cluster # 3963

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Oryza sativa
cluster # 3963 cluster # 3963 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3963#0 length = 773 sequences # 2

consensus_3963#1 length = 391 sequences # 1

consensusID : consensus_3963#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 773
fasta sequence

                              [CCTTTTTTTTTTTTTTGATCCATTTTTAAAAAAAATTACGTGATAATAGACCGCTCCGTTTTCCGTGCGGAGAGAATCACCACTACATAAACTATTTTTTCCGTGCGGTCAAATTGATTTTTCCGTGCGGAGGTTTTCCCCGTCTGGACCCACGCGTCTGGAAAAATAAATATTTTCACGTGCGGGCGGCCAACTGCACAAGATAATCATTTTCCCGTGTGGTCGGGTTAAGTGGACCGCACGGGTTAATAGATTATCCCGTGCGGTCAAATTATTTCACCTGCACGGAATAAAAAAACCAAAAATAAAAAAAACACAAAAATCGAAAGTCGCCGTCGAGCCCGGCTGCCACATCGCCCGGCCGTCGCCTCGTGCGCCGCTCGCCGCTCATCGCTCCTTCGCCAAGCCGCGCGGTGCCGTGGCAGCCGTGGCGTCTGCCGCTTGTCCCACTCCTGTCGCTCCTTCGCCGAGCCGCACGATGCCTCGGCCGCCGCGCCGTCCGCCGCCCGTCCCGCGGCCGCCGCTCCTCCGCTCACCGAGCTGCCGCGTCACCTCCGCCAGCAGCCGTCGCGCCCTGCCAATAGAGCCGCCGACGCTGCCCCCGTGCCCTCTCCCGCCGCCACCTTCTCCTCCTCCTGGTCGCTCTCGCTGAGCCACTGCTTCCGCCGAGCCACTGCTCCCTCACGGGGAGGAGGGGAGGGGCCACCGCCGCCGTTGACGGGGGAGGGGAGGGGAAGGAGTAGGGGAAGGTGGGGAGGAGTGGCTGAGAATAG]

[+] EMBL CB682714             [CCTTTTTTTTTTTTTTGATCCATTTTTAAAAAAAATTACGTGATAATAGACCGCTCCGTTTTCCGTGCGGAGAGAATCACCACTACATAAACTATTTTTTCCGTGCGGTCAAATTGATTTTTCCGTGCGGAGGTTTTCCCCGTCTGGACCCACGCGTCTGGAAAAATAAATATTTTCACGTGCGGGCGGCCAACTGCACAAGATAATCATTTTCCCGTGTGGTCGGGTTAAGTGGACCGCACGGGTTAATAGATTATCCCGTGCGGTCAAATTATTTCACCTGCACGGAATAAAAAAACCAAAAATAAAAAAAACACAAAAATCGAAAGTCGCCGTCGAGCCCGGCTGCCACATCGCCCGGCCGTCGCCTCGTGCGCCGCTCGCCGCTCATCGCTCCTTCGCCAAGCCGCGCGGTGCCGTGGCAGCCGTGGCGTCTGCCGCTTGTCCCACTCCTGTCGCTCCTTCGCCGAGCCGCACGATGCCTCGGCCGCCGCGCCGTCCGCCGCCCGTCCCGCGGCCGCCGCTCCTCCGCTCACCGAGCTGCCGCGTCACCTCCGCCAGCAGCCGTCGCGCCCTGCCAATAGAGCCGCCGACGCTGCCCCCGTGCCCTCTCCCGCCGCCACCTTCTCCTCCTCCTGGTCGCTCTCGCTGAGCCACTGCTTCCGCCGAGCCACTGCTCCCTCACGGGGAGGAGGGGAGGGGCCACCGCCGCCGT                                                          ]
[-] EMBL AK119996             [                                                                                                                                                                                                             ATCATTTTCCCGTGTGGTCGGGTTAAGTGGACCGCACGGGTTAATAGATTATCCCGTGCGGTCAAATTATTTCACCTGCACGGAATAAAAAAACCAAAAATAAAAAAAACACAAAAATCGAAAGTCGCCGTCGAGCCCGGCTGCCACATCGCCCGGCCGTCGCCTCGTGCGCCGCTCGCCGCTCATCGCTCCTTCGCCAAGCCGCGCGGTGCCGTGGCAGCCGTGGCGTCTGCCGCTTGTCCCACTCCTGTCGCTCCTTCGCCGAGCCGCACGATGCCTCGGCCGCCGCGCCGTCCGCCGCCCGTCCCGCGGCCGCCGCTCCTCCGCTCACCGAGCTGCCGCGTCACCTCCGCCAGCAGCCGTCGCGCCCTGCCAATAGAGCCGCCGACGCTGCCCCCGTGCCCTCTCCCGCCGCCACCTTCTCCTCCTCCTGGTCGCTCTCGCTGAGCCACTGCTTCCGCCGAGCCACTGCTCCCTCACGGGGAGGAGGGGAGGGGCCACCGCCGCCGTTGACGGGGGAGGGGAGGGGAAGGAGTAGGGGAAGGTGGGGAGGAGTGGCTGAGAATAG]




>consensus_3963#0
CCTTTTTTTTTTTTTTGATCCATTTTTAAAAAAAATTACGTGATAATAGACCGCTCCGTT
TTCCGTGCGGAGAGAATCACCACTACATAAACTATTTTTTCCGTGCGGTCAAATTGATTT
TTCCGTGCGGAGGTTTTCCCCGTCTGGACCCACGCGTCTGGAAAAATAAATATTTTCACG
TGCGGGCGGCCAACTGCACAAGATAATCATTTTCCCGTGTGGTCGGGTTAAGTGGACCGC
ACGGGTTAATAGATTATCCCGTGCGGTCAAATTATTTCACCTGCACGGAATAAAAAAACC
AAAAATAAAAAAAACACAAAAATCGAAAGTCGCCGTCGAGCCCGGCTGCCACATCGCCCG
GCCGTCGCCTCGTGCGCCGCTCGCCGCTCATCGCTCCTTCGCCAAGCCGCGCGGTGCCGT
GGCAGCCGTGGCGTCTGCCGCTTGTCCCACTCCTGTCGCTCCTTCGCCGAGCCGCACGAT
GCCTCGGCCGCCGCGCCGTCCGCCGCCCGTCCCGCGGCCGCCGCTCCTCCGCTCACCGAG
CTGCCGCGTCACCTCCGCCAGCAGCCGTCGCGCCCTGCCAATAGAGCCGCCGACGCTGCC
CCCGTGCCCTCTCCCGCCGCCACCTTCTCCTCCTCCTGGTCGCTCTCGCTGAGCCACTGC
TTCCGCCGAGCCACTGCTCCCTCACGGGGAGGAGGGGAGGGGCCACCGCCGCCGTTGACG
GGGGAGGGGAGGGGAAGGAGTAGGGGAAGGTGGGGAGGAGTGGCTGAGAATAG

consensusID : consensus_3963#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 391
fasta sequence

                              [TGTGGTTGGTTTATTTTGTGGCGGGCGGCCAACTGCACAAGATAATCATTTTCCCGTGTGGTCGGGTTAAGTGGACCGCACGGGTTAATAGATTATCCCGTGCGGTCAAATTATTTCTCCTGCACGGAATAAAAAAACCGAAAATAAAAAAAACACAAAAATCGAAAGTCGCCGTCGAGCCCGGCTGCCACATCGCCCGGCCGTCGCCTCGTGCGCCGCTCGCCGCTCATCGCTCCTTCGCCAAGCCGCGCGGTGCCGTGGCAGCCGTGGCGTCTGCCGCTTGTCCCACTCCTGTCGCTCCTTCGCCGAGCCGGGGATGCCTCGGCCGCCGCGCCGTCCGCCGCCCGTCCCGCGGCCGCCGCTCCTCCGCTCACCGAGCTGCTAAGGCGCC]

[-] EMBL CB681880             [TGTGGTTGGTTTATTTTGTGGCGGGCGGCCAACTGCACAAGATAATCATTTTCCCGTGTGGTCGGGTTAAGTGGACCGCACGGGTTAATAGATTATCCCGTGCGGTCAAATTATTTCTCCTGCACGGAATAAAAAAACCGAAAATAAAAAAAACACAAAAATCGAAAGTCGCCGTCGAGCCCGGCTGCCACATCGCCCGGCCGTCGCCTCGTGCGCCGCTCGCCGCTCATCGCTCCTTCGCCAAGCCGCGCGGTGCCGTGGCAGCCGTGGCGTCTGCCGCTTGTCCCACTCCTGTCGCTCCTTCGCCGAGCCGGGGATGCCTCGGCCGCCGCGCCGTCCGCCGCCCGTCCCGCGGCCGCCGCTCCTCCGCTCACCGAGCTGCTAAGGCGCC]




>consensus_3963#1
TGTGGTTGGTTTATTTTGTGGCGGGCGGCCAACTGCACAAGATAATCATTTTCCCGTGTG
GTCGGGTTAAGTGGACCGCACGGGTTAATAGATTATCCCGTGCGGTCAAATTATTTCTCC
TGCACGGAATAAAAAAACCGAAAATAAAAAAAACACAAAAATCGAAAGTCGCCGTCGAGC
CCGGCTGCCACATCGCCCGGCCGTCGCCTCGTGCGCCGCTCGCCGCTCATCGCTCCTTCG
CCAAGCCGCGCGGTGCCGTGGCAGCCGTGGCGTCTGCCGCTTGTCCCACTCCTGTCGCTC
CTTCGCCGAGCCGGGGATGCCTCGGCCGCCGCGCCGTCCGCCGCCCGTCCCGCGGCCGCC
GCTCCTCCGCTCACCGAGCTGCTAAGGCGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3963#0      CCTTTTTTTTTTTTTTGATCCATTTTTAAAAAAAATTACGTGATAATAGACCGCTCCGTT 60
consensus_3963#1      ------------------------------------------------------------
                                                                                  

consensus_3963#0      TTCCGTGCGGAGAGAATCACCACTACATAAACTATTTTTTCCGTGCGGTCAAATTGATTT 120
consensus_3963#1      ------------------------------------------------------------
                                                                                  

consensus_3963#0      TTCCGTGCGGAGGTTTTCCCCGTCTGGACCCACGCGTCTGGAAAAATAAATATTTTCACG 180
consensus_3963#1      ----------------------------------------TGTGGTTGGTTTATTTTGTG 20
                                                                    *   *  ***   *

consensus_3963#0      TGCGGGCGGCCAACTGCACAAGATAATCATTTTCCCGTGTGGTCGGGTTAAGTGGACCGC 240
consensus_3963#1      -GCGGGCGGCCAACTGCACAAGATAATCATTTTCCCGTGTGGTCGGGTTAAGTGGACCGC 79
                       ***********************************************************

consensus_3963#0      ACGGGTTAATAGATTATCCCGTGCGGTCAAATTATTTCACCTGCACGGAATAAAAAAACC 300
consensus_3963#1      ACGGGTTAATAGATTATCCCGTGCGGTCAAATTATTTCTCCTGCACGGAATAAAAAAACC 139
                      ************************************** *********************

consensus_3963#0      AAAAATAAAAAAAACACAAAAATCGAAAGTCGCCGTCGAGCCCGGCTGCCACATCGCCCG 360
consensus_3963#1      GAAAATAAAAAAAACACAAAAATCGAAAGTCGCCGTCGAGCCCGGCTGCCACATCGCCCG 199
                       ***********************************************************

consensus_3963#0      GCCGTCGCCTCGTGCGCCGCTCGCCGCTCATCGCTCCTTCGCCAAGCCGCGCGGTGCCGT 420
consensus_3963#1      GCCGTCGCCTCGTGCGCCGCTCGCCGCTCATCGCTCCTTCGCCAAGCCGCGCGGTGCCGT 259
                      ************************************************************

consensus_3963#0      GGCAGCCGTGGCGTCTGCCGCTTGTCCCACTCCTGTCGCTCCTTCGCCGAGCCGCACGAT 480
consensus_3963#1      GGCAGCCGTGGCGTCTGCCGCTTGTCCCACTCCTGTCGCTCCTTCGCCGAGCCGGG-GAT 318
                      ******************************************************   ***

consensus_3963#0      GCCTCGGCCGCCGCGCCGTCCGCCGCCCGTCCCGCGGCCGCCGCTCCTCCGCTCACCGAG 540
consensus_3963#1      GCCTCGGCCGCCGCGCCGTCCGCCGCCCGTCCCGCGGCCGCCGCTCCTCCGCTCACCGAG 378
                      ************************************************************

consensus_3963#0      CTGCCGCGTCACCTCCGCCAGCAGCCGTCGCGCCCTGCCAATAGAGCCGCCGACGCTGCC 600
consensus_3963#1      CTGCTAAGGCGCC----------------------------------------------- 391
                      ****   * * **                                               

consensus_3963#0      CCCGTGCCCTCTCCCGCCGCCACCTTCTCCTCCTCCTGGTCGCTCTCGCTGAGCCACTGC 660
consensus_3963#1      ------------------------------------------------------------
                                                                                  

consensus_3963#0      TTCCGCCGAGCCACTGCTCCCTCACGGGGAGGAGGGGAGGGGCCACCGCCGCCGTTGACG 720
consensus_3963#1      ------------------------------------------------------------
                                                                                  

consensus_3963#0      GGGGAGGGGAGGGGAAGGAGTAGGGGAAGGTGGGGAGGAGTGGCTGAGAATAG 773
consensus_3963#1      -----------------------------------------------------