|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4072#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1646 fasta sequence
[CCCCGCCGCCGCTGCCGCCGCGCCGATCTGATCCGCAGAAATGCCTCGTCACCACCACCACGACCCGCCTCCGCCTCCGCCCGCCTGCTGCTCCTGCTGCTGCGGCTGCGACGGCGGCTGCTACCCCGCGCCGACCAGCTACTACTACCCCGTGCCGCCCCCGCCCCCGCCCGCGCCAACCTCCGCCTCCGACCACCTCCTCCACGCCATCGCGGCCCATCTCCTCCTCGGCTCCGCGCCCCCGCCCCCGGCCCCGACTCCCCCGCAGCCGCAGACCCAGCCTCCGCCGCCGCCGCCGCCGCCGCCCACCTCCGCGGCGCACCACGCGTACCACTACCAGTACCAGTACCAGTACGAGCAGCCCAAACCCCATCAGTATCCGCAGCCGCAGCAGGCCAACCCGTCGGACCACAGCCACGCCGTGCTCCACTCGCTCCTGCGCCGCGTGGCCGCGCTCGAGTCCACCCTCCCGCGCTGCTTCGCCTCGCCGCCCGTGCCGCCCCCGCTCCACCGGAACCCTCGCCACCGCCCCCGCGCGGCCGCGCACCGGGAGGAGGAGGACGACGAGGAGGAGGAGGACGACGACGAGGATGCACCGGCCTCGCTGCCGCCGCCGCCACGCCGTGCGCGGGCTCCGCCTTCACCAGCGAGGGAGCGGGCGGCGCGGACGATCCAGGCGCACTTCCGCCGCTTCCTGGCGCGGCGGTCCCGCACGCTGCGCCACCTCAAGGAGCTC-GCCGTCCTCCGGTCCAA-GGCCGCCGCGCTCCGGGGCTCCCTCTCCGGGCGAGGCAGGGTGGGCGACCCCGCCGCCATTTCTGAGGCCGCCATGGCCCTCCTCTTCCATCTCGACTCGATCCAGGGCGGTGACCCGATGATCCGTGAGGGAAAGCGCGCGGTGAGCCGGGAGCTTACCCGGATCTTGGAGTTTGTTGATAAGGTGCTAG-TCAAAGAGCATGGGG-AGATGGCAATGAATGGCGAATTGGATTGTAAAGACTACCATGAAGGTTGCAATGCCGCATTTGCGGCTAATCCGTCAGCGATGAACAAGAAGAAGGTAGGTTTCTGTGGTAATGGTAAAGTCCAAGAGCTGCATGATGAGGCTGAGCAAGAGCATGGCAGTGATGCTGATGAGAGCTCTGAGACCTCGAGCTCTGCTGAAGCTGAGGCGAGGAAGCGCTCAAACAGTAAGAGGGGTGCTCATGCCAAGCCCGGGCTTGCGGCGCCAATGCCTGTGTACATGGAGCCGAGAAGGATTGACGAGGAGAGGAGATAACCTGTGGTTCGCATCCTGCGATGCAATTTGAGGTTTAGAATTATGTGGATTGTCATGGTGTTGTTACATTCCTACCGTTGTTTTTTCACTGATATTTCCTGAGAAGAGTTTAGAACTTTTCAGATGGTAGAGTTTGTGCTGCAGCTATGATCTTTGGAACTAGGAGCCTTAGCCTGCTGTATGCTCAAATTCCCTGTGTGTTCATTGCCTTTGTTGCTGGGTTATACAATTGCACTGTTAGCTTTAGCATCGATAATTCTAGCTTGGATCATTTTGTGCACTAAAGATACCCTGCTTGATGTCATCATGTGGGATCTTGGATTAATCTGTCAATCATGTCCATTTTGATTAATCGAAATTCCCTGTGCTGCAG]
[+] EMBL AK120770 [CCCCGCCGCCGCTGCCGCCGCGCCGATCTGATCCGCAGAAATGCCTCGTCACCACCACCACGACCCGCCTCCGCCTCCGCCCGCCTGCTGCTCCTGCTGCTGCGGCTGCGACGGCGGCTGCTACCCCGCGCCGACCAGCTACTACTACCCCGTGCCGCCCCCGCCCCCGCCCGCGCCAACCTCCGCCTCCGACCACCTCCTCCACGCCATCGCGGCCCATCTCCTCCTCGGCTCCGCGCCCCCGCCCCCGGCCCCGACTCCCCCGCAGCCGCAGACCCAGCCTCCGCCGCCGCCGCCGCCGCCGCCCACCTCCGCGGCGCACCACGCGTACCACTACCAGTACCAGTACCAGTACGAGCAGCCCAAACCCCATCAGTATCCGCAGCCGCAGCAGGCCAACCCGTCGGACCACAGCCACGCCGTGCTCCACTCGCTCCTGCGCCGCGTGGCCGCGCTCGAGTCCACCCTCCCGCGCTGCTTCGCCTCGCCGCCCGTGCCGCCCCCGCTCCACCGGAACCCTCGCCACCGCCCCCGCGCGGCCGCGCACCGGGAGGAGGAGGACGACGAGGAGGAGGAGGACGACGACGAGGATGCACCGGCCTCGCTGCCGCCGCCGCCACGCCGTGCGCGGGCTCCGCCTTCACCAGCGAGGGAGCGGGCGGCGCGGACGATCCAGGCGCACTTCCGCCGCTTCCTGGCGCGGCGGTCCCGCACGCTGCGCCACCTCAAGGAGCTC GCCGTCCTCCGGTCCAA GGCCGCCGCGCTCCGGGGCTCCCTCTCCGGGCGAGGCAGGGTGGGCGACCCCGCCGCCATTTCTGAGGCCGCCATGGCCCTCCTCTTCCATCTCGACTCGATCCAGGGCGGTGACCCGATGATCCGTGAGGGAAAGCGCGCGGTGAGCCGGGAGCTTACCCGGATCTTGGAGTTTGTTGATAAGGTGCTAG TCAAAGAGCATGGGG AGATGGCAATGAATGGCGAATTGGATTGTAAAGACTACCATGAAGGTTGCAATGCCGCATTTGCGGCTAATCCGTCAGCGATGAACAAGAAGAAGGTAGGTTTCTGTGGTAATGGTAAAGTCCAAGAGCTGCATGATGAGGCTGAGCAAGAGCATGGCAGTGATGCTGATGAGAGCTCTGAGACCTCGAGCTCTGCTGAAGCTGAGGCGAGGAAGCGCTCAAACAGTAAGAGGGGTGCTCATGCCAAGCCCGGGCTTGCGGCGCCAATGCCTGTGTACATGGAGCCGAGAAGGATTGACGAGGAGAGGAGATAACCTGTGGTTCGCATCCTGCGATGCAATTTGAGGTTTAGAATTATGTGGATTGTCATGGTGTTGTTACATTCCTACCGTTGTTTTTTCACTGATATTTCCTGAGAAGAGTTTAGAACTTTTCAGATGGTAGAGTTTGTGCTGCAGCTATGATCTTTGGAACTAGGAGCCTTAGCCTGCTGTATGCTCAAATTCCCTGTGTGTTCATTGCCTTTGTTGCTGGGTTATACAATTGCACTGTTAGCTTTAGCATCGATAATTCTAGCTTGGATCATTTTGTGCACTAAAGATACCCTGCTTGATGTCATCATGTGGGATCTTGGATTAATCTGTCAATCATGTCCATTTTGATTAATCGAAATTCCCTGTGCTGCAG]
[+] EMBL BU667071 [ GGAGGAGGAGGACGAGGAGGAGGAGGAGGAGGACGACGAGGATGCACCGGCCTCGCTG CGCCG CGCCACGCCGTGCGCGGGCTCCG CTTCACCAGCGAGGGAGCGGGCGGCGCGGACGATCCAGGCGCACTTCCGCCGCTTCCTGGCGCGG GGTCCCGCACGCTGCGCCACCTCAAGGAGCTCTGCCGTCCTCCGGTCCAATGGCCGCCGCGCTCCGGGGCTCCCTCTCCGGGCGAGGCAGGGTGGGCGACCCCG CGCCATTTCTGAGGCCG CATGG CCTCCTCTTCCATCTCGACTCGATCCAGGGCGGTGACCCGATGATCCGTGAGGGAAAGCGCGCGGTGAGCCGGGAGCTTACCCGGATCTTGGAGTTTGTTGATAAGGTGCTAGATCAAAGAGCATGGGGCAGATGGCAATGAATGGCGAATTGGATTGTAAAGAATACCATGAAGGTTG AATGCCG ATTTGCGG ]
consensusID : consensus_4072#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence
[TGGGGAGATGGCAATGAATGGCGAATTGGATTGTAAAGACTACCATGAAGGTTGCAATGCCGCATNTGCGGCTAATCCGTNAGCGATGAACAAGAAGAAGGTAGGTTTCTGTGGTAATGGTAAAGTCCAAGAGCTGCATGATGAGGCTGAGCAAGAGCATGGCAGTGATGCTGATGAGAGCTCTGAGACCTCGAGCTTTGCTGAAGCTGAGGCGAGGAAGCGCTCAAACAGTAAGAGGGGTGCTCATGCCAAGCCCGGGCCTGCGGCGCCAATGCCTGTGTACATGGAGCCGAGAAGGATTGACGAGGAGAGGAGACAACCTGTGGTTCGCATCCTGCGATGCAATTTGAGGTTTAGAATTATGTGGATTGTCATGGTGTTGTTACATTCCTACCGTTGTTTTTTCACTGATATTTCCTGAGAAGAGTTTAGAACTTTTCAGATGGTAGAGTTTGTGCTGCAGCTATGATCTTTGGAACTAGGAGCCTTAGCCTGCTGTATGCTCAAATTCCCTGTGTGTTCATTGCCTTTGTTGCTGGGTTATACAATTGCCCTGTTAGCTTTAGCATCGATAATTCTAGCTTGGATCATTTTGTGCACTAAAAATACCCTGCTTGAAGTCATCATGTGGGATCTTGGATTAATCTGTCAATCATGTCCATTTTGATTAATCGAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA760854 [TGGGGAGATGGCAATGAATGGCGAATTGGATTGTAAAGACTACCATGAAGGTTGCAATGCCGCATNTGCGGCTAATCCGTNAGCGATGAACAAGAAGAAGGTAGGTTTCTGTGGTAATGGTAAAGTCCAAGAGCTGCATGATGAGGCTGAGCAAGAGCATGGCAGTGATGCTGATGAGAGCTCTGAGACCTCGAGCTTTGCTGAAGCTGAGGCGAGGAAGCGCTCAAACAGTAAGAGGGGTGCTCATGCCAAGCCCGGGCCTGCGGCGCCAATGCCTGTGTACATGGAGCCGAGAAGGATTGACGAGGAGAGGAGACAACCTGTGGTTCGCATCCTGCGATGCAATTTGAGGTTTAGAATTATGTGGATTGTCATGGTGTTGTTACATTCCTACCGTTGTTTTTTCACTGATATTTCCTGAGAAGAGTTTAGAACTTTTCAGATGGTAGAGTTTGTGCTGCAGCTATGATCTTTGGAACTAGGAGCCTTAGCCTGCTGTATGCTCAAATTCCCTGTGTGTTCATTGCCTTTGTTGCTGGGTTATACAATTGCCCTGTTAGCTTTAGCATCGATAATTCTAGCTTGGATCATTTTGTGCACTAAAAATACCCTGCTTGAAGTCATCATGTGGGATCTTGGATTAATCTGTCAATCATGTCCATTTTGATTAATCGAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4072#0 CCCCGCCGCCGCTGCCGCCGCGCCGATCTGATCCGCAGAAATGCCTCGTCACCACCACCA 60
consensus_4072#1 ------------------------------------------------------------
consensus_4072#0 CGACCCGCCTCCGCCTCCGCCCGCCTGCTGCTCCTGCTGCTGCGGCTGCGACGGCGGCTG 120
consensus_4072#1 ------------------------------------------------------------
consensus_4072#0 CTACCCCGCGCCGACCAGCTACTACTACCCCGTGCCGCCCCCGCCCCCGCCCGCGCCAAC 180
consensus_4072#1 ------------------------------------------------------------
consensus_4072#0 CTCCGCCTCCGACCACCTCCTCCACGCCATCGCGGCCCATCTCCTCCTCGGCTCCGCGCC 240
consensus_4072#1 ------------------------------------------------------------
consensus_4072#0 CCCGCCCCCGGCCCCGACTCCCCCGCAGCCGCAGACCCAGCCTCCGCCGCCGCCGCCGCC 300
consensus_4072#1 ------------------------------------------------------------
consensus_4072#0 GCCGCCCACCTCCGCGGCGCACCACGCGTACCACTACCAGTACCAGTACCAGTACGAGCA 360
consensus_4072#1 ------------------------------------------------------------
