cluster # 4054

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Oryza sativa
cluster # 4054 cluster # 4054 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4054#0 length = 636 sequences # 2

consensus_4054#1 length = 568 sequences # 1

consensusID : consensus_4054#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 636
fasta sequence

                              [CAAGAATTCGGCACGAGAATTGTTACAATGCCAGCCAAGGCAGCTGCCAAAAAACCCGAAAAGGAACCTGAAGGTTCATCAGGTGGCAAGGCTAAGAAGAAGAAGTGGTCGAAAGGAAAAGTCCGTGACAAACTTAACAACATGGTCTTATTCGACAAAGCCACATACGACAAATGCGTTAAAGATTTGCCACAATACAAATTAATCACACCAGCTATCATCTGTGAACGTTTTAAAGTTCGTGGTTCACTCGCACGAGCTATTCTTCGTGAACTCGCGAAGAAAAATCTTATCCGACCGGTTGTTAAACATAGCCGACAAGAAATTTACACACGAGCAACAAAAGAAGATGTTGTTGCCGAACAAGAAGCTGCCAAAGAAGCAACAACAGAAAAGAAAGGCGGTGGTGGTGTGAAAAAAAGAGCGAAGAAAAATGCCGCTGCTTGTTGCTGCCGAAGAAACTGCAGCTTGATAGATTCGTTTTCGGTTTGGTTTCTTTTTTTGGAAATAAAAACTTTTGAAGAAAAAATTAAAAATAA-ATCC-TTAGATCC-AAAAAAAACACGAGAAATTTCTTTCGTCCGATCTTTCTTTTTGTAGAANANNAAANAAAAAAAAAAAAAACCTCGAGGGGGGGCC]

[+] EMBL BE039219             [CAAGAATTCGGCACGAGAATTGTTACAATGCCAGCCAAGGCAGCTGCCAAAAAACCCGAAAAGGAACCTGAAGGTTCATCAGGTGGCAAGGCTAAGAAGAAGAAGTGGTCGAAAGGAAAAGTCCGTGACAAACTTAACAACATGGTCTTATTCGACAAAGCCACATACGACAAATGCGTTAAAGATTTGCCACAATACAAATTAATCACACCAGCTATCATCTGTGAACGTTTTAAAGTTCGTGGTTCACTCGCACGAGCTATTCTTCGTGAACTCGCGAAGAAAAATCTTATCCGACCGGTTGTTAAACATAGCCGACAAGAAATTTACACACGAGCAACAAAAGAAGATGTTGTTGCCGAACAAGAAGCTGCCAAAGAAGCAACAACAGAAAAGAAAGGCGGTGGTGGTGTGAAAAAAAGAGCGAAGAAAAATGCCGCTGCTTGTTGCTGCCGAAGAAACTGCAGCTTGATAGATTCGTTTTCGGTTTGGTTTCTTTTTTTGGAAATAAAAACTTTTGAAGAAAAAATTAAAAATAA ATCC TTAGATCC AAAAAAAACACGAGAAATTTCTTTCGTCCGA                                                      ]
[+] EMBL CA758801             [                       TACAATGCCAGCCAAGGCAGCTGCCAAAAAACCCGAAAAGAAACCTGAAGGTTCATCAGGTGGCAAGGCTAAGAAGAAGAAGTGGTCGAAAGGAAAAGTCCGTGACAAACTTAACAACATGGTCTTATTCGACAAAGCCACATACGACAAATGCGTTAAAGATTTGCCACAATACAAATTAATCACACCAGCTATCATCTGTGAACGTTTTAAAGTTCGTGGTTCACTCGCACGAGCTATTCTTCGTGAACTCGCGAAAAAAAATCTTATCCGACCGGTTGTTAAACATAGCCGACAAGAAATTTACACACGAGCAACAAAAGAAGATGTTGCTGCTGAACAAGAAGCTGCCAAAGAAGCAACAACAGAAAAGAAAGCCGGTGGTGGTGTGAAAAAAGGAGCGAAGAAAAATGCCGCTGC TGCTGCTGCCGAAGAAGCTGCAGCTGAATAGATTCGTTTTC GTTTTGTTTC TTTTTTGAAAATAAAAACATAAGAAG AAAAATT AAAATAAGATCCATAAGATCCAAAAAAAAACAAAAGAAATATCATTCGTACGATCTTTCTTTTTGTAGAANANNAAANAAAAAAAAAAAAAACCTCGAGGGGGGGCC]




