cluster # 4157

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Oryza sativa
cluster # 4157 cluster # 4157 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4157#0 length = 729 sequences # 2

consensus_4157#1 length = 606 sequences # 1

consensusID : consensus_4157#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 729
fasta sequence

                              [TTTTTTTTTGCATGTAAAGATTTTTATTATACATAATTAAGTCATTAATGACTTAGCTTAGTTGACACTCTGCAGGTAGAGCCACTAGGCAATA-GGAAGACAAATTCAGAAGACAAGAGCCCCAAACTGAACAAAAAGGCAAAGCTACAGGACACTTGAAACGAAAGGGGAAAAAATCAAGCAGAAATATATATTAAGCCTGCCTGAAAAAAGATTAAAAAAAGAAGAAAAAAAACTGGAAACCTATGTACAGATTTAGGAAGCTGGAAAAANNWGMAGAGATTAAAATTAAAGAAGCTAGAGCTGTTAYMMAC-TGGTAATTAATCTCGAGATTAATTATTATTATGATCGAATCACAGGTTCCATAAGAGGGCACCAACCGACTGGGCCCATCCATGGTGGTCGGCGTCGAGGCCGAACAGGTCGTCGTGCGCCGCGGCCGCCGCCGCCGCCGCGGCGGCCGCCGCGTAGCCGCCGTCGATCCAGACGGGGTCGCACCACGGGTGTTCCGCCGCCGTGTCCTGGAACGCGGCGCCGAACACGAGCTCGGCGGCGTCCAGCTCGTCGAGCCGCGGCAGCTCGACGATCGCCTCGAGCTCGTCGTCCGCCGCGCCGGCGCCGCTGACACCGCCGTTCTTGGGCGTCAGGAATGCGGCGGCGGCGGAGTCGGCCTGCACGGTGAGCGACGACGGCGGCGGCTGGGGGGGCTCCATGGCGGCGGCGCGGGCG]

[-] EMBL AA754313             [TTTTTTTTTGCATGTAAAGATTTTTATTATACATAATTAAGTCATTAATGACTTAGCTTAGTTGACACTCTGCAGGTAGAGCCACTAGGCAATA GGAAGACAAATTCAGAAGACAAGAGCCCCAAACTGAACAAAAAGGCAAAGCTACAGGACACTTGAAACGAAAGGGGAAAAAATCAAGCAGAAATATATATTAAGCCTGCCTGAAAAAAGATTAAAAAAAGAAGAAAAAAAACTGGAAACCTATGTACAGATTTAGGAAGCTGGAAAAANNWGMAGAGATTAAAATTAAAGAAGCTAGAGCTGTTAYMMAC TGGTAATTAATCTCG                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB670803             [         GCATGTAAAGATTTTTATTATACATAATTAACCCATTAATGACTTAGCTTAGTTGACACTCTGCAGGTAGAGCCACTAGGCAAGAGGGAAGACAAATTCAGAAGACAAGAGCCCCAAACTGAACAAAAAGGCAAAGCTACAGGACACTTGAAACGAAAGGGGAAAAAATCAAGCAGAAATATATATTAAGCCTGCCTGAAAAAAGATTAAAAAAAGAAGAAAAAAAACTGGAAACCTATGTACAGATTTAGGAAGCTGGAAAAAAAAGGAGAGATTAAAATTAAAGAAGCTAGAGCTGTTAATTACTTGGTAATTAAT TAGAGATTAATTATTATTATGATCGAATCACAGGTTCCATAAGAGGGCACCAACCGACTGGGCCCATCCATGGTGGTCGGCGTCGAGGCCGAACAGGTCGTCGTGCGCCGCGGCCGCCGCCGCCGCCGCGGCGGCCGCCGCGTAGCCGCCGTCGATCCAGACGGGGTCGCACCACGGGTGTTCCGCCGCCGTGTCCTGGAACGCGGCGCCGAACACGAGCTCGGCGGCGTCCAGCTCGTCGAGCCGCGGCAGCTCGACGATCGCCTCGAGCTCGTCGTCCGCCGCGCCGGCGCCGCTGACACCGCCGTTCTTGGGCGTCAGGAATGCGGCGGCGGCGGAGTCGGCCTGCACGGTGAGCGACGACGGCGGCGGCTGGGGGGGCTCCATGGCGGCGGCGCGGGCG]




