Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4122 cluster # 4122       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4122#0 length = 3586 sequences # 2  
 consensus_4122#1 length = 436 sequences # 1  
consensusID : consensus_4122#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 3586
fasta sequence 
                              [GCTGCGTTTACGGAAACCACGAGTTTACGCCTTCACCGACCGTTACGCTGCCGCTTTGCACTTTCCCCTCCCCGTCCCCCGCCGCGCCGCGTGTCCGCGTCGGTGTCGTGGTCATCCGCCGCCGCCGCCGCCGCCGCTCTCGCAATGGCGAGGCCGTTGCCGAACCAGGCCGTGGCACGGACGTCCGCCACCTCCCTCCGTCACTTCCCTGGGCACTCGAAGCCGTCGCTGCCGCTGTCCGCGCCGGCTCTCCGGAAAGCCGCGGCGGCGCTCCTGCTCGCGGCGGCCGTGGCGCTGCCCTGTGCCGTGCTGTACCGCGCCGCGGTGTTGGACGCGGTCCAACCGGTGCAGGTGGGATGGGATCGCGGGCCGTGGTGGGAGCGGGGCCAGCCGCCCCCTGCTGTTGTGGTCCCCGAGGAGGACGGCGACGTCGATCCCGCTGCGGCCGACGATCTGGACAGTGACGACCTCAAACTTGAGCAAGTTCTGCAGGAGGCCTCCATGGATAATAAGACCATTATATTGACAACACTGAATGCTGCATGGGCTTCTTCAGGCTCGGTCATTGATCTTTTTATCGACAGTTTTCGCCGTGGTGTTAGGACTAGCTCACTTTTGAGACATCTTGTGATAATAACATTTGATTGGAAGGCTTACAAAAGGTGTATGAAGATCCACGCATACTGCTTTGCTCTTGCAACCGAGAATATGGATTTTTCTCAAGAGAAGAGGTTTCTGACTGCTGGTTATCTGGACATGATGTGGAAAAGGCTGGATTTCTTGCGGCTAGTTCTTGAAAAAGGTTACAGCTTCATTTTCTCGGATGCAGACATCACGTGGTTCCGCAATCCTTTTCCTCATTTCTATCCTGATGGAGATTTTCAGATTGCATGTGATCACTATGTAGGCAATGCAACTGATTTGGGGAACATAGCAAACGGGGGATTTAACTATGTGAGGTCAAACAATCAAAGTATAGAATTCTACAAGTTTTGGTATTCTTCGCGACTGAGATATCCTGGCTATCATGATCAGGATGTATTTAATTTTATAAAGCATGATCCTTACATTACAGATATTGGACTGAAAATTAAGTTCCTAAGCACTACATACTTTGGTGGCATTTGTGAACCCAGCAGAGATTTAAACAAGGTTTGCACTATGCATGCAAACTGTTGCATTGGATTACAGAGCAAACTTCATGATCTAAGAGTCATAATGGAAGACTGGAGGAATTATATGTCTATGCCACCAAGCTTAAAAAGATTTGGGGCATTGTCATGGGGGGTACCACAAAATTGCAGTCTTTCATTGCTTAACCAGTGAGACATGCTTTTGGGGGTGCAAACTGTATAAAACTGTAGAAAATGTCAATTTCTGAGCATAATTGTCAGAAAGAGAAAAATACTTTGAAGGGAAAAAGGGGCTACTACATCATCAACTTTGCCAACTTTGATGCCTTCAGTTAGGCCTGCTCATGGATTGGATCCTAATGGATTTAATGGATTGGATTTCAGTGTGGGTTGGCTTTGGATGGGTTGAAATGGATTGATGCAGCTAATGGGCTGGGGTGGGTTGGATGGAGATGTAAAACGGTTTGGATTGGATTGGTTTTGGTTAGGAAAGTTTGGGTAGAAAGTGGATTCAGCCCATGGGCTTCCACTGGATTGTCCCCAAATCACATTCGTCTTCCTATGACATTGACAGCCACGGCACCACCACCACTTCGCTTGACGCCGCCGGTGGCTTGCCACCTTCCTCTCTGCCTCCCACACCCTTCTGTGTCACTACTCGTTGCAACCGCTGGCAGGAGCATGGCGGCGAGATCACCACCGGCTCATCATCATCATCCTGCCGCCGCCGCCGGCGACCTCTGCCCAGCATGTGGGCCAGCTGCTCTGACTCGCTGTTCGTGCTCGGTGCGGCACCGCTGCTGGAGGGGTGCGTTGGCATGGGTTTCAACCTCAACCTTGGCCTGCCTGGTCTGGGCCACCATGTCACCAGCGGCGCTGCAGACGAGGTGGCTGGTAGCTGTCGGCCTCCATGGCCTTAGCCCCAGATGGGGCAGCGGATCATTGGCACTAACGATGACGACGTCGTCACCTCTGCTCTGTGGAGACAGCAGCAAAAATGTGGAGACATGGAAGCTGGCGGCCGGAGGTAGGGGCGGAGGCAGGCCTAGGGCGGCCTGCCTCCAAAAACTTGCTTAAATTTTGTTGATTCACCATGTAATTTTTTCATAAAACTAATACTCCATTAGTCGAGCCCTACCTTAGGCCTAGTCTTGTATAATTTCTGGCTCCGCCACTGGCCGGAGGAGGTGCTCCCATGTGGCCGGAGTTCTCTGTGGCGGCGCCGGTGGTCGGCTGGGCGCTGCAACCACAGCTTCTGTGATACTAAAGTTTCTGTGATACTAAAGTGGATATATGCATCCATGCATGGAACATGTGTATATTGGTAGTATACACGCATGTATATGCGCATGCATGTATATGTGTGTA-CGTGCGTGAAGAGAGTTGAACCAAGGATTGGACACTGCGGTTTCAGTCCATGGATTTAGAATTGGTTGAACCCAC-TTAACTAGAATGG-GTTGGAC-TCGTTTGG--TTCAAAACTTTTTATGGGTTGGATTGGTTTGGGGCTTGAAGAAGGAGAAGTGGTCTGGGTTGAATTGGAAGGATGCTTGTTACAGAAGTGGGTTGGGGCAGTAATGGATTGGATTTCCACCCATTAGCACCCCTACCTTCAGTAATATTGTGTATCTTTCGGAACATAACATTGGGAAAGGTGCAGGCTGCTTTCTGGTATCCCTTTGATTATTCATAGTTCTTATCTCCTTTTTGTTTTAGTTCTAACATGTTTGTTGATCTGGAACTGCAGCCATGCAAATATGCGATTTTAAATTGCATAAACTGGTAGAAGTTTCATCTGCGCGAAAAGCACTGCAAGAAACACAGCTGCATGACCATGGCAAGAATACTTGGCATCTGAACATTGGTACGTATCCCAGCTGTTGCAAGTTTGCAAAAACACAGTACAGCATAATGTTTAGGTGCCCGTTTTTCTCTCATTTTAGCAGACTGAAATTATTTGTTAATAGATACGGGGGGATTCCCCCAATGCTCTAATGCTTGGTTGCCTGAACCTGTCCATCTATAGGGCCAGTCTCCTTCTCCTCGTCTCTCTTATCTACCTTTCTTCTCTCATTCTGTCATTCACATTACTAAAAGGTGCGATGAGCCGTCTTATTTGTTGGTTGGCGTTGTACACTTGTGCATGCCTTTGTCTAAAGTCTCTCCCTGTCCTTTTGGAACGGTTTCGCTAAAAAAACTTCCAACAGTTTTATTTTGGGGCAACTTCTGATTTCCTGGCCATCTGATGTGCACGGAGATTCGTGAAGGCGCGCTGTGGGTCCGGTGGATCGAACTCAGGGTCCCTGCTTCGCACCAAGCACTCCTTAACAGCTGAGATATGCATGCTTTTCATTAGTTACATGTATTACACTGTAACTTTAGTATAGTTGCAATGTAATTACACTAAAATTGTACTATACTTACATTTGAAAAATTTTACGCAATAAACTTGCGAC]

