cluster # 3941

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Oryza sativa
cluster # 3941 cluster # 3941 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3941#0 length = 827 sequences # 2

consensus_3941#1 length = 513 sequences # 1

consensusID : consensus_3941#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 827
fasta sequence

                              [CCTTTTTTTGCGGCAAGAATCATCATTATATATAATGGAGAGCTTAGTGGTGGGTGAAAATCCACCGTAGATATGATATGATTTATCCTCGTCCAGGGGCCAAGACATGCCTAGGGCTGGTAGTGCTTAAATTCTAGGCCAAACTCTGCAATCCAATTCAGGCCCTATAAAAATACAATAGAAATTCTGAAAATATATAATGGGTAGTTAAGGGCATATTTGCTCAGCCCTAGCCGCCTTGGCTTTTCCTATGGCTCAATCCTTGTCCTCATCAATCTTGTTGAGCTTTCACCGAAGCTTCGGTAGATACTTATTATCCTGCTTGCAAGGAAATGGCACGATGCTCTCTTCTAATGTTGCATAAAAGCAAGATATTTCATTCAAAATGAAGGGAAGTGTTGTGATCAACAATCAAGCTTAAAGATGAGTGCAGGACATTCTTAATAACCTAACTAGTAAATACTACTTGACTGCAACTTCAAATCTATTTGCTTTGTAAAAAAATGCATGTACGGTTTTGAGCGCCTAGGAAAAAAAATGCATGCCCTTGTATTTAGATTGTTTATTTCAGTTAGCTAAACTTCCACTATTATCACTTCTAGACCATGGTTGAACCTCCAGGTGTTCATAATCGATGTTCCAAATAGTTAACATATGATGTTCCAGTTCCAGTGGTATCGATAGTATTTAGATTTCATTTTCAAACAATAAAACCAGAAACTTTACACCTCTAAACTACCATACTGTGTATAATGATAGTTACTTCCTAGGATGTTGTTTTTTCCTTTATTTTTAGAGGACTCCTTAAACTACCATATCTGTGCTTG]

[+] EMBL CB669507             [CCTTTTTTTGCGGCAAGAATCATCATTATATATAATGGAGAGCTTAGTGGTGGGTGAAAATCCACCGTAGATATGATATGATTTATCCTCGTCCAGGGGCCAAGACATGCCTAGGGCTGGTAGTGCTTAAATTCTAGGCCAAACTCTGCAATCCAATTCAGGCCCTATAAAAATACAATAGAAATTCTGAAAATATATAATGGGTAGTTAAGGGCATATTTGCTCAGCCCTAGCCGCCTTGGCTTTTCCTATGGCTCAATCCTTGTCCTCATCAATCTTGTTGAGCTTTCACCGAAGCTTCGGTAGATACTTATTATCCTGCTTGCAAGGAAATGGCACGATGCTCTCTTCTAATGTTGCATAAAAGCAAGATATTTCATTCAAAATGAAGGGAAGTGTTGTGATCAACAATCAAGCTTAAAGATGAGTGCAGGACATTCTTAATAACCTAACTAGTAAATACTACTTGACTGCAACTTCAAATCTATTTGCTTTGTAAAAAAATGCATGTACGGTTTTGAGCGCCTAGGAAAAAAAATGCATGCCCTTGTATTTAGATTGTTTATTTCAGTTAGCTAAACTTCCACTATTATCACTTCTAGACCATGGTTGAACCTCCAGGTGTTCATAATCGATGTTCCAAATAGTTAACATATGATGTTCCAGTTCCAGTGGTATCGATAGTATTTAGATTTCATTTTCAAACAATAAAACCAGAAACTTTACACCTCTAAACTACCATACTGTGTATAATGATAGTTACTTCCTAGGATGTTGTTTTTTCCTTTATTTTTAGAGGACTCCTTAAACTACCATATCTGTGCTTG]
[-] EMBL CF311740             [                                            aAGTGGTGGGTGAAAATCCACCGTAGATATGATATGATTTATCCTCGTCCAGGGGCCAAGACATGCCTAGGGCTGGTAGTGCTTAAATTCTAGGCCAAACTCTGCAATCCAATTCAGGCCCTATAAAAATACAATAGAAATTCTGAAAATATATAATGGGTAGTTAAGGGCATATTTGCTCAGCCCTAGCCGCCTTGGCTTTTCCTATGGCTCAATCCTTGTCCTCATCAATCTTGTTGAGCTTTCACCGAAGCTTCGGTAGATACTTATTATCCTGCTTGCAAGGAAATGGCACGATGCTCTCTTCTAATGTTGCATAAAAGCAAGATATTTCATTCAAAATGAAGGGAAGTGTTGTGATCAACAATCAAGCTTAAAGATGAGTGCAGGACATTCTTAATAACCTA                                                                                                                                                                                                                                                                                                                                                                                        ]