>consensus_4157#0
TTTTTTTTTGCATGTAAAGATTTTTATTATACATAATTAAGTCATTAATGACTTAGCTTA
GTTGACACTCTGCAGGTAGAGCCACTAGGCAATAGGAAGACAAATTCAGAAGACAAGAGC
CCCAAACTGAACAAAAAGGCAAAGCTACAGGACACTTGAAACGAAAGGGGAAAAAATCAA
GCAGAAATATATATTAAGCCTGCCTGAAAAAAGATTAAAAAAAGAAGAAAAAAAACTGGA
AACCTATGTACAGATTTAGGAAGCTGGAAAAANNWGMAGAGATTAAAATTAAAGAAGCTA
GAGCTGTTAYMMACTGGTAATTAATCTCGAGATTAATTATTATTATGATCGAATCACAGG
TTCCATAAGAGGGCACCAACCGACTGGGCCCATCCATGGTGGTCGGCGTCGAGGCCGAAC
AGGTCGTCGTGCGCCGCGGCCGCCGCCGCCGCCGCGGCGGCCGCCGCGTAGCCGCCGTCG
ATCCAGACGGGGTCGCACCACGGGTGTTCCGCCGCCGTGTCCTGGAACGCGGCGCCGAAC
ACGAGCTCGGCGGCGTCCAGCTCGTCGAGCCGCGGCAGCTCGACGATCGCCTCGAGCTCG
TCGTCCGCCGCGCCGGCGCCGCTGACACCGCCGTTCTTGGGCGTCAGGAATGCGGCGGCG
GCGGAGTCGGCCTGCACGGTGAGCGACGACGGCGGCGGCTGGGGGGGCTCCATGGCGGCG
GCGCGGGCG

consensusID : consensus_4157#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 606
fasta sequence

                              [TCTCCTCTCTCCTCTTCACCCGCTGCCGCCCACTACTACTAAAACGGGCAACTCATCCACCTCCTCGACGCAGCCTCACTCCTCCTCCATTGCTACCTCAAGCTCCAGCTCGAGCTCGAGGCTTTGCTTTGGCCGCAATGCCGGAGCTGGAGGTGTGTAGCCCTGCGTCGTCGGGTGGGGCGTCGCCGCCGGAGTCGCCGGTGGAGGGGAGGAGGGGAGGAGGAGGAGGGGAAAAAAAAGGAGAGATTAAAATTAAAGAAGCTAGAGCTGTTAATTACTTGGTAATTAATTAGAGATTAATTATTATTATGATCGAATCACAGGTTCCATAAGAGGGCACCAACCGACTGGGCCCATCCATGGTGGTCGGCGTCGAGGCCGAACAGGTCGTCGTGCGCCGCGGCCGCCGCCGCCGCCGCGGCGGCCGCCGCGTAGCCGCCGTCGATCCAGACGGGGTCGCACCACGGGTGTTCCGCCGCCGTGTCCTGGAACGCGGCGCCGAACACGAGCTCGGCGGCGTCCAGCTCGTCGAGCCGCGGCAGCTCGACGATCGCCTCGAGCTCGTCGTCCGCCGCGCCGGCGCCGCTGACACCGCCGTTCTTGGGC]

[+] EMBL CB670802             [TCTCCTCTCTCCTCTTCACCCGCTGCCGCCCACTACTACTAAAACGGGCAACTCATCCACCTCCTCGACGCAGCCTCACTCCTCCTCCATTGCTACCTCAAGCTCCAGCTCGAGCTCGAGGCTTTGCTTTGGCCGCAATGCCGGAGCTGGAGGTGTGTAGCCCTGCGTCGTCGGGTGGGGCGTCGCCGCCGGAGTCGCCGGTGGAGGGGAGGAGGGGAGGAGGAGGAGGGGAAAAAAAAGGAGAGATTAAAATTAAAGAAGCTAGAGCTGTTAATTACTTGGTAATTAATTAGAGATTAATTATTATTATGATCGAATCACAGGTTCCATAAGAGGGCACCAACCGACTGGGCCCATCCATGGTGGTCGGCGTCGAGGCCGAACAGGTCGTCGTGCGCCGCGGCCGCCGCCGCCGCCGCGGCGGCCGCCGCGTAGCCGCCGTCGATCCAGACGGGGTCGCACCACGGGTGTTCCGCCGCCGTGTCCTGGAACGCGGCGCCGAACACGAGCTCGGCGGCGTCCAGCTCGTCGAGCCGCGGCAGCTCGACGATCGCCTCGAGCTCGTCGTCCGCCGCGCCGGCGCCGCTGACACCGCCGTTCTTGGGC]




>consensus_4157#1
TCTCCTCTCTCCTCTTCACCCGCTGCCGCCCACTACTACTAAAACGGGCAACTCATCCAC
CTCCTCGACGCAGCCTCACTCCTCCTCCATTGCTACCTCAAGCTCCAGCTCGAGCTCGAG
GCTTTGCTTTGGCCGCAATGCCGGAGCTGGAGGTGTGTAGCCCTGCGTCGTCGGGTGGGG
CGTCGCCGCCGGAGTCGCCGGTGGAGGGGAGGAGGGGAGGAGGAGGAGGGGAAAAAAAAG
GAGAGATTAAAATTAAAGAAGCTAGAGCTGTTAATTACTTGGTAATTAATTAGAGATTAA
TTATTATTATGATCGAATCACAGGTTCCATAAGAGGGCACCAACCGACTGGGCCCATCCA
TGGTGGTCGGCGTCGAGGCCGAACAGGTCGTCGTGCGCCGCGGCCGCCGCCGCCGCCGCG
GCGGCCGCCGCGTAGCCGCCGTCGATCCAGACGGGGTCGCACCACGGGTGTTCCGCCGCC
GTGTCCTGGAACGCGGCGCCGAACACGAGCTCGGCGGCGTCCAGCTCGTCGAGCCGCGGC
AGCTCGACGATCGCCTCGAGCTCGTCGTCCGCCGCGCCGGCGCCGCTGACACCGCCGTTC
TTGGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4157#0      TTTTTTTTTGCATGTAAAGATTTTTATTATACATAATTAAGTCATTAATGACTTAGCTTA 60
consensus_4157#1      TCTCCTCTCTCCTCTTCAC-CCGCTGCCGCCCACTACTAC----TAAAACGGGCAACTCA 55
                      * *  * *  * * *  *      *      **  * **     * **      * ** *