[+] EMBL AK066567             [GCTGCGTTTACGGAAACCACGAGTTTACGCCTTCACCGACCGTTACGCTGCCGCTTTGCACTTTCCCCTCCCCGTCCCCCGCCGCGCCGCGTGTCCGCGTCGGTGTCGTGGTCATCCGCCGCCGCCGCCGCCGCCGCTCTCGCAATGGCGAGGCCGTTGCCGAACCAGGCCGTGGCACGGACGTCCGCCACCTCCCTCCGTCACTTCCCTGGGCACTCGAAGCCGTCGCTGCCGCTGTCCGCGCCGGCTCTCCGGAAAGCCGCGGCGGCGCTCCTGCTCGCGGCGGCCGTGGCGCTGCCCTGTGCCGTGCTGTACCGCGCCGCGGTGTTGGACGCGGTCCAACCGGTGCAGGTGGGATGGGATCGCGGGCCGTGGTGGGAGCGGGGCCAGCCGCCCCCTGCTGTTGTGGTCCCCGAGGAGGACGGCGACGTCGATCCCGCTGCGGCCGACGATCTGGACAGTGACGACCTCAAACTTGAGCAAGTTCTGCAGGAGGCCTCCATGGATAATAAGACCATTATATTGACAACACTGAATGCTGCATGGGCTTCTTCAGGCTCGGTCATTGATCTTTTTATCGACAGTTTTCGCCGTGGTGTTAGGACTAGCTCACTTTTGAGACATCTTGTGATAATAACATTTGATTGGAAGGCTTACAAAAGGTGTATGAAGATCCACGCATACTGCTTTGCTCTTGCAACCGAGAATATGGATTTTTCTCAAGAGAAGAGGTTTCTGACTGCTGGTTATCTGGACATGATGTGGAAAAGGCTGGATTTCTTGCGGCTAGTTCTTGAAAAAGGTTACAGCTTCATTTTCTCGGATGCAGACATCACGTGGTTCCGCAATCCTTTTCCTCATTTCTATCCTGATGGAGATTTTCAGATTGCATGTGATCACTATGTAGGCAATGCAACTGATTTGGGGAACATAGCAAACGGGGGATTTAACTATGTGAGGTCAAACAATCAAAGTATAGAATTCTACAAGTTTTGGTATTCTTCGCGACTGAGATATCCTGGCTATCATGATCAGGATGTATTTAATTTTATAAAGCATGATCCTTACATTACAGATATTGGACTGAAAATTAAGTTCCTAAGCACTACATACTTTGGTGGCATTTGTGAACCCAGCAGAGATTTAAACAAGGTTTGCACTATGCATGCAAACTGTTGCATTGGATTACAGAGCAAACTTCATGATCTAAGAGTCATAATGGAAGACTGGAGGAATTATATGTCTATGCCACCAAGCTTAAAAAGATTTGGGGCATTGTCATGGGGGGTACCACAAAATTGCAGTCTTTCATTGCTTAACCAGTGAGACATGCTTTTGGGGGTGCAAACTGTATAAAACTGTAGAAAATGTCAATTTCTGAGCATAATTGTCAGAAAGAGAAAAATACTTTGAAGGGAAAAAGGGGCTACTACATCATCAACTTTGCCAACTTTGATGCCTTCAGTTAGGCCTGCTCATGGATTGGATCCTAATGGATTTAATGGATTGGATTTCAGTGTGGGTTGGCTTTGGATGGGTTGAAATGGATTGATGCAGCTAATGGGCTGGGGTGGGTTGGATGGAGATGTAAAACGGTTTGGATTGGATTGGTTTTGGTTAGGAAAGTTTGGGTAGAAAGTGGATTCAGCCCATGGGCTTCCACTGGATTGTCCCCAAATCACATTCGTCTTCCTATGACATTGACAGCCACGGCACCACCACCACTTCGCTTGACGCCGCCGGTGGCTTGCCACCTTCCTCTCTGCCTCCCACACCCTTCTGTGTCACTACTCGTTGCAACCGCTGGCAGGAGCATGGCGGCGAGATCACCACCGGCTCATCATCATCATCCTGCCGCCGCCGCCGGCGACCTCTGCCCAGCATGTGGGCCAGCTGCTCTGACTCGCTGTTCGTGCTCGGTGCGGCACCGCTGCTGGAGGGGTGCGTTGGCATGGGTTTCAACCTCAACCTTGGCCTGCCTGGTCTGGGCCACCATGTCACCAGCGGCGCTGCAGACGAGGTGGCTGGTAGCTGTCGGCCTCCATGGCCTTAGCCCCAGATGGGGCAGCGGATCATTGGCACTAACGATGACGACGTCGTCACCTCTGCTCTGTGGAGACAGCAGCAAAAATGTGGAGACATGGAAGCTGGCGGCCGGAGGTAGGGGCGGAGGCAGGCCTAGGGCGGCCTGCCTCCAAAAACTTGCTTAAATTTTGTTGATTCACCATGTAATTTTTTCATAAAACTAATACTCCATTAGTCGAGCCCTACCTTAGGCCTAGTCTTGTATAATTTCTGGCTCCGCCACTGGCCGGAGGAGGTGCTCCCATGTGGCCGGAGTTCTCTGTGGCGGCGCCGGTGGTCGGCTGGGCGCTGCAACCACAGCTTCTGTGATACTAAAGTTTCTGTGATACTAAAGTGGATATATGCATCCATGCATGGAACATGTGTATATTGGTAGTATACACGCATGTATATGCGCATGCATGTATATGTGTGTA CGTGCGTGAAGAGAGTTGAACCAAGGATTGGACACTGCGGTTTCAGTCCATGGATTTAGAATTGGTTGAACCCAC TTAACTAGAATGG GTTGGAC TCGTTTGG  TTCAAAACTTTTTATGGGTTGGATTGGTTTGGGGCTTGAAGAAGGAGAAGTGGTCTGGGTTGAATTGGAAGGATGCTTGTTACAGAAGTGGGTTGGGGCAGTAATGGATTGGATTTCCACCCATTAGCACCCCTACCTTCAGTAATATTGTGTATCTTTCGGAACATAACATTGGGAAAGGTGCAGGCTGCTTTCTGGTATCCCTTTGATTATTCATAGTTCTTATCTCCTTTTTGTTTTAGTTCTAACATGTTTGTTGATCTGGAACTGCAGCCATGCAAATATGCGATTTTAAATTGCATAAACTGGTAGAAGTTTCATCTGCGCGAAAAGCACTGCAAGAAACACAGCTGCATGACCATGGCAAGAATACTTGGCATCTGAACATTGGTACGTATCCCAGCTGTTGCAAGTTTGCAAAAACACAGTACAGCATAATGTTTAGGTGCCCGTTTTTCTCTCATTTTAGCAGACTGAAATTATTTGTTAATAGATACGGGGGGATTCCCCCAATGCTCTAATGCTTGGTTGCCTGAACCTGTCCATCTATAGGGCCAGTCTCCTTCTCCTCGTCTCTCTTATCTACCTTTCTTCTCTCATTCTGTCATTCACATTACTAAAAGGTGCGATGAGCCGTCTTATTTGTTGGTTGGCGTTGTACACTTGTGCATGCCTTTGTCTAAAGTCTCTCCCTGTCCTTTTGGAACGGTTTCGCTAAAAAAACTTCCAACAGTTTTATTTTGGGGCAACTTCTGATTTCCTGGCCATCTGATGTGCACGGAGATTCGTGAAGGCGCGCTGTGGGTCCGGTGGATCGAACTCAGGGTCCCTGCTTCGCACCAAGCACTCCTTAACAGCTGAGATATGCATGCTTTTCATTAGTTACATGTATTACACTGTAACTTTAGTATAGTTGCAATGTAATTACACTAAAATTGTACTATACTTACATTTGAAAAATTTTACGCAATAAACTTGCGAC]
[+] EMBL CA765486             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GGCCTAGGGCGGCCTGCCTCCAAAAACTTGCTTAAATTTTGTTGATTCACCATGTAATTTTTTCATAAAACTAATACTCCATTAGTCGAGCCCTACCTTAGGCCTAGTCTTATATAATTTCTGGCTCTGCCACTGGCCGGAGGAGGTGCTCCCATGTGGCCGNAGTTCTCAGTGGCGGCGCCGGTGGTCGGNTGGNCGCTGCAACCACAGCTTCTGTGAGACTAAAGNTTCTGTNATACTAAAGTGGATATATGCATCCATGCATGGAACATGTNTATATTGNTAGTATACACGCATGTATATGCGCATGCATGTATATGTATGTACCGTGCGTGAAGAGAGTTGANCCAANGATTGGACACTGCGNTTTCAGTCCATGGATTTAGAATTGGTTGAACCCACTTTAACTAGAATGGATTTGNACTTCNTTTTGNCTTCAAAACTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]




>consensus_4122#0
GCTGCGTTTACGGAAACCACGAGTTTACGCCTTCACCGACCGTTACGCTGCCGCTTTGCA
CTTTCCCCTCCCCGTCCCCCGCCGCGCCGCGTGTCCGCGTCGGTGTCGTGGTCATCCGCC
GCCGCCGCCGCCGCCGCTCTCGCAATGGCGAGGCCGTTGCCGAACCAGGCCGTGGCACGG
ACGTCCGCCACCTCCCTCCGTCACTTCCCTGGGCACTCGAAGCCGTCGCTGCCGCTGTCC
GCGCCGGCTCTCCGGAAAGCCGCGGCGGCGCTCCTGCTCGCGGCGGCCGTGGCGCTGCCC
TGTGCCGTGCTGTACCGCGCCGCGGTGTTGGACGCGGTCCAACCGGTGCAGGTGGGATGG
GATCGCGGGCCGTGGTGGGAGCGGGGCCAGCCGCCCCCTGCTGTTGTGGTCCCCGAGGAG
GACGGCGACGTCGATCCCGCTGCGGCCGACGATCTGGACAGTGACGACCTCAAACTTGAG
CAAGTTCTGCAGGAGGCCTCCATGGATAATAAGACCATTATATTGACAACACTGAATGCT
GCATGGGCTTCTTCAGGCTCGGTCATTGATCTTTTTATCGACAGTTTTCGCCGTGGTGTT
AGGACTAGCTCACTTTTGAGACATCTTGTGATAATAACATTTGATTGGAAGGCTTACAAA
AGGTGTATGAAGATCCACGCATACTGCTTTGCTCTTGCAACCGAGAATATGGATTTTTCT
CAAGAGAAGAGGTTTCTGACTGCTGGTTATCTGGACATGATGTGGAAAAGGCTGGATTTC
TTGCGGCTAGTTCTTGAAAAAGGTTACAGCTTCATTTTCTCGGATGCAGACATCACGTGG
TTCCGCAATCCTTTTCCTCATTTCTATCCTGATGGAGATTTTCAGATTGCATGTGATCAC
TATGTAGGCAATGCAACTGATTTGGGGAACATAGCAAACGGGGGATTTAACTATGTGAGG
TCAAACAATCAAAGTATAGAATTCTACAAGTTTTGGTATTCTTCGCGACTGAGATATCCT
GGCTATCATGATCAGGATGTATTTAATTTTATAAAGCATGATCCTTACATTACAGATATT
GGACTGAAAATTAAGTTCCTAAGCACTACATACTTTGGTGGCATTTGTGAACCCAGCAGA
GATTTAAACAAGGTTTGCACTATGCATGCAAACTGTTGCATTGGATTACAGAGCAAACTT
CATGATCTAAGAGTCATAATGGAAGACTGGAGGAATTATATGTCTATGCCACCAAGCTTA
AAAAGATTTGGGGCATTGTCATGGGGGGTACCACAAAATTGCAGTCTTTCATTGCTTAAC
CAGTGAGACATGCTTTTGGGGGTGCAAACTGTATAAAACTGTAGAAAATGTCAATTTCTG
AGCATAATTGTCAGAAAGAGAAAAATACTTTGAAGGGAAAAAGGGGCTACTACATCATCA
ACTTTGCCAACTTTGATGCCTTCAGTTAGGCCTGCTCATGGATTGGATCCTAATGGATTT
AATGGATTGGATTTCAGTGTGGGTTGGCTTTGGATGGGTTGAAATGGATTGATGCAGCTA
ATGGGCTGGGGTGGGTTGGATGGAGATGTAAAACGGTTTGGATTGGATTGGTTTTGGTTA
GGAAAGTTTGGGTAGAAAGTGGATTCAGCCCATGGGCTTCCACTGGATTGTCCCCAAATC
ACATTCGTCTTCCTATGACATTGACAGCCACGGCACCACCACCACTTCGCTTGACGCCGC
CGGTGGCTTGCCACCTTCCTCTCTGCCTCCCACACCCTTCTGTGTCACTACTCGTTGCAA
CCGCTGGCAGGAGCATGGCGGCGAGATCACCACCGGCTCATCATCATCATCCTGCCGCCG
CCGCCGGCGACCTCTGCCCAGCATGTGGGCCAGCTGCTCTGACTCGCTGTTCGTGCTCGG
TGCGGCACCGCTGCTGGAGGGGTGCGTTGGCATGGGTTTCAACCTCAACCTTGGCCTGCC
TGGTCTGGGCCACCATGTCACCAGCGGCGCTGCAGACGAGGTGGCTGGTAGCTGTCGGCC
TCCATGGCCTTAGCCCCAGATGGGGCAGCGGATCATTGGCACTAACGATGACGACGTCGT
CACCTCTGCTCTGTGGAGACAGCAGCAAAAATGTGGAGACATGGAAGCTGGCGGCCGGAG
GTAGGGGCGGAGGCAGGCCTAGGGCGGCCTGCCTCCAAAAACTTGCTTAAATTTTGTTGA
TTCACCATGTAATTTTTTCATAAAACTAATACTCCATTAGTCGAGCCCTACCTTAGGCCT
AGTCTTGTATAATTTCTGGCTCCGCCACTGGCCGGAGGAGGTGCTCCCATGTGGCCGGAG
TTCTCTGTGGCGGCGCCGGTGGTCGGCTGGGCGCTGCAACCACAGCTTCTGTGATACTAA
AGTTTCTGTGATACTAAAGTGGATATATGCATCCATGCATGGAACATGTGTATATTGGTA
GTATACACGCATGTATATGCGCATGCATGTATATGTGTGTACGTGCGTGAAGAGAGTTGA
ACCAAGGATTGGACACTGCGGTTTCAGTCCATGGATTTAGAATTGGTTGAACCCACTTAA
CTAGAATGGGTTGGACTCGTTTGGTTCAAAACTTTTTATGGGTTGGATTGGTTTGGGGCT
TGAAGAAGGAGAAGTGGTCTGGGTTGAATTGGAAGGATGCTTGTTACAGAAGTGGGTTGG
GGCAGTAATGGATTGGATTTCCACCCATTAGCACCCCTACCTTCAGTAATATTGTGTATC
TTTCGGAACATAACATTGGGAAAGGTGCAGGCTGCTTTCTGGTATCCCTTTGATTATTCA
TAGTTCTTATCTCCTTTTTGTTTTAGTTCTAACATGTTTGTTGATCTGGAACTGCAGCCA
TGCAAATATGCGATTTTAAATTGCATAAACTGGTAGAAGTTTCATCTGCGCGAAAAGCAC
TGCAAGAAACACAGCTGCATGACCATGGCAAGAATACTTGGCATCTGAACATTGGTACGT
ATCCCAGCTGTTGCAAGTTTGCAAAAACACAGTACAGCATAATGTTTAGGTGCCCGTTTT
TCTCTCATTTTAGCAGACTGAAATTATTTGTTAATAGATACGGGGGGATTCCCCCAATGC
TCTAATGCTTGGTTGCCTGAACCTGTCCATCTATAGGGCCAGTCTCCTTCTCCTCGTCTC
TCTTATCTACCTTTCTTCTCTCATTCTGTCATTCACATTACTAAAAGGTGCGATGAGCCG
TCTTATTTGTTGGTTGGCGTTGTACACTTGTGCATGCCTTTGTCTAAAGTCTCTCCCTGT
CCTTTTGGAACGGTTTCGCTAAAAAAACTTCCAACAGTTTTATTTTGGGGCAACTTCTGA
TTTCCTGGCCATCTGATGTGCACGGAGATTCGTGAAGGCGCGCTGTGGGTCCGGTGGATC
GAACTCAGGGTCCCTGCTTCGCACCAAGCACTCCTTAACAGCTGAGATATGCATGCTTTT
CATTAGTTACATGTATTACACTGTAACTTTAGTATAGTTGCAATGTAATTACACTAAAAT
TGTACTATACTTACATTTGAAAAATTTTACGCAATAAACTTGCGAC

consensusID : consensus_4122#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence 
                              [GTGGCNTTNTGNAACCCNCNNGAGATTAAAACAAGGTTGCNCTATGCATGCANAAANGTGGCATTGGATTACAGAGCANAACTTCATGAATTNAAGGAGTCATAATGGAAGACTGGAGGNATTATATGTTTATGCCACCNAGCTTAAAAAGATTTGGGGCATTGTCATGGGGGGTACCACAAAATTGCAGGTTTGATGCTACCNTGGAATTTGAGTTTCACATGCTTCTTTTCCCCCNAAATGTTGTGCGAGAAGTACAACTGGTATTCATGTCCTGATTTTTCTTTCTCCTGAATCCTGATGATGTGTCTGATAATTTGGTTTCTTATGCAGTCTTTCATTGCTTAACCAGTGAGACATGCTTTTGGGGGTGCAAACTGTATAAAACTGTAGAAAATGTCAATTTCTGAGCATAATTGTCAGAAAGAGAAAAAAA]

[+] EMBL AA754021             [GTGGCNTTNTGNAACCCNCNNGAGATTAAAACAAGGTTGCNCTATGCATGCANAAANGTGGCATTGGATTACAGAGCANAACTTCATGAATTNAAGGAGTCATAATGGAAGACTGGAGGNATTATATGTTTATGCCACCNAGCTTAAAAAGATTTGGGGCATTGTCATGGGGGGTACCACAAAATTGCAGGTTTGATGCTACCNTGGAATTTGAGTTTCACATGCTTCTTTTCCCCCNAAATGTTGTGCGAGAAGTACAACTGGTATTCATGTCCTGATTTTTCTTTCTCCTGAATCCTGATGATGTGTCTGATAATTTGGTTTCTTATGCAGTCTTTCATTGCTTAACCAGTGAGACATGCTTTTGGGGGTGCAAACTGTATAAAACTGTAGAAAATGTCAATTTCTGAGCATAATTGTCAGAAAGAGAAAAAAA]




