cluster # 4191

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Oryza sativa
cluster # 4191 cluster # 4191 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4191#0 length = 772 sequences # 2

consensus_4191#1 length = 386 sequences # 1

consensusID : consensus_4191#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 772
fasta sequence

                              [GCGTTGCCCTTGCTGCGGGTGCAGAACTCCATCTGCTCCGGCGGCGGCGGCGGCGGCGGCGGCGAGGCGAGGAGAGAGAGGATGGGGCGGCGGATCCTGAACGACGCGCTGCGGACGATGGTGAACGCGGAGCGGAGGGGGAAGGCGACGGCGCTGCTGCAGCCCATCTCCGGCGTCATGGTCTCCTTCCTCAACATCATGAAGCACCGAGGGTACATTAAAAAGTTTGAGGTCATCGATCCCCATAGAGTTGGAAAAATCAATGTAGAGCTTCATGGAAGGATTAAAGATTGTAAGGCTCTTACTTATAGGCAGGATATTAGAGCCAAGGAAATAGAACAATACAGAGTTCGGATGCTTCCAACACGGCAGTGGGGCTATGTCGTGATCACAACTCCAAATGGTGTACTGGATCATGAGGAAGCAATTAAGCAGAATGTGGGCGGGCAAGTGCTTGGTTATTTTCATTGAGAAGTAACATTGTTTTCCTGTCTTGTTATGTCTGGCCTTGTTCTCCTGTGTGTTATCACTGAACTCTTTTTTTTTTTTTTTGTACTTTTGAGTGTTGTTGCTTTTGTTCATGGCCAACAGGAAATGCAATAACGCATAAAAGATACAGCTCAGAGCACTAGAAAATGCCAATTGTTAAAGAAAAAGATTGTAATCCTTCGTTGGACTGTTCTTTCTGTAGACTATTGCATCTTGATTTTGGAGTTACTCCTACATAGCTATCCTCTCGACCGGAGAAGATATGGTCCAGAGTATGACAGTT]

[+] EMBL AK121591             [GCGTTGCCCTTGCTGCGGGTGCAGAACTCCATCTGCTCCGGCGGCGGCGGCGGCGGCGGCGGCGAGGCGAGGAGAGAGAGGATGGGGCGGCGGATCCTGAACGACGCGCTGCGGACGATGGTGAACGCGGAGCGGAGGGGGAAGGCGACGGCGCTGCTGCAGCCCATCTCCGGCGTCATGGTCTCCTTCCTCAACATCATGAAGCACCGAGGGTACATTAAAAAGTTTGAGGTCATCGATCCCCATAGAGTTGGAAAAATCAATGTAGAGCTTCATGGAAGGATTAAAGATTGTAAGGCTCTTACTTATAGGCAGGATATTAGAGCCAAGGAAATAGAACAATACAGAGTTCGGATGCTTCCAACACGGCAGTGGGGCTATGTCGTGATCACAACTCCAAATGGTGTACTGGATCATGAGGAAGCAATTAAGCAGAATGTGGGCGGGCAAGTGCTTGGTTATTTTCATTGAGAAGTAACATTGTTTTCCTGTCTTGTTATGTCTGGCCTTGTTCTCCTGTGTGTTATCACTGAACTCTTTTTTTTTTTTTTTGTACTTTTGAGTGTTGTTGCTTTTGTTCATGGCCAACAGGAAATGCAATAACGCATAAAAGATACAGCTCAGAGCACTAGAAAATGCCAATTGTTAAAGAAAAAG                                                                                                                   ]
[+] EMBL AK063840             [                                                                                                                                                                                                                                                                                                                                                                        CCAACACGGCAGTGGGGCTATGTCGTGATCACAACTCCAAATGGTGTACTGGATCATGAGGAAGCAATTAAGCAGAATGTGGGCGGGCAAGTGCTTGGTTATTTTCATTGAGAAGTAACATTGTTTTCCTGTCTTGTTATGTCTGGCCTTGTTCTCCTGTGTGTTATCACTGAACTC  TTTTTTTTTTTTTGTACTTTTGAGTGTTGTTGCTTTTGTTCATGGCCAACAGGAAATGCAATAACGCATAAAAGATACAGCTCAGAGCACTAGAAAATGCCAATTGTTAAAGAAAAAGATTGTAATCCTTCGTTGGACTGTTCTTTCTGTAGACTATTGCATCTTGATTTTGGAGTTACTCCTACATAGCTATCCTCTCGACCGGAGAAGATATGGTCCAGAGTATGACAGTT]