>consensus_3941#0
CCTTTTTTTGCGGCAAGAATCATCATTATATATAATGGAGAGCTTAGTGGTGGGTGAAAA
TCCACCGTAGATATGATATGATTTATCCTCGTCCAGGGGCCAAGACATGCCTAGGGCTGG
TAGTGCTTAAATTCTAGGCCAAACTCTGCAATCCAATTCAGGCCCTATAAAAATACAATA
GAAATTCTGAAAATATATAATGGGTAGTTAAGGGCATATTTGCTCAGCCCTAGCCGCCTT
GGCTTTTCCTATGGCTCAATCCTTGTCCTCATCAATCTTGTTGAGCTTTCACCGAAGCTT
CGGTAGATACTTATTATCCTGCTTGCAAGGAAATGGCACGATGCTCTCTTCTAATGTTGC
ATAAAAGCAAGATATTTCATTCAAAATGAAGGGAAGTGTTGTGATCAACAATCAAGCTTA
AAGATGAGTGCAGGACATTCTTAATAACCTAACTAGTAAATACTACTTGACTGCAACTTC
AAATCTATTTGCTTTGTAAAAAAATGCATGTACGGTTTTGAGCGCCTAGGAAAAAAAATG
CATGCCCTTGTATTTAGATTGTTTATTTCAGTTAGCTAAACTTCCACTATTATCACTTCT
AGACCATGGTTGAACCTCCAGGTGTTCATAATCGATGTTCCAAATAGTTAACATATGATG
TTCCAGTTCCAGTGGTATCGATAGTATTTAGATTTCATTTTCAAACAATAAAACCAGAAA
CTTTACACCTCTAAACTACCATACTGTGTATAATGATAGTTACTTCCTAGGATGTTGTTT
TTTCCTTTATTTTTAGAGGACTCCTTAAACTACCATATCTGTGCTTG

consensusID : consensus_3941#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 513
fasta sequence

                              [GAATCATCATTATATATAATGGAGAGTAAAGTGGTGGGTGAAAATCCACCGTAGATATGATATGATTTATCCTCGTCCAGGGGCCAAGACATGCCTAGGGCTGGTAGTGCTTAAATTCTAGGCCAAACTCTGTAATCCAATCCAGGCCCTATAAAAATACAATAGAAATTCTGAAAATATATAATGGGTAGTTAAGGGCATATTTGCTCAGCCCTAGCCGCCTTGGCTTTTCCTATGGCTCAATCCTTGTCCTCATCAATCTTGTTGAGCTTTCACCGAAGCTTCGGTAGATACTTATTATCCTGCTTGCAAGGAAATGGCACGATGCTCTCTTCTTCGTGATGAGAGCGAAATCCCCCGCCCAATTCTTCCGGAGAAGGAGGAAGAGAAAAAGGCGCTCACGGCGACGGCGGGGGAAGAGGTGGTTAGAACCCTTGATGCTGTCGCTTCGTCGTCGACGGGGAGCGGCGGATCGATGAGCGCGCCTCGTCCTCCGCGGCGATGGAATCCGTG]

[-] EMBL AK111070             [GAATCATCATTATATATAATGGAGAGTAAAGTGGTGGGTGAAAATCCACCGTAGATATGATATGATTTATCCTCGTCCAGGGGCCAAGACATGCCTAGGGCTGGTAGTGCTTAAATTCTAGGCCAAACTCTGTAATCCAATCCAGGCCCTATAAAAATACAATAGAAATTCTGAAAATATATAATGGGTAGTTAAGGGCATATTTGCTCAGCCCTAGCCGCCTTGGCTTTTCCTATGGCTCAATCCTTGTCCTCATCAATCTTGTTGAGCTTTCACCGAAGCTTCGGTAGATACTTATTATCCTGCTTGCAAGGAAATGGCACGATGCTCTCTTCTTCGTGATGAGAGCGAAATCCCCCGCCCAATTCTTCCGGAGAAGGAGGAAGAGAAAAAGGCGCTCACGGCGACGGCGGGGGAAGAGGTGGTTAGAACCCTTGATGCTGTCGCTTCGTCGTCGACGGGGAGCGGCGGATCGATGAGCGCGCCTCGTCCTCCGCGGCGATGGAATCCGTG]