>consensus_4122#1
GTGGCNTTNTGNAACCCNCNNGAGATTAAAACAAGGTTGCNCTATGCATGCANAAANGTG
GCATTGGATTACAGAGCANAACTTCATGAATTNAAGGAGTCATAATGGAAGACTGGAGGN
ATTATATGTTTATGCCACCNAGCTTAAAAAGATTTGGGGCATTGTCATGGGGGGTACCAC
AAAATTGCAGGTTTGATGCTACCNTGGAATTTGAGTTTCACATGCTTCTTTTCCCCCNAA
ATGTTGTGCGAGAAGTACAACTGGTATTCATGTCCTGATTTTTCTTTCTCCTGAATCCTG
ATGATGTGTCTGATAATTTGGTTTCTTATGCAGTCTTTCATTGCTTAACCAGTGAGACAT
GCTTTTGGGGGTGCAAACTGTATAAAACTGTAGAAAATGTCAATTTCTGAGCATAATTGT
CAGAAAGAGAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4122#0      GCTGCGTTTACGGAAACCACGAGTTTACGCCTTCACCGACCGTTACGCTGCCGCTTTGCA 60
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      CTTTCCCCTCCCCGTCCCCCGCCGCGCCGCGTGTCCGCGTCGGTGTCGTGGTCATCCGCC 120
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      GCCGCCGCCGCCGCCGCTCTCGCAATGGCGAGGCCGTTGCCGAACCAGGCCGTGGCACGG 180
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      ACGTCCGCCACCTCCCTCCGTCACTTCCCTGGGCACTCGAAGCCGTCGCTGCCGCTGTCC 240
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      GCGCCGGCTCTCCGGAAAGCCGCGGCGGCGCTCCTGCTCGCGGCGGCCGTGGCGCTGCCC 300
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      TGTGCCGTGCTGTACCGCGCCGCGGTGTTGGACGCGGTCCAACCGGTGCAGGTGGGATGG 360
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      GATCGCGGGCCGTGGTGGGAGCGGGGCCAGCCGCCCCCTGCTGTTGTGGTCCCCGAGGAG 420
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      GACGGCGACGTCGATCCCGCTGCGGCCGACGATCTGGACAGTGACGACCTCAAACTTGAG 480
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      CAAGTTCTGCAGGAGGCCTCCATGGATAATAAGACCATTATATTGACAACACTGAATGCT 540
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      GCATGGGCTTCTTCAGGCTCGGTCATTGATCTTTTTATCGACAGTTTTCGCCGTGGTGTT 600
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      AGGACTAGCTCACTTTTGAGACATCTTGTGATAATAACATTTGATTGGAAGGCTTACAAA 660
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      AGGTGTATGAAGATCCACGCATACTGCTTTGCTCTTGCAACCGAGAATATGGATTTTTCT 720
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      CAAGAGAAGAGGTTTCTGACTGCTGGTTATCTGGACATGATGTGGAAAAGGCTGGATTTC 780
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      TTGCGGCTAGTTCTTGAAAAAGGTTACAGCTTCATTTTCTCGGATGCAGACATCACGTGG 840
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      TTCCGCAATCCTTTTCCTCATTTCTATCCTGATGGAGATTTTCAGATTGCATGTGATCAC 900
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      TATGTAGGCAATGCAACTGATTTGGGGAACATAGCAAACGGGGGATTTAACTATGTGAGG 960
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      TCAAACAATCAAAGTATAGAATTCTACAAGTTTTGGTATTCTTCGCGACTGAGATATCCT 1020
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      GGCTATCATGATCAGGATGTATTTAATTTTATAAAGCATGATCCTTACATTACAGATATT 1080
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      GGACTGAAAATTAAGTTCCTAAGCACTACATACTTTGGTGGCATTTGTGAACCCAGCAGA 1140
consensus_4122#1      -------------------------------------GTGGCNTTNTGNAACCCNCNNGA 23
                                                           ***** **    *****    **

