGGGGCCAGGGCACATTAATATCGGGAAGCAGTGTGGTGGAGTCATGGGTGTATAATTTCACCTATTAAGAATAAATTACAGTATTCACAAAAA]
[+] EMBL BI811422 [ACGCGTCTCACTCCAGTTCCTGCAAGGTTTCAGAGATCAGATGGTGCACGGTGAGAGTCTTCTCCGAGTCGAGGAGCAACGGGCTGTTCATCAACTCGTGCTTCGCTCACTGCCAGTCCGAGCTGACGGCCACCTGGAATGGTGGCTCTCCTGTGACAAACATGCCACAACATCATATGACATCATGTACTGACGTTTACTCGTCTCGACCGAATGGAGTGACACACATTTTTGCCTCGAAGTCCTCTCAAGTTCTTCACTCTAGCTAGTAGCTATATACATGTAGAACTATCGAGTTCAGAGCCAAAACATACAAACAGAGAACCTCACACAACAGATACAAAGGAAGCAAAACAAAGTTAACAAAGCAAATAGGAAGGGGGAGAGGGGCCAGGGCACATTAATATCGGGAAGCAGTGTGGTGGAGTCATGGGTGTATAATTTCACCTATTAAGAATAAATTACAGTATTCACAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3919#0 CAGTACACACAGTGCGTTTCCATTTTGTTCTTTCTTCCAACACTTTGGGAGAGAGCTATA 60
consensus_3919#1 ------------------------------------------------------------
consensus_3919#0 CCACGTTGCTCTCTCTTGCTTTGCTTGATTTGCGTATCATAATCTTTTTATAATTCGTGC 120
consensus_3919#1 ------------------------------------------------------------
consensus_3919#0 TGTTTAAAATTTTAATTAGGAGGTGAATTAAAAGCCGTCCTCGTACGTACATAAATTAGC 180
consensus_3919#1 ------------------------------------------------------------
consensus_3919#0 TGGCGAATCTGGCCAGTCTTTAATTCTGCCATATATGTGCATGTGTGTGTACATGTATGG 240
consensus_3919#1 ------------------------------------------------------------
consensus_3919#0 AAGGATAGTATTCTCTCCTTAATTTCTTGAATTGCTATCCGATCCTGAGCAATATATGTC 300
consensus_3919#1 ------------------------------------------------------------
consensus_3919#0 CCTAGCTAGCTAGCTGGGCGTCCGCCATAATTTGCTGCCAATAATAATTAGCCCCATATA 360
consensus_3919#1 ------------------------------------------------------------
consensus_3919#0 TCCTTGTAGCTAGGTGAATCATCCCCTTGATATGCCTTGTTAAATATGTAGCTCCGATTT 420
consensus_3919#1 ------------------------------------------------------------
consensus_3919#0 AAGCTCTCTTGCCCATTTTTTTTCAGAGTTTATAGTTTCATTTTGATTCTTCCGCTCTCT 480
consensus_3919#1 ------------------------------------------------------------
consensus_3919#0 GCTAGCTTCCACACACCAAGTTCATCAGCCAATTTCTTCCTGACGAGAAGGCCGTGTAAG 540
consensus_3919#1 ------------------------------------------------------------
consensus_3919#0 AATTTTAGTGAAGTGAGTGTCTTTTTTGTTTTTCGATTGGTCGATCGAGTGCTGGTACAA 600
consensus_3919#1 ------------------------------------------------------------
consensus_3919#0 GCTAGAGGATGGCGATGATGGAGAGGATTGAGGTCACCAAGCTTCATCATCATCTTCTTC 660
consensus_3919#1 ------------------------------------------------------------
consensus_3919#0 TTCTTGTTCTTCTTCTCGTCGTCGCCGCCGCCGGCGGCGGCAGCGTACAGGCGGCGGAGG 720
consensus_3919#1 ------------------------------------------------------------
consensus_3919#0 AGGATGAGATGAGCGGCCGGAGGAGGAGAAGCAGGCGGCGGCGTGCGGCGGACGTGATGG 780
consensus_3919#1 ------------------------------------------------------------
consensus_3919#0 TGCCCATCACCATCCTCAACTCCGCCGTCGACAAGGGAGCCGTGTGCATGGACGGGACGC 840
consensus_3919#1 ------------------------------------------------------------
consensus_3919#0 CGCCGGCGTACCACCTGGACCCGGGCTCCGGCGGCGGCAACCGGAGCTGGGTGGTCAACC 900
consensus_3919#1 ------------------------------------------------------------
consensus_3919#0 TGGAGGGCGGCGGGTGGTGCAACAACGCCCGCACGCGCCGCTTCCGCACCGCCAGCCGCC 960
consensus_3919#1 ------------------------------------------------------------
consensus_3919#0 ACGGCTCCTCCGACCACATGGAGCGCCGCATCGCCTTCACCGGCATCATGAGCTCCGCCG 1020
consensus_3919#1 ------------------------------------------------------------
consensus_3919#0 CCGCCGACAACCCCGATTTCCACAGCTGGAACCGCGTCAAGATCCGCTACTGCGACAGCG 1080
consensus_3919#1 ------------------------------------------------------------