>consensus_4054#0
CAAGAATTCGGCACGAGAATTGTTACAATGCCAGCCAAGGCAGCTGCCAAAAAACCCGAA
AAGGAACCTGAAGGTTCATCAGGTGGCAAGGCTAAGAAGAAGAAGTGGTCGAAAGGAAAA
GTCCGTGACAAACTTAACAACATGGTCTTATTCGACAAAGCCACATACGACAAATGCGTT
AAAGATTTGCCACAATACAAATTAATCACACCAGCTATCATCTGTGAACGTTTTAAAGTT
CGTGGTTCACTCGCACGAGCTATTCTTCGTGAACTCGCGAAGAAAAATCTTATCCGACCG
GTTGTTAAACATAGCCGACAAGAAATTTACACACGAGCAACAAAAGAAGATGTTGTTGCC
GAACAAGAAGCTGCCAAAGAAGCAACAACAGAAAAGAAAGGCGGTGGTGGTGTGAAAAAA
AGAGCGAAGAAAAATGCCGCTGCTTGTTGCTGCCGAAGAAACTGCAGCTTGATAGATTCG
TTTTCGGTTTGGTTTCTTTTTTTGGAAATAAAAACTTTTGAAGAAAAAATTAAAAATAAA
TCCTTAGATCCAAAAAAAACACGAGAAATTTCTTTCGTCCGATCTTTCTTTTTGTAGAAN
ANNAAANAAAAAAAAAAAAAACCTCGAGGGGGGGCC

consensusID : consensus_4054#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 568
fasta sequence

                              [CAGCTAAAGCAGCTCCCAAGAAAACCGAANAAAAACCTTCCGAAGGTTCATCTGGAAGTAAAGCAAAAAAGAAGAAATGGTCGAAAGGAAAAGTTCGAGATAAACTTAATAACATGGTTCTCTTTGATAAACCAACCTATGATAAATGCGTCAAAGATCTACCCCAATATAAACTCATAACGCCGGCTATTATTTGCGAACGTTTTAAAGTTCGTGGTTCGCTTGCACGAGCTATTCTTCGTGAACTTACNAAGAANAATCTTATTCGACCTGTTGTTAAACATAGTCGACAAGAAATCTATACACGTGCAACGAAAGAAGAAATACCATCTGAACAAGATGCTGGCNAGGAAGTTGCTCAAGAAAAGAAAGGTGGTGGCGGTGTTAAGAAAGGTGCTAAGAAAGCTGCAGCTGCCGCTGAAGAAGTCGCAGCCGAATAGATNTGGAATACNATGAANATAANACAATAANAGAAATTTGGTTTTTTGTTTTGGNTTTTTTTGGCTTTTGGTTTTATGAANATAANACANAGAANAAACAAGATTAACAAGAACATAGGANAAAAAAA]

[+] EMBL CA755026             [CAGCTAAAGCAGCTCCCAAGAAAACCGAANAAAAACCTTCCGAAGGTTCATCTGGAAGTAAAGCAAAAAAGAAGAAATGGTCGAAAGGAAAAGTTCGAGATAAACTTAATAACATGGTTCTCTTTGATAAACCAACCTATGATAAATGCGTCAAAGATCTACCCCAATATAAACTCATAACGCCGGCTATTATTTGCGAACGTTTTAAAGTTCGTGGTTCGCTTGCACGAGCTATTCTTCGTGAACTTACNAAGAANAATCTTATTCGACCTGTTGTTAAACATAGTCGACAAGAAATCTATACACGTGCAACGAAAGAAGAAATACCATCTGAACAAGATGCTGGCNAGGAAGTTGCTCAAGAAAAGAAAGGTGGTGGCGGTGTTAAGAAAGGTGCTAAGAAAGCTGCAGCTGCCGCTGAAGAAGTCGCAGCCGAATAGATNTGGAATACNATGAANATAANACAATAANAGAAATTTGGTTTTTTGTTTTGGNTTTTTTTGGCTTTTGGTTTTATGAANATAANACANAGAANAAACAAGATTAACAAGAACATAGGANAAAAAAA]