>consensus_3941#1
GAATCATCATTATATATAATGGAGAGTAAAGTGGTGGGTGAAAATCCACCGTAGATATGA
TATGATTTATCCTCGTCCAGGGGCCAAGACATGCCTAGGGCTGGTAGTGCTTAAATTCTA
GGCCAAACTCTGTAATCCAATCCAGGCCCTATAAAAATACAATAGAAATTCTGAAAATAT
ATAATGGGTAGTTAAGGGCATATTTGCTCAGCCCTAGCCGCCTTGGCTTTTCCTATGGCT
CAATCCTTGTCCTCATCAATCTTGTTGAGCTTTCACCGAAGCTTCGGTAGATACTTATTA
TCCTGCTTGCAAGGAAATGGCACGATGCTCTCTTCTTCGTGATGAGAGCGAAATCCCCCG
CCCAATTCTTCCGGAGAAGGAGGAAGAGAAAAAGGCGCTCACGGCGACGGCGGGGGAAGA
GGTGGTTAGAACCCTTGATGCTGTCGCTTCGTCGTCGACGGGGAGCGGCGGATCGATGAG
CGCGCCTCGTCCTCCGCGGCGATGGAATCCGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3941#0      CCTTTTTTTGCGGCAAGAATCATCATTATATATAATGGAGAGCTTAGTGGTGGGTGAAAA 60
consensus_3941#1      ----------------GAATCATCATTATATATAATGGAGAGTAAAGTGGTGGGTGAAAA 44
                                      **************************   ***************

consensus_3941#0      TCCACCGTAGATATGATATGATTTATCCTCGTCCAGGGGCCAAGACATGCCTAGGGCTGG 120
consensus_3941#1      TCCACCGTAGATATGATATGATTTATCCTCGTCCAGGGGCCAAGACATGCCTAGGGCTGG 104
                      ************************************************************

consensus_3941#0      TAGTGCTTAAATTCTAGGCCAAACTCTGCAATCCAATTCAGGCCCTATAAAAATACAATA 180
consensus_3941#1      TAGTGCTTAAATTCTAGGCCAAACTCTGTAATCCAATCCAGGCCCTATAAAAATACAATA 164
                      **************************** ******** **********************

consensus_3941#0      GAAATTCTGAAAATATATAATGGGTAGTTAAGGGCATATTTGCTCAGCCCTAGCCGCCTT 240
consensus_3941#1      GAAATTCTGAAAATATATAATGGGTAGTTAAGGGCATATTTGCTCAGCCCTAGCCGCCTT 224
                      ************************************************************

consensus_3941#0      GGCTTTTCCTATGGCTCAATCCTTGTCCTCATCAATCTTGTTGAGCTTTCACCGAAGCTT 300
consensus_3941#1      GGCTTTTCCTATGGCTCAATCCTTGTCCTCATCAATCTTGTTGAGCTTTCACCGAAGCTT 284
                      ************************************************************

consensus_3941#0      CGGTAGATACTTATTATCCTGCTTGCAAGGAAATGGCACGATGCTCTCTTCTAATGTTGC 360
consensus_3941#1      CGGTAGATACTTATTATCCTGCTTGCAAGGAAATGGCACGATGCTCTCTTCT--TCGTG- 341
                      ****************************************************  *  ** 

consensus_3941#0      ATAAAAGCAAGATATTTCATTCAAAATGAAGGGAAGTGTTGTGATCAACAATCAAGCTTA 420
consensus_3941#1      ATGAGAGCGAAATCCCCCGCCCAATTCTTCCGGAGAAGGAGGAAGAGAAAAAGGCGCTCA 401
                      ** * *** * **    *   ***       ***   *  *  *   * **    *** *

consensus_3941#0      AAGATGAGTGCAGGACATTCTTAATAACCTAACTAGTAAATACTACTTGACTGCAACTTC 480
consensus_3941#1      C-GGCGACGGCGGGGGAAG--AGGTGGTTAGAACCCTTGATGCTGTC--GCTTCGTCGTC 456
                        *  **  ** **  *       *      *    *  ** **      ** *  * **

consensus_3941#0      AAATCTATTTGCTTTGTAAAAAAATGCATGTACGGTTTTGAGCGCCTAGGAAAAAAAATG 540
consensus_3941#1      GACGGGGAGCGGCGGATCGATGAGCGC-------GCCTCGTCCTCCGCGGCGATGGAATC 509
                       *        *     *  *  *  **       *  * *  * **  **  *   *** 

consensus_3941#0      CATGCCCTTGTATTTAGATTGTTTATTTCAGTTAGCTAAACTTCCACTATTATCACTTCT 600
consensus_3941#1      CGTG-------------------------------------------------------- 513
                      * **                                                        

consensus_3941#0      AGACCATGGTTGAACCTCCAGGTGTTCATAATCGATGTTCCAAATAGTTAACATATGATG 660
consensus_3941#1      ------------------------------------------------------------
                                                                                  

consensus_3941#0      TTCCAGTTCCAGTGGTATCGATAGTATTTAGATTTCATTTTCAAACAATAAAACCAGAAA 720
consensus_3941#1      ------------------------------------------------------------
                                                                                  

consensus_3941#0      CTTTACACCTCTAAACTACCATACTGTGTATAATGATAGTTACTTCCTAGGATGTTGTTT 780
consensus_3941#1      ------------------------------------------------------------
                                                                                  

consensus_3941#0      TTTCCTTTATTTTTAGAGGACTCCTTAAACTACCATATCTGTGCTTG 827
consensus_3941#1      -----------------------------------------------