consensus_4072#0 GCCCAAACCCCATCAGTATCCGCAGCCGCAGCAGGCCAACCCGTCGGACCACAGCCACGC 420
consensus_4072#1 ------------------------------------------------------------
consensus_4072#0 CGTGCTCCACTCGCTCCTGCGCCGCGTGGCCGCGCTCGAGTCCACCCTCCCGCGCTGCTT 480
consensus_4072#1 ------------------------------------------------------------
consensus_4072#0 CGCCTCGCCGCCCGTGCCGCCCCCGCTCCACCGGAACCCTCGCCACCGCCCCCGCGCGGC 540
consensus_4072#1 ------------------------------------------------------------
consensus_4072#0 CGCGCACCGGGAGGAGGAGGACGACGAGGAGGAGGAGGACGACGACGAGGATGCACCGGC 600
consensus_4072#1 ------------------------------------------------------------
consensus_4072#0 CTCGCTGCCGCCGCCGCCACGCCGTGCGCGGGCTCCGCCTTCACCAGCGAGGGAGCGGGC 660
consensus_4072#1 ------------------------------------------------------------
consensus_4072#0 GGCGCGGACGATCCAGGCGCACTTCCGCCGCTTCCTGGCGCGGCGGTCCCGCACGCTGCG 720
consensus_4072#1 ------------------------------------------------------------
consensus_4072#0 CCACCTCAAGGAGCTCGCCGTCCTCCGGTCCAAGGCCGCCGCGCTCCGGGGCTCCCTCTC 780
consensus_4072#1 ------------------------------------------------------------
consensus_4072#0 CGGGCGAGGCAGGGTGGGCGACCCCGCCGCCATTTCTGAGGCCGCCATGGCCCTCCTCTT 840
consensus_4072#1 ------------------------------------------------------------
consensus_4072#0 CCATCTCGACTCGATCCAGGGCGGTGACCCGATGATCCGTGAGGGAAAGCGCGCGGTGAG 900
consensus_4072#1 ------------------------------------------------------------
consensus_4072#0 CCGGGAGCTTACCCGGATCTTGGAGTTTGTTGATAAGGTGCTAGTCAAAGAGCATGGGGA 960
consensus_4072#1 ------------------------------------------------------TGGGGA 6
******
consensus_4072#0 GATGGCAATGAATGGCGAATTGGATTGTAAAGACTACCATGAAGGTTGCAATGCCGCATT 1020
consensus_4072#1 GATGGCAATGAATGGCGAATTGGATTGTAAAGACTACCATGAAGGTTGCAATGCCGCATN 66
***********************************************************
consensus_4072#0 TGCGGCTAATCCGTCAGCGATGAACAAGAAGAAGGTAGGTTTCTGTGGTAATGGTAAAGT 1080
consensus_4072#1 TGCGGCTAATCCGTNAGCGATGAACAAGAAGAAGGTAGGTTTCTGTGGTAATGGTAAAGT 126
************** *********************************************
consensus_4072#0 CCAAGAGCTGCATGATGAGGCTGAGCAAGAGCATGGCAGTGATGCTGATGAGAGCTCTGA 1140