consensus_3919#0 GGTCCTTCGCCGGCGACGCCTTCAACGAGGGATTGAAGCTGCAATTCCGGGGGCAGCGCA 1140
consensus_3919#1 ------------------------------------------------------------
consensus_3919#0 TCTGGGGGGCGGTGATCCAGCACCTGCTCGACGTCGGCATGGCCTCCGCCGAGCATGTGC 1200
consensus_3919#1 ------------------------------------------------------------
consensus_3919#0 TGCTCACCGGCTGCTCCGCCGGCGGCCTCGCCGCGATCCTCCACTGCGACCAGCTCCGCG 1260
consensus_3919#1 ------------------------------------------------------------
consensus_3919#0 CCCTCCTCCCCGCCGCCGCCACCGTCAAGTGCCTCTCCGACGGCGGCCTCTTCCTCGACG 1320
consensus_3919#1 ------------------------------------------------------------
consensus_3919#0 CCGTGGACGTCGCCGGCGGCAGGAGCCTGAGGTCATACTACGGCGACGTCGTCGGCCTGC 1380
consensus_3919#1 ------------------------------------------------------------
consensus_3919#0 AGGCGGTGGCGCCCAACCTTCCCGAGACCTGCACCGACCATCTCGACGCCACCTCGTGCT 1440
consensus_3919#1 ------------------------------------------------------------
consensus_3919#0 TCTTCCCTCAGAACATAATCGACGGCATAAAGACACCCATCTTCCTGCTGAATGCGGCGT 1500
consensus_3919#1 ------------------------------------------------------------
consensus_3919#0 ACGACGTCTGGCAGATCGAGCAGAGCCTGGCCCCTAACGCAGCTGACACCAGCGGCACCT 1560
consensus_3919#1 ------------------------------------------------------------
consensus_3919#0 GGCGAGTCTGCAAGTTCAACCGCGCAGCCTGCAACGCGTCTCAGCTGCAGTTCCTGCAAG 1620
consensus_3919#1 ---------------------------------ACGCGTCTCA-CTCCAGTTCCTGCAAG 26
********** ** *************
consensus_3919#0 GTTTCAGAGATCAGATGGTGGCAGCGGTGAGAGTCTTCTCCGAGTCGAGGAGCAACGGGC 1680
consensus_3919#1 GTTTCAGAGATCAGATGGTGC--ACGGTGAGAGTCTTCTCCGAGTCGAGGAGCAACGGGC 84
******************** ************************************
consensus_3919#0 TGTTCATCAACTCGTGCTTCGCTCACTGCCAGTCCGAGCTGACGGCCACCTGGAATGGTG 1740
consensus_3919#1 TGTTCATCAACTCGTGCTTCGCTCACTGCCAGTCCGAGCTGACGGCCACCTGGAATGGTG 144
************************************************************
consensus_3919#0 GCTCTCCTGCTCTCCAGAACAAGGGAATTGCAAAGTCTGTTGGTGACTGGTACTTTGGTC 1800
consensus_3919#1 GCTCTCCTG----------------------------------TGAC------------- 157
********* ****
consensus_3919#0 GAGCTGAGGTGAAGGCCATCGATTGCCCCTACCCCTGTGACAAAACATGCCACAACATCA 1860
consensus_3919#1 ------------------------------------------AAACATGCCACAACATCA 175
******************
consensus_3919#0 TATGACATCATGCACTGACGTTTACTCGCCTCGACCGAATGGAGTGACACACATTTTTGC 1920
consensus_3919#1 TATGACATCATGTACTGACGTTTACTCGTCTCGACCGAATGGAGTGACACACATTTTTGC 235
************ *************** *******************************
consensus_3919#0 CTCGAAGTCCTCTCAAGTTCTTCACTCTAGCTAGTAGCTATATACATGTAGAACTATCGA 1980
consensus_3919#1 CTCGAAGTCCTCTCAAGTTCTTCACTCTAGCTAGTAGCTATATACATGTAGAACTATCGA 295
************************************************************
consensus_3919#0 GTTCAGAGCCAAAACATACAAAACAGAGAACCTCACACAAACAGATACAAAGGAAGCAAA 2040
consensus_3919#1 GTTCAGAGCCAAAACATACAAA-CAGAGAACCTCACACAA-CAGATACAAAGGAAGCAAA 353
********************** ***************** *******************
consensus_3919#0 ACAAAGTTAACAAAAGCAAATAGGAAGGGGGAGAGGGGC-AGGGCACATTAATATCGGGA 2099
consensus_3919#1 ACAAAGTTAACAAA-GCAAATAGGAAGGGGGAGAGGGGCCAGGGCACATTAATATCGGGA 412
************** ************************ ********************
consensus_3919#0 AGCAGTGTGGTGGAGTCATGGGTGTATAATTTCACCTATTAAGAATAAATTA-------- 2151
consensus_3919#1 AGCAGTGTGGTGGAGTCATGGGTGTATAATTTCACCTATTAAGAATAAATTACAGTATTC 472
****************************************************
consensus_3919#0 -------
consensus_3919#1 ACAAAAA 479
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||