Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4271 cluster # 4271       Sequences # 3       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4271#0 length = 1161 sequences # 3  
consensusID : consensus_4271#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1161
fasta sequence 
                              [TCCGGTCAAGGAGGAGGAGGGGGTGGCGCGCGTGGTGGTGGTGGTGGCGCCGCCGCCGCCCGTCGATCCCGGCGAGGAGGAGGCGGGCAAGAGGGCGGCGAAGAGGGCGAGGAGGTGCCTGAACTGCGACGCGGTGGAGACGCCACAGTGGAGGTCGGGCCCGATGGGGAGGAGCACGCTCTGCAACGCCTGCGGCGTCCGCCTCAGGGCGGTCGGCTCGCTGCCTGAACACCGCGCGCCGGCGGCGAGGACGACGACGGCCGCCCCCGCGTCGCCGCCCGATAGCCCGATCTGGACGCCCGGCCACAAGCCGCCCTCGTCGTCGCCCGACATCTACCTCGTCAGGAGGACACCGAAGCTGCCGGTGACGCGGCCTCCCCGTACCAAGCAAGCTCCGCCCACAGCGCCCGCGCCCGCGCCTCCGCCGCCGCCGCCGCAGCCGGCGTCGCCGAAGACGAAGACGAAGGCGAAGGCGAAGAAGCCGAAGAGGAAGAGAAGCTGCGTGCACTGCGGCTCGACGGAGACGCCGCAGTGGCGGGAGGGGCCGACGGGGCGCGGCACGCTGTGCAACGCGTGCGGCGTGCGGTACAGGCAAGGGAGGCTGCTGCCGG-AGTACCGCCCCAAGGGGAGCCCCACCTTCTCGCCGTCCGTGCACGCCGCCAACCACCGCCAGGTGCT-CGAGCTCCGCCGCCAGCAGCGGCAGAGCACCAACCCCTCCACTCCACCGCCGCCGCCGGTGTCCGCCGCCGAGCCAATCCCCGACGAGCAAAAAGAAGAGGTGGTAAGCGTGCCAGTCGCCGCCGCCGCGCCCGCCACCGACGGCGGCGCGGCGAGCTCGCTGGACGCGCTGCTGC-TCGACGGGCCGTCGGCGCCGCTCATCGTGGACGGCGACