cluster # 4044

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Oryza sativa
cluster # 4044 cluster # 4044 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4044#0 length = 741 sequences # 1

consensus_4044#1 length = 426 sequences # 1
consensus_4044#2 length = 156 sequences # 1

consensusID : consensus_4044#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 741
fasta sequence

                              [TCTTTTTTTTAAGAAGATAGCAATGTTGGCCCGCAGATAAGCTTATTGTACACAGATATGACAGAGCAGGACTATGGTAGCTTAATGCCAGCAGTAAAGCAAAAAAAAAAGTACAGAGAAGTTGGGACTGATGACAACAATGTCGAGCTCAACAGGACTACAGGAGAACTGAAAAGAGGCTGATCACCTATCATCATGCTATTCATGTTGCAAGAATCATACAAGCAAGCTTAACTTCATGGCCAATGGAGCCACTTTACAAACGAGTACATGGAAAAGATGCTGCTCAAAATAATTAGGTGGCACATATAAATCTTGAACAAAATCTACAAGCAAAAAAGCTGCATCCTAGAAAAAAGGGAAAAAGAAGAACGAAGAAATATACCAGCCGCACCACAAGATTGCCCCTTTATGCCAAGTGGAGTCATTTTTGGGATACAAAAGCTCCAAGCAAAAGCTCCTTGACATCTCTTCTTATGTCCTCACAATTACATTGCCGTCGCCGCCATCCTCCTGTATGTATGTAGTTGCAACAGGCATAATTGAAACCCTCTAAATACTATCTCTCTGAATCCTCGGGAATTGATGATAGCCTCTGTTGCTCAAGAAATGATGAATCCAGAAATTTTGCAACAAATGCCCACAACCTGTATACATCCTCAAAGTTTGTGAGGAACCCAAGAGAAGCTGTAACCACTTCAATCCCAATTATATCATTCTTGCTACTTTTCTTCTCACGTC]

[+] EMBL CB672593             [TCTTTTTTTTAAGAAGATAGCAATGTTGGCCCGCAGATAAGCTTATTGTACACAGATATGACAGAGCAGGACTATGGTAGCTTAATGCCAGCAGTAAAGCAAAAAAAAAAGTACAGAGAAGTTGGGACTGATGACAACAATGTCGAGCTCAACAGGACTACAGGAGAACTGAAAAGAGGCTGATCACCTATCATCATGCTATTCATGTTGCAAGAATCATACAAGCAAGCTTAACTTCATGGCCAATGGAGCCACTTTACAAACGAGTACATGGAAAAGATGCTGCTCAAAATAATTAGGTGGCACATATAAATCTTGAACAAAATCTACAAGCAAAAAAGCTGCATCCTAGAAAAAAGGGAAAAAGAAGAACGAAGAAATATACCAGCCGCACCACAAGATTGCCCCTTTATGCCAAGTGGAGTCATTTTTGGGATACAAAAGCTCCAAGCAAAAGCTCCTTGACATCTCTTCTTATGTCCTCACAATTACATTGCCGTCGCCGCCATCCTCCTGTATGTATGTAGTTGCAACAGGCATAATTGAAACCCTCTAAATACTATCTCTCTGAATCCTCGGGAATTGATGATAGCCTCTGTTGCTCAAGAAATGATGAATCCAGAAATTTTGCAACAAATGCCCACAACCTGTATACATCCTCAAAGTTTGTGAGGAACCCAAGAGAAGCTGTAACCACTTCAATCCCAATTATATCATTCTTGCTACTTTTCTTCTCACGTC]




>consensus_4044#0
TCTTTTTTTTAAGAAGATAGCAATGTTGGCCCGCAGATAAGCTTATTGTACACAGATATG
ACAGAGCAGGACTATGGTAGCTTAATGCCAGCAGTAAAGCAAAAAAAAAAGTACAGAGAA
GTTGGGACTGATGACAACAATGTCGAGCTCAACAGGACTACAGGAGAACTGAAAAGAGGC
TGATCACCTATCATCATGCTATTCATGTTGCAAGAATCATACAAGCAAGCTTAACTTCAT
GGCCAATGGAGCCACTTTACAAACGAGTACATGGAAAAGATGCTGCTCAAAATAATTAGG
TGGCACATATAAATCTTGAACAAAATCTACAAGCAAAAAAGCTGCATCCTAGAAAAAAGG
GAAAAAGAAGAACGAAGAAATATACCAGCCGCACCACAAGATTGCCCCTTTATGCCAAGT
GGAGTCATTTTTGGGATACAAAAGCTCCAAGCAAAAGCTCCTTGACATCTCTTCTTATGT
CCTCACAATTACATTGCCGTCGCCGCCATCCTCCTGTATGTATGTAGTTGCAACAGGCAT
AATTGAAACCCTCTAAATACTATCTCTCTGAATCCTCGGGAATTGATGATAGCCTCTGTT
GCTCAAGAAATGATGAATCCAGAAATTTTGCAACAAATGCCCACAACCTGTATACATCCT
CAAAGTTTGTGAGGAACCCAAGAGAAGCTGTAACCACTTCAATCCCAATTATATCATTCT
TGCTACTTTTCTTCTCACGTC

consensusID : consensus_4044#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 426
fasta sequence

                              [TTTTTTTTTTGGCAAGAATCATACAAGCAAGCTTAACTTCAGGGCCAAGGGAGCCACTTTACAAACGAGTACATGGAAAAGATGCTGCTCAAAATAATTAGGTGGCACATATAAATCTGGAACAAAATCTACAAGCAAAAAAGCTGCATCCTAGAAAAAGAGGGAAAAAGAAGAACGAAGAAATATACCAGCCGCACCACAAGATGGCCCCTTTATGCCAAGGGGAGTCATTTTGGGGATACAAAAGCTCCAAGCAAAAGCTCCTGTGACATCTCTTCTTATGTCCTCACAATTACATGTGCGTCGCCGCCATCCTCCGTGTATGTATGTAGTTGCAACAGGCATAATGGAAACCCTCTAAATATATCTCTCTGAATCCTCGGGAATGTGATGATAGCCTCTGTGGCTCAAGAAGTGTGAATCCAG]

[-] EMBL BI812568             [TTTTTTTTTTGGCAAGAATCATACAAGCAAGCTTAACTTCAGGGCCAAGGGAGCCACTTTACAAACGAGTACATGGAAAAGATGCTGCTCAAAATAATTAGGTGGCACATATAAATCTGGAACAAAATCTACAAGCAAAAAAGCTGCATCCTAGAAAAAGAGGGAAAAAGAAGAACGAAGAAATATACCAGCCGCACCACAAGATGGCCCCTTTATGCCAAGGGGAGTCATTTTGGGGATACAAAAGCTCCAAGCAAAAGCTCCTGTGACATCTCTTCTTATGTCCTCACAATTACATGTGCGTCGCCGCCATCCTCCGTGTATGTATGTAGTTGCAACAGGCATAATGGAAACCCTCTAAATATATCTCTCTGAATCCTCGGGAATGTGATGATAGCCTCTGTGGCTCAAGAAGTGTGAATCCAG]




>consensus_4044#1
TTTTTTTTTTGGCAAGAATCATACAAGCAAGCTTAACTTCAGGGCCAAGGGAGCCACTTT
ACAAACGAGTACATGGAAAAGATGCTGCTCAAAATAATTAGGTGGCACATATAAATCTGG
AACAAAATCTACAAGCAAAAAAGCTGCATCCTAGAAAAAGAGGGAAAAAGAAGAACGAAG
AAATATACCAGCCGCACCACAAGATGGCCCCTTTATGCCAAGGGGAGTCATTTTGGGGAT
ACAAAAGCTCCAAGCAAAAGCTCCTGTGACATCTCTTCTTATGTCCTCACAATTACATGT
GCGTCGCCGCCATCCTCCGTGTATGTATGTAGTTGCAACAGGCATAATGGAAACCCTCTA
AATATATCTCTCTGAATCCTCGGGAATGTGATGATAGCCTCTGTGGCTCAAGAAGTGTGA
ATCCAG

consensusID : consensus_4044#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 156
fasta sequence

                              [ACGCAAGCAAATATACCCAGCCGCACCACCAAGCATGGCCCCTTTATGCCAAGGTGGAGTCATTTTTGGGGATACAAAATGCTCCAAAGCAAAAGCTCCTTGACATCTCTTCTTATGTCCTCACAATTACATTGCCGTACGCCGCACATCCTCCGG]

[-] EMBL BI809347             [ACGCAAGCAAATATACCCAGCCGCACCACCAAGCATGGCCCCTTTATGCCAAGGTGGAGTCATTTTTGGGGATACAAAATGCTCCAAAGCAAAAGCTCCTTGACATCTCTTCTTATGTCCTCACAATTACATTGCCGTACGCCGCACATCCTCCGG]




>consensus_4044#2
ACGCAAGCAAATATACCCAGCCGCACCACCAAGCATGGCCCCTTTATGCCAAGGTGGAGT
CATTTTTGGGGATACAAAATGCTCCAAAGCAAAAGCTCCTTGACATCTCTTCTTATGTCC
TCACAATTACATTGCCGTACGCCGCACATCCTCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4044#0      TCTTTTTTTTAAGAAGATAGCAATGTTGGCCCGCAGATAAGCTTATTGTACACAGATATG 60
consensus_4044#1      ------------------------------------------------------------
consensus_4044#2      ------------------------------------------------------------
                                                                                  

consensus_4044#0      ACAGAGCAGGACTATGGTAGCTTAATGCCAGCAGTAAAGCAAAAAAAAAAGTACAGAGAA 120
consensus_4044#1      ------------------------------------------------------------
consensus_4044#2      ------------------------------------------------------------
                                                                                  

consensus_4044#0      GTTGGGACTGATGACAACAATGTCGAGCTCAACAGGACTACAGGAGAACTGAAAAGAGGC 180
consensus_4044#1      ------------------------------------------------------------
consensus_4044#2      ------------------------------------------------------------
                                                                                  

consensus_4044#0      TGATCACCTATCATCATGCTATTCATGTTGCAAGAATCATACAAGCAAGCTTAACTTCAT 240
consensus_4044#1      ------------------TTTTTTTTTTGGCAAGAATCATACAAGCAAGCTTAACTTCAG 42
consensus_4044#2      ------------------------------------------------------------
                                                                                  

consensus_4044#0      GGCCAATGGAGCCACTTTACAAACGAGTACATGGAAAAGATGCTGCTCAAAATAATTAGG 300
consensus_4044#1      GGCCAAGGGAGCCACTTTACAAACGAGTACATGGAAAAGATGCTGCTCAAAATAATTAGG 102
consensus_4044#2      ------------------------------------------------------------
                                                                                  

consensus_4044#0      TGGCACATATAAATCTTGAACAAAATCTACAAGCAAAAAAGCTGCATCCTAGAAAAA-AG 359
consensus_4044#1      TGGCACATATAAATCTGGAACAAAATCTACAAGCAAAAAAGCTGCATCCTAGAAAAAGAG 162
consensus_4044#2      ------------------------------------------------------------
                                                                                  

consensus_4044#0      GGAAAAAGAAGAACGAAGAAATATACC-AGCCGCACCACAAG--ATTGCCCCTTTATGCC 416
consensus_4044#1      GGAAAAAGAAGAACGAAGAAATATACC-AGCCGCACCACAAG--ATGGCCCCTTTATGCC 219
consensus_4044#2      ----------ACGCAAGCAAATATACCCAGCCGCACCACCAAGCATGGCCCCTTTATGCC 50
                                   * *  ********* *********** *   ** *************

consensus_4044#0      AAGT-GGAGTCATTTT-TGGGATACAAAA-GCTCCAA-GCAAAAGCTCCT-TGACATCTC 471
consensus_4044#1      AAGG-GGAGTCATTTT-GGGGATACAAAA-GCTCCAA-GCAAAAGCTCCTGTGACATCTC 275
consensus_4044#2      AAGGTGGAGTCATTTTTGGGGATACAAAATGCTCCAAAGCAAAAGCTCCT-TGACATCTC 109
                      ***  ***********  *********** ******* ************ *********

consensus_4044#0      TTCTTATGTCCTCACAATTACATTGCCGT-CGCCGC-CATCCTCC-TGTATGTATGTAGT 528
consensus_4044#1      TTCTTATGTCCTCACAATTACATGTGCGT-CGCCGC-CATCCTCCGTGTATGTATGTAGT 333
consensus_4044#2      TTCTTATGTCCTCACAATTACATTGCCGTACGCCGCACATCCTCCGG------------- 156
                      ***********************   *** ****** ********               

consensus_4044#0      TGCAACAGGCATAATTGAAACCCTCTAAATACTATCTCTCTGAATCCTCGGGAAT-TGAT 587
consensus_4044#1      TGCAACAGGCATAATGGAAACCCTCTAAATA-TATCTCTCTGAATCCTCGGGAATGTGAT 392
consensus_4044#2      ------------------------------------------------------------
                                                                                  

consensus_4044#0      GATAGCCTCTGTTGCTCAAGAAATGATGAATCCAGAAATTTTGCAACAAATGCCCACAAC 647
consensus_4044#1      GATAGCCTCTGTGGCTCAAGAAGTG-TGAATCCAG------------------------- 426
consensus_4044#2      ------------------------------------------------------------
                                                                                  

consensus_4044#0      CTGTATACATCCTCAAAGTTTGTGAGGAACCCAAGAGAAGCTGTAACCACTTCAATCCCA 707
consensus_4044#1      ------------------------------------------------------------
consensus_4044#2      ------------------------------------------------------------
                                                                                  

consensus_4044#0      ATTATATCATTCTTGCTACTTTTCTTCTCACGTC 741
consensus_4044#1      ----------------------------------
consensus_4044#2      ----------------------------------