>consensus_4191#0
GCGTTGCCCTTGCTGCGGGTGCAGAACTCCATCTGCTCCGGCGGCGGCGGCGGCGGCGGC
GGCGAGGCGAGGAGAGAGAGGATGGGGCGGCGGATCCTGAACGACGCGCTGCGGACGATG
GTGAACGCGGAGCGGAGGGGGAAGGCGACGGCGCTGCTGCAGCCCATCTCCGGCGTCATG
GTCTCCTTCCTCAACATCATGAAGCACCGAGGGTACATTAAAAAGTTTGAGGTCATCGAT
CCCCATAGAGTTGGAAAAATCAATGTAGAGCTTCATGGAAGGATTAAAGATTGTAAGGCT
CTTACTTATAGGCAGGATATTAGAGCCAAGGAAATAGAACAATACAGAGTTCGGATGCTT
CCAACACGGCAGTGGGGCTATGTCGTGATCACAACTCCAAATGGTGTACTGGATCATGAG
GAAGCAATTAAGCAGAATGTGGGCGGGCAAGTGCTTGGTTATTTTCATTGAGAAGTAACA
TTGTTTTCCTGTCTTGTTATGTCTGGCCTTGTTCTCCTGTGTGTTATCACTGAACTCTTT
TTTTTTTTTTTTGTACTTTTGAGTGTTGTTGCTTTTGTTCATGGCCAACAGGAAATGCAA
TAACGCATAAAAGATACAGCTCAGAGCACTAGAAAATGCCAATTGTTAAAGAAAAAGATT
GTAATCCTTCGTTGGACTGTTCTTTCTGTAGACTATTGCATCTTGATTTTGGAGTTACTC
CTACATAGCTATCCTCTCGACCGGAGAAGATATGGTCCAGAGTATGACAGTT

consensusID : consensus_4191#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 386
fasta sequence

                              [CAGCGTCCGCCTGGATCATGAGGAAGCCATTAACAGAATGTGGGCGGCACAGTGCTTGGTTATTTTCATTGAGAAGTAACACTTGTTTTCACTGTCTTGTTAATGTCTGGCCTTGTTGCTCCTGTGGTGGTTATGCAACTGGAACTGCTTTGTTTTGTTTGTACTTTTGAGTGTTGTTGCTTTTGTTCATGGGCCAAACAAGGAAATGCAATAACGCATAATAAAGATACAGCTCAGAGCAACTGAGAAAATGCCAAATTGTTAAAGAAAAAGATGTGGTAATGCCTTCCGTTGGGACTGGTGTGCTTTGCTGTGAGACTGATGTGCATCTTGATTTTGGAGTTACTCCTACATAGCTATCCTCTCGACCGGAGAAGATATGGTCC]

[+] EMBL BI810706             [CAGCGTCCGCCTGGATCATGAGGAAGCCATTAACAGAATGTGGGCGGCACAGTGCTTGGTTATTTTCATTGAGAAGTAACACTTGTTTTCACTGTCTTGTTAATGTCTGGCCTTGTTGCTCCTGTGGTGGTTATGCAACTGGAACTGCTTTGTTTTGTTTGTACTTTTGAGTGTTGTTGCTTTTGTTCATGGGCCAAACAAGGAAATGCAATAACGCATAATAAAGATACAGCTCAGAGCAACTGAGAAAATGCCAAATTGTTAAAGAAAAAGATGTGGTAATGCCTTCCGTTGGGACTGGTGTGCTTTGCTGTGAGACTGATGTGCATCTTGATTTTGGAGTTACTCCTACATAGCTATCCTCTCGACCGGAGAAGATATGGTCC]




