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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4101#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 613 fasta sequence
[CCACCGCGATTCNCGAGGGAGAATAACGGTTCCNTCCGGGCCAAACGCAACCTTCGCTTGGNTTTTGGCCNGGGCCCGAACCGCCGAGGGTNGGGGGNGNTCCGATTNGAAAAGTCGGGTCCTGTTGACNGGGNNAACNTCCGCNNCGCCGCCGNAGCAAAACCGGGGGGGAAGAA-GACAAGACGCCCACCACNACAATGGCTTNAAAGCCGCNGCAACCCCCCGGCGGGCGGCGGANGAGGCGGCGGNTTTTTCGTTGCTGCTGCAAGAGCTGGAGGAGTTGATCGGCGCGTCGGCCTTCCCGAACATTGGAGAGCTGGGGGANGATCTGATTCTGACCTCGATTTCTCNTCTCTTTTTTTTTCTCCCATAAAATTTCAGGG--TTTTTTTTGGTCCGTCCGATGCGAGGATCGGACGGCTGCGGGTTGTCCTCCCCTTAGCCAAGCTGATGATGATGTCGTAGCCAAGTAGCGTAGCACTAGAAACCAAATCAGCCTCTCTCTCTCGCTCTCTTTTTCTCATGGGGTAATTATAACTCCTTTCTGTTNGTNGCTCATCATNGCCTTCATTTAGTTAACGAGTTTAATGATATGCTTAATTAGTTNTAAAAAAA]
[+] EMBL AA753936 [CCACCGCGATTCNCGAGGGAGAATAACGGTTCCNTCCGGGCCAAACGCAACCTTCGCTTGGNTTTTGGCCNGGGCCCGAACCGCCGAGGGTNGGGGGNGNTCCGATTNGAAAAGTCGGGTCCTGTTGACNGGGNNAACNTCCGCNNCGCCGCCGNAGCAAAACCGGGGGGGAAGAA GACAAGACGCCCACCACNACAATGGCTTNAAAGCCGCNGCAACCCCCCGGCGGGCGGCGGANGAGGCGGCGGNTTTTTCGTTGCTGCTGCAAGAGCTGGAGGAGTTGATCGGCGCGTCGGCCTTCCCGAACATTGGAGAGCTGGGGGANGATCTGATTCTGACCTCGATTTCTCNTCTCTTTTTTTTTCTCCCATAAAATTTCAGGG TTTTTTTTGGTCCGTCCGATGCGAGGATCGGACGGCTGCGGGTTGTCCTCCCCTTAGCCAAGCTGATGATGATGTCGTAGCCAAGTAGCGTAGCACTAGAAACCAAATCAGCCTCTCTCTCTCGCTCTCTTTTTCTCATGGGGTAATTATAACTCCTTTCTGTTNGTNGCTCATCATNGCCTTCATTTAGTTAACGAGTTTAATGATATGCTTAATTAGTTNTAAAAAAA]
[+] EMBL AU172536 [ cGGAAGAACGACAAGACGCCCACCACCACAATGGCCTCCACGCCGCCGC AGCCGCCGGC GGCGGCGGACGAGGCGGCGGCGTCGTCGCTGCTGCTGCAAGAGCTGGAGGAGTTGATCGGCGCGTCGGCCTTCCCG ACATTGGAGAGCTGGGGGATGATCTGATTCTGACCTCGATTTCTCCTCTCTTTTTTTTTCTCCCATAAAATTTCAGGGTTTTTTTTTTGGTCCGTCCGATGCGAGGATCGGACGGCTGCGGGTTGTCCTCCCCTTAGCCAAGCTGATGATGATGTCGTAGCCAAGTAGCGTAGCACTAGAAACCAAATCAGCCTCTCTCTCTCGCTCTCTTTTTCTCATGGTGTAATTATTACTCCTTTCTGTTTGTTGCTCATCATTGCCTTCATTTAGTTAACGAGTTTAATGATATGCTTAATTAGTTCTAAAAA ]
consensusID : consensus_4101#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence
[GAGTGAGCGAGTGACGACTACTGGACGTCGGAAATATATATGGTAATGGGAATGGGTAGGCGAGCCGCCGCAGCCACAGCCGGGGCGGAAGAACGACAAGACGTCCACCACCACAATGGCCTCCACGCCGCCGCAGCCGCCGGCGGGCGNAACGGAGGCGGCGGCGTCGTCGCTGCTGCTGCAAGAGCTGGAGGAGTTGATCGGCGCGTCGGCCTTCCCGACATTGGAGANCTGGGGGATGATCTGATTCTTGACCTCGATTTCTCCTCTCTTTTTTTTTCTCCCATAAAATTTCAGGGGTTTTTTTTN]