consensus_4122#0      GATTTAAACAAGGTTTGCACTATGCATGCAAAC-TGTTGCATTGGATTACAGAGCAAA-C 1198
consensus_4122#1      GATTAAAACAAGGTT-GCNCTATGCATGCANAAANGTGGCATTGGATTACAGAGCANAAC 82
                      **** ********** ** *********** *   ** ****************** * *

consensus_4122#0      TTCATGATCTAA--GAGTCATAATGGAAGACTGGAGGAATTATATGTCTATGCCACCAAG 1256
consensus_4122#1      TTCATGAATTNAAGGAGTCATAATGGAAGACTGGAGGNATTATATGTTTATGCCACCNAG 142
                      *******  * *  *********************** ********* ********* **

consensus_4122#0      CTTAAAAAGATTTGGGGCATTGTCATGGGGGGTACCACAAAATTGCAGTCTTTCATTGCT 1316
consensus_4122#1      CTTAAAAAGATTTGGGGCATTGTCATGGGGGGTACCACAAAATTGCAGG--TTTGATGCT 200
                      ************************************************   **   ****

consensus_4122#0      TAACCAGTGAGACATGCTTTTGGGGGTGCAAACTGTATAAAACTGTAGAAAATGTCAATT 1376
consensus_4122#1      --ACCN-TGGAATTTGAGTTT-----CACATGCTTCTTT---TCCCCCNAAATGTTGTGC 249
                        ***  **  *  **  ***       **  **   *           ******     

consensus_4122#0      TCTGAGCATAATTGTCAGAAAGAGAAAAATACTTTGAAGGGAAAAAGGGGCTACTACATC 1436
consensus_4122#1      GAGAAGTACAACTGGT--------ATTCATGTCCTGATT-----------TTTCTTTCTC 290
                          ** * ** **          *   **    ***              * **   **

consensus_4122#0      ATCAACTTTGCCAACTTTGATGCCTTCAGTTAGGCCTGCTCATGGATTGGATCCTAATGG 1496
consensus_4122#1      CTGAATCCTGATGA---TGTGTCTGATAATTTGGTTT-CTTATGCAGTCTTTCATTGCTT 346
                       * **   **   *   **   *    * ** **  * ** *** * *   ** *     

consensus_4122#0      ATTTAATGGATTGGATTTCAGTGTGGGTTGGCTTTGGATGGGTTGAAATGGATTGATGCA 1556
consensus_4122#1      AACCAGTGAGACATGCTTT--TGGGGGTGCAAACTGTATAAAACTGTAGAAAATGT--CA 402
                      *   * **        **   ** ****      ** **        *   * **   **

consensus_4122#0      GCTAATGGGCTGGGGTGGGTTGGATGGAGATGTAAAACGGTTTGGATTGGATTGGTTTTG 1616
consensus_4122#1      ATTTCTGAGCATAATTG--TCAGAAAGAGAAAAAAA------------------------ 436
                        *  ** **     **  *  **  ****   ***                        