>consensus_4191#1
CAGCGTCCGCCTGGATCATGAGGAAGCCATTAACAGAATGTGGGCGGCACAGTGCTTGGT
TATTTTCATTGAGAAGTAACACTTGTTTTCACTGTCTTGTTAATGTCTGGCCTTGTTGCT
CCTGTGGTGGTTATGCAACTGGAACTGCTTTGTTTTGTTTGTACTTTTGAGTGTTGTTGC
TTTTGTTCATGGGCCAAACAAGGAAATGCAATAACGCATAATAAAGATACAGCTCAGAGC
AACTGAGAAAATGCCAAATTGTTAAAGAAAAAGATGTGGTAATGCCTTCCGTTGGGACTG
GTGTGCTTTGCTGTGAGACTGATGTGCATCTTGATTTTGGAGTTACTCCTACATAGCTAT
CCTCTCGACCGGAGAAGATATGGTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4191#0      GCGTTGCCCTTGCTGCGGGTGCAGAACTCCATCTGCTCCGGCGGCGGCGGCGGCGGCGGC 60
consensus_4191#1      ------------------------------------------------------------
                                                                                  

consensus_4191#0      GGCGAGGCGAGGAGAGAGAGGATGGGGCGGCGGATCCTGAACGACGCGCTGCGGACGATG 120
consensus_4191#1      ------------------------------------------------------------
                                                                                  

consensus_4191#0      GTGAACGCGGAGCGGAGGGGGAAGGCGACGGCGCTGCTGCAGCCCATCTCCGGCGTCATG 180
consensus_4191#1      ------------------------------------------------------------
                                                                                  

consensus_4191#0      GTCTCCTTCCTCAACATCATGAAGCACCGAGGGTACATTAAAAAGTTTGAGGTCATCGAT 240
consensus_4191#1      ------------------------------------------------------------
                                                                                  

consensus_4191#0      CCCCATAGAGTTGGAAAAATCAATGTAGAGCTTCATGGAAGGATTAAAGATTGTAAGGCT 300
consensus_4191#1      ------------------------------------------------------------
                                                                                  

consensus_4191#0      CTTACTTATAGGCAGGATATTAGAGCCAAGGAAATAGAACAATACAGAGTTCGGATGCTT 360
consensus_4191#1      ------------------------------------------------------------
                                                                                  

consensus_4191#0      CCAACACGGCAGTGGGGCTATGTCGTGATCACAACTCCAAATGGTGTACTGGATCATGAG 420
consensus_4191#1      --------------------------------------CAGCGTCCGCCTGGATCATGAG 22
                                                             *  *     ************

consensus_4191#0      GAAGCAATTAAGCAGAATGTGGGCGGGCAAGTGCTTGGTTATTTTCATTGAGAAGTAACA 480
consensus_4191#1      GAAGCCATTAA-CAGAATGTGGGCGGCACAGTGCTTGGTTATTTTCATTGAGAAGTAACA 81
                      ***** ***** **************   *******************************

consensus_4191#0      -TTGTTTTC-CTGTCTTGTTA-TGTCTGGCCTTGTT-CTCCTGTGTGTTATCACTGAACT 536
consensus_4191#1      CTTGTTTTCACTGTCTTGTTAATGTCTGGCCTTGTTGCTCCTGTG-GTGGTTATGCAACT 140
                       ******** *********** ************** ******** **  * *   ****

consensus_4191#0      ----CTTTTTTTTTTTTTTTGTACTTTTGAGTGTTGTTGCTTTTGTTCATGGCC--AACA 590
consensus_4191#1      GGAACTGCTTTGTTTTGTTTGTACTTTTGAGTGTTGTTGCTTTTGTTCATGGGCCAAACA 200
                          **  *** **** *********************************** *  ****

consensus_4191#0      -GGAAATGCAATAACGCATAA--AAGATACAGCTCAGAGCACT--AGAAAATGCCAA-TT 644
consensus_4191#1      AGGAAATGCAATAACGCATAATAAAGATACAGCTCAGAGCAACTGAGAAAATGCCAAATT 260
                       ********************  ******************    ************ **

consensus_4191#0      GTTAAAGAAAAAGATT--GTAAT--CCTTCGTTGG-ACTGTT----CTTTCTGT-AGACT 694
consensus_4191#1      GTTAAAGAAAAAGATGTGGTAATGCCTTCCGTTGGGACTGGTGTGCTTTGCTGTGAGACT 320
                      ***************   *****  * * ****** **** *     ** **** *****

consensus_4191#0      ATTG--CATCTTGATTTTGGAGTTACTCCTACATAGCTATCCTCTCGACCGGAGAAGATA 752
consensus_4191#1      GATGTGCATCTTGATTTTGGAGTTACTCCTACATAGCTATCCTCTCGACCGGAGAAGATA 380
                        **  ******************************************************

consensus_4191#0      TGGTCCAGAGTATGACAGTT 772
consensus_4191#1      TGGTCC-------------- 386
                      ******