[+] EMBL AU069682 [GAGTGAGCGAGTGACGACTACTGGACGTCGGAAATATATATGGTAATGGGAATGGGTAGGCGAGCCGCCGCAGCCACAGCCGGGGCGGAAGAACGACAAGACGTCCACCACCACAATGGCCTCCACGCCGCCGCAGCCGCCGGCGGGCGNAACGGAGGCGGCGGCGTCGTCGCTGCTGCTGCAAGAGCTGGAGGAGTTGATCGGCGCGTCGGCCTTCCCGACATTGGAGANCTGGGGGATGATCTGATTCTTGACCTCGATTTCTCCTCTCTTTTTTTTTCTCCCATAAAATTTCAGGGGTTTTTTTTN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4101#0 CCACCGCGATTCNCGAGGGAGAATAACGGTTCCNTCCGGGCCAAACGCAACCTTCGCTTG 60
consensus_4101#1 ------------------------------------------------------------
consensus_4101#0 GNTTTTGGCCNGGGCCCGAACCGCCGAGGGTNGGGGGNGNTCCGATTNGAAAAGTCGGGT 120
consensus_4101#1 -----------------GAGTGAGCGAGTGACGACTACTGGACG-TCGGAAATATATA-- 40
** **** * * ** * **** *
consensus_4101#0 CCTGTTGACNGGGNNAACNTCCGCNNCGCCGCCGNAGCAA-AACCGGGGGGGAAGAA-GA 178
consensus_4101#1 --TGGTAATGGGAATGG-GTAGGCGA-GCCGCCGCAGCCACAGCCGGGGCGGAAGAACGA 96
** * * ** * ** ******* *** * * ****** ******* **
consensus_4101#0 CAAGACGCCCACCACNACAATGGCTTNAAAGCCGCNGCAACCCCCCGGCGGGCGGCGGAN 238
consensus_4101#1 CAAGACGTCCACCACCACAATGGCCTCCACGCCGCCGCAGCCGCC-GGCGGGCGN-AACG 154
******* ******* ******** * * ***** *** ** ** ********
consensus_4101#0 GAGGCGGCGGNTTTTTCGTTGCTGCTGCAAGAGCTGGAGGAGTTGATCGGCGCGTCGGCC 298
consensus_4101#1 GAGGCGGCGGCGTCGTCGCTGCTGCTGCAAGAGCTGGAGGAGTTGATCGGCGCGTCGGCC 214
********** * *** *****************************************
consensus_4101#0 TTCCCGAACATTGGAGAGCTGGGGGANGATCTGATTCT-GACCTCGATTTCTCNTCTCTT 357
consensus_4101#1 TTCCCGA-CATTGGAGANCTGGGGGATGATCTGATTCTTGACCTCGATTTCTCCTCTCTT 273
******* ********* ******** *********** ************** ******
consensus_4101#0 TTTTTTTCTCCCATAAAATTTCAGGGTTTTTTTTGGTCCGTCCGATGCGAGGATCGGACG 417
consensus_4101#1 TTTTTTTCTCCCATAAAATTTCAGGGGTTTTTTTTN------------------------ 309
************************** *******
consensus_4101#0 GCTGCGGGTTGTCCTCCCCTTAGCCAAGCTGATGATGATGTCGTAGCCAAGTAGCGTAGC 477
consensus_4101#1 ------------------------------------------------------------
consensus_4101#0 ACTAGAAACCAAATCAGCCTCTCTCTCTCGCTCTCTTTTTCTCATGGGGTAATTATAACT 537
consensus_4101#1 ------------------------------------------------------------
consensus_4101#0 CCTTTCTGTTNGTNGCTCATCATNGCCTTCATTTAGTTAACGAGTTTAATGATATGCTTA 597
consensus_4101#1 ------------------------------------------------------------
consensus_4101#0 ATTAGTTNTAAAAAAA 613
consensus_4101#1 ----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||