>consensus_4054#1
CAGCTAAAGCAGCTCCCAAGAAAACCGAANAAAAACCTTCCGAAGGTTCATCTGGAAGTA
AAGCAAAAAAGAAGAAATGGTCGAAAGGAAAAGTTCGAGATAAACTTAATAACATGGTTC
TCTTTGATAAACCAACCTATGATAAATGCGTCAAAGATCTACCCCAATATAAACTCATAA
CGCCGGCTATTATTTGCGAACGTTTTAAAGTTCGTGGTTCGCTTGCACGAGCTATTCTTC
GTGAACTTACNAAGAANAATCTTATTCGACCTGTTGTTAAACATAGTCGACAAGAAATCT
ATACACGTGCAACGAAAGAAGAAATACCATCTGAACAAGATGCTGGCNAGGAAGTTGCTC
AAGAAAAGAAAGGTGGTGGCGGTGTTAAGAAAGGTGCTAAGAAAGCTGCAGCTGCCGCTG
AAGAAGTCGCAGCCGAATAGATNTGGAATACNATGAANATAANACAATAANAGAAATTTG
GTTTTTTGTTTTGGNTTTTTTTGGCTTTTGGTTTTATGAANATAANACANAGAANAAACA
AGATTAACAAGAACATAGGANAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4054#0      CAAGAATTCGGCACGAGAATTGTTACAATGCCAGCCAAGGCAGCTGCCAAAAAACCCGAA 60
consensus_4054#1      -------------------------------CAGCTAAAGCAGCTCCCAAGAAAACCGAA 29
                                                     **** ** ****** **** *** *****

consensus_4054#0      AAGGAACCT---GAAGGTTCATCAGGTGGCAAGGCTAAGAAGAAGAAGTGGTCGAAAGGA 117
consensus_4054#1      NAAAAACCTTCCGAAGGTTCATCTGGAAGTAAAGCAAAAAAGAAGAAATGGTCGAAAGGA 89
                       *  *****   *********** **  * ** ** ** ******** ************

consensus_4054#0      AAAGTCCGTGACAAACTTAACAACATGGTCTTATTCGACAAAGCCACATACGACAAATGC 177
consensus_4054#1      AAAGTTCGAGATAAACTTAATAACATGGTTCTCTTTGATAAACCAACCTATGATAAATGC 149
                      ***** ** ** ******** ********  * ** ** *** * ** ** ** ******

consensus_4054#0      GTTAAAGATTTGCCACAATACAAATTAATCACACCAGCTATCATCTGTGAACGTTTTAAA 237
consensus_4054#1      GTCAAAGATCTACCCCAATATAAACTCATAACGCCGGCTATTATTTGCGAACGTTTTAAA 209
                      ** ****** * ** ***** *** * ** ** ** ***** ** ** ************

consensus_4054#0      GTTCGTGGTTCACTCGCACGAGCTATTCTTCGTGAACTCGCGAAGAAAAATCTTATCCGA 297
consensus_4054#1      GTTCGTGGTTCGCTTGCACGAGCTATTCTTCGTGAACTTACNAAGAANAATCTTATTCGA 269
                      *********** ** ***********************  * ***** ******** ***

consensus_4054#0      CCGGTTGTTAAACATAGCCGACAAGAAATTTACACACGAGCAACAAAAGAAGATGTTGTT 357
consensus_4054#1      CCTGTTGTTAAACATAGTCGACAAGAAATCTATACACGTGCAACGAAAGAAGAAATACCA 329
                      ** ************** *********** ** ***** ***** ********  *    

consensus_4054#0      GCCGAACAAGAAGCTGCCAAAGAAGCAACAACAGAAAAGAAAGGCGGTGGTGGTGTGAAA 417
consensus_4054#1      TCTGAACAAGATGCTGGCNAGGAAGTTGCTCAAGAAAAGAAAGGTGGTGGCGGTGTTAAG 389
                       * ******** **** * * ****   *   ************ ***** ***** ** 

consensus_4054#0      AAAAGAGCGAAGAAAAATGCCGCTGCTTGTTGCTGCCGAAGAAACTGCAGCTTGATAGAT 477
consensus_4054#1      AAAGGTGCTAAGAAAGCTGCAGC-------TGCCGCTGAAGAAGTCGCAGCCGAATAGAT 442
                      *** * ** ******  *** **       *** ** ******   *****   ******

consensus_4054#0      TCGTTTTCGGTTTGGTTTCTTTTTTTGGAAATAAAAACTTTTGAAGAAAAAATTAAAAAT 537
consensus_4054#1      NTGGAATACNATGAANATAANACAATAANAGAAATTTGGTTTTTTGTTTTGGNTTTTTTT 502
                        *   *    *     *       *   *  **     ***   *       *     *

consensus_4054#0      AAATCCTTAGATCCAAAAAAAACACGAGAAATTTCTTTCGTCCGATCTTTCTTTTTGTAG 597
consensus_4054#1      GG--CTTTTGGTTTTATGAANATAANACANA--------GAANAAACAAGATTAACA-AG 551
                          * ** * *   *  ** * *  * * *        *    * *    **     **

consensus_4054#0      AANANNAAANAAAAAAAAAAAAAACCTCGAGGGGGGGCC 636
consensus_4054#1      AACATAGGANAAAAAAA---------------------- 568
                      ** *    *********