consensus_4122#0      GTTAGGAAAGTTTGGGTAGAAAGTGGATTCAGCCCATGGGCTTCCACTGGATTGTCCCCA 1676
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      AATCACATTCGTCTTCCTATGACATTGACAGCCACGGCACCACCACCACTTCGCTTGACG 1736
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      CCGCCGGTGGCTTGCCACCTTCCTCTCTGCCTCCCACACCCTTCTGTGTCACTACTCGTT 1796
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      GCAACCGCTGGCAGGAGCATGGCGGCGAGATCACCACCGGCTCATCATCATCATCCTGCC 1856
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      GCCGCCGCCGGCGACCTCTGCCCAGCATGTGGGCCAGCTGCTCTGACTCGCTGTTCGTGC 1916
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      TCGGTGCGGCACCGCTGCTGGAGGGGTGCGTTGGCATGGGTTTCAACCTCAACCTTGGCC 1976
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      TGCCTGGTCTGGGCCACCATGTCACCAGCGGCGCTGCAGACGAGGTGGCTGGTAGCTGTC 2036
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      GGCCTCCATGGCCTTAGCCCCAGATGGGGCAGCGGATCATTGGCACTAACGATGACGACG 2096
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      TCGTCACCTCTGCTCTGTGGAGACAGCAGCAAAAATGTGGAGACATGGAAGCTGGCGGCC 2156
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      GGAGGTAGGGGCGGAGGCAGGCCTAGGGCGGCCTGCCTCCAAAAACTTGCTTAAATTTTG 2216
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      TTGATTCACCATGTAATTTTTTCATAAAACTAATACTCCATTAGTCGAGCCCTACCTTAG 2276
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      GCCTAGTCTTGTATAATTTCTGGCTCCGCCACTGGCCGGAGGAGGTGCTCCCATGTGGCC 2336
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      GGAGTTCTCTGTGGCGGCGCCGGTGGTCGGCTGGGCGCTGCAACCACAGCTTCTGTGATA 2396
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      CTAAAGTTTCTGTGATACTAAAGTGGATATATGCATCCATGCATGGAACATGTGTATATT 2456
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      GGTAGTATACACGCATGTATATGCGCATGCATGTATATGTGTGTACGTGCGTGAAGAGAG 2516
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      TTGAACCAAGGATTGGACACTGCGGTTTCAGTCCATGGATTTAGAATTGGTTGAACCCAC 2576
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      TTAACTAGAATGGGTTGGACTCGTTTGGTTCAAAACTTTTTATGGGTTGGATTGGTTTGG 2636
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      GGCTTGAAGAAGGAGAAGTGGTCTGGGTTGAATTGGAAGGATGCTTGTTACAGAAGTGGG 2696
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      TTGGGGCAGTAATGGATTGGATTTCCACCCATTAGCACCCCTACCTTCAGTAATATTGTG 2756
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      TATCTTTCGGAACATAACATTGGGAAAGGTGCAGGCTGCTTTCTGGTATCCCTTTGATTA 2816
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      TTCATAGTTCTTATCTCCTTTTTGTTTTAGTTCTAACATGTTTGTTGATCTGGAACTGCA 2876
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      GCCATGCAAATATGCGATTTTAAATTGCATAAACTGGTAGAAGTTTCATCTGCGCGAAAA 2936
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      GCACTGCAAGAAACACAGCTGCATGACCATGGCAAGAATACTTGGCATCTGAACATTGGT 2996
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      ACGTATCCCAGCTGTTGCAAGTTTGCAAAAACACAGTACAGCATAATGTTTAGGTGCCCG 3056
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      TTTTTCTCTCATTTTAGCAGACTGAAATTATTTGTTAATAGATACGGGGGGATTCCCCCA 3116
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      ATGCTCTAATGCTTGGTTGCCTGAACCTGTCCATCTATAGGGCCAGTCTCCTTCTCCTCG 3176
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      TCTCTCTTATCTACCTTTCTTCTCTCATTCTGTCATTCACATTACTAAAAGGTGCGATGA 3236
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      GCCGTCTTATTTGTTGGTTGGCGTTGTACACTTGTGCATGCCTTTGTCTAAAGTCTCTCC 3296
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      CTGTCCTTTTGGAACGGTTTCGCTAAAAAAACTTCCAACAGTTTTATTTTGGGGCAACTT 3356
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      CTGATTTCCTGGCCATCTGATGTGCACGGAGATTCGTGAAGGCGCGCTGTGGGTCCGGTG 3416
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      GATCGAACTCAGGGTCCCTGCTTCGCACCAAGCACTCCTTAACAGCTGAGATATGCATGC 3476
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      TTTTCATTAGTTACATGTATTACACTGTAACTTTAGTATAGTTGCAATGTAATTACACTA 3536
consensus_4122#1      ------------------------------------------------------------
                                                                                  

consensus_4122#0      AAATTGTACTATACTTACATTTGAAAAATTTTACGCAATAAACTTGCGAC 3586
consensus_4122#1      --------------------------------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)