consensus_4157#0      GTTGACACTCTGCAGGTAGAGCCACTAGGCAATAGGAAGACAAATTCAGAAGACAAGAGC 120
consensus_4157#1      -TCCACCTCCTCGACGCAGCCTCACT--CCTCCTCCATTGCTACCTCAAGCTCCAG---- 108
                       *  **   **  * * **   ****   *      *   * *  ***     **     

consensus_4157#0      CCCAAACTGAACAAAAAGGCAAAGCTACAGGACACTTGAAACGAAAGGGGAAAAAATCAA 180
consensus_4157#1      CTCGAGCTCGAGGCTTTGCTTTGGCCGCA--ATGCCGGAGCTGGAGGTGTGTAGCCCTGC 166
                      * * * **  *      *     **  **  *  *  **   * * * *   *       

consensus_4157#0      GCAGAAATATATATTAAGCCTGCCTGAAAAAAGATTAAAAAAAGAAGAAAAAAAACTGGA 240
consensus_4157#1      GTCGTCGGGTGGGGCGTCGCCGCCGGAG------TCGCCGGTGGAGGGGAGGAGGGGAGG 220
                      *  *     *         * *** **       *        ** *  *  *     * 

consensus_4157#0      AACCTATGTACAGATTTAGGAAGCTGGAAAAANNWGMAGAGATTAAAATTAAAGAAGCTA 300
consensus_4157#1      AGG--------------AGGAGG--GGAAAAAAAAGGAGAGATTAAAATTAAAGAAGCTA 264
                      *                **** *  *******   * ***********************

consensus_4157#0      GAGCTGTTA-YMMACTGGTAATTAATCTCGAGATTAATTATTATTATGATCGAATCACAG 359
consensus_4157#1      GAGCTGTTAATTACTTGGTAATTAAT-TAGAGATTAATTATTATTATGATCGAATCACAG 323
                      *********      *********** * *******************************

consensus_4157#0      GTTCCATAAGAGGGCACCAACCGACTGGGCCCATCCATGGTGGTCGGCGTCGAGGCCGAA 419
consensus_4157#1      GTTCCATAAGAGGGCACCAACCGACTGGGCCCATCCATGGTGGTCGGCGTCGAGGCCGAA 383
                      ************************************************************

consensus_4157#0      CAGGTCGTCGTGCGCCGCGGCCGCCGCCGCCGCCGCGGCGGCCGCCGCGTAGCCGCCGTC 479
consensus_4157#1      CAGGTCGTCGTGCGCCGCGGCCGCCGCCGCCGCCGCGGCGGCCGCCGCGTAGCCGCCGTC 443
                      ************************************************************

consensus_4157#0      GATCCAGACGGGGTCGCACCACGGGTGTTCCGCCGCCGTGTCCTGGAACGCGGCGCCGAA 539
consensus_4157#1      GATCCAGACGGGGTCGCACCACGGGTGTTCCGCCGCCGTGTCCTGGAACGCGGCGCCGAA 503
                      ************************************************************

consensus_4157#0      CACGAGCTCGGCGGCGTCCAGCTCGTCGAGCCGCGGCAGCTCGACGATCGCCTCGAGCTC 599
consensus_4157#1      CACGAGCTCGGCGGCGTCCAGCTCGTCGAGCCGCGGCAGCTCGACGATCGCCTCGAGCTC 563
                      ************************************************************

consensus_4157#0      GTCGTCCGCCGCGCCGGCGCCGCTGACACCGCCGTTCTTGGGCGTCAGGAATGCGGCGGC 659
consensus_4157#1      GTCGTCCGCCGCGCCGGCGCCGCTGACACCGCCGTTCTTGGGC----------------- 606
                      *******************************************                 

consensus_4157#0      GGCGGAGTCGGCCTGCACGGTGAGCGACGACGGCGGCGGCTGGGGGGGCTCCATGGCGGC 719
consensus_4157#1      ------------------------------------------------------------
                                                                                  

consensus_4157#0      GGCGCGGGCG 729
consensus_4157#1      ----------