consensus_4072#1 CCAAGAGCTGCATGATGAGGCTGAGCAAGAGCATGGCAGTGATGCTGATGAGAGCTCTGA 186
************************************************************
consensus_4072#0 GACCTCGAGCTCTGCTGAAGCTGAGGCGAGGAAGCGCTCAAACAGTAAGAGGGGTGCTCA 1200
consensus_4072#1 GACCTCGAGCTTTGCTGAAGCTGAGGCGAGGAAGCGCTCAAACAGTAAGAGGGGTGCTCA 246
*********** ************************************************
consensus_4072#0 TGCCAAGCCCGGGCTTGCGGCGCCAATGCCTGTGTACATGGAGCCGAGAAGGATTGACGA 1260
consensus_4072#1 TGCCAAGCCCGGGCCTGCGGCGCCAATGCCTGTGTACATGGAGCCGAGAAGGATTGACGA 306
************** *********************************************
consensus_4072#0 GGAGAGGAGATAACCTGTGGTTCGCATCCTGCGATGCAATTTGAGGTTTAGAATTATGTG 1320
consensus_4072#1 GGAGAGGAGACAACCTGTGGTTCGCATCCTGCGATGCAATTTGAGGTTTAGAATTATGTG 366
********** *************************************************
consensus_4072#0 GATTGTCATGGTGTTGTTACATTCCTACCGTTGTTTTTTCACTGATATTTCCTGAGAAGA 1380
consensus_4072#1 GATTGTCATGGTGTTGTTACATTCCTACCGTTGTTTTTTCACTGATATTTCCTGAGAAGA 426
************************************************************
consensus_4072#0 GTTTAGAACTTTTCAGATGGTAGAGTTTGTGCTGCAGCTATGATCTTTGGAACTAGGAGC 1440
consensus_4072#1 GTTTAGAACTTTTCAGATGGTAGAGTTTGTGCTGCAGCTATGATCTTTGGAACTAGGAGC 486
************************************************************
consensus_4072#0 CTTAGCCTGCTGTATGCTCAAATTCCCTGTGTGTTCATTGCCTTTGTTGCTGGGTTATAC 1500
consensus_4072#1 CTTAGCCTGCTGTATGCTCAAATTCCCTGTGTGTTCATTGCCTTTGTTGCTGGGTTATAC 546
************************************************************
consensus_4072#0 AATTGCACTGTTAGCTTTAGCATCGATAATTCTAGCTTGGATCATTTTGTGCACTAAAGA 1560
consensus_4072#1 AATTGCCCTGTTAGCTTTAGCATCGATAATTCTAGCTTGGATCATTTTGTGCACTAAAAA 606
****** *************************************************** *
consensus_4072#0 TACCCTGCTTGATGTCATCATGTGGGATCTTGGATTAATCTGTCAATCATGTCCATTTTG 1620
consensus_4072#1 TACCCTGCTTGAAGTCATCATGTGGGATCTTGGATTAATCTGTCAATCATGTCCATTTTG 666
************ ***********************************************
consensus_4072#0 ATTAATCGAAATTCCCTGTGCTGCAG-- 1646
consensus_4072#1 ATTAATCGAAAAAAAAAAAAAAAAAAAA 694
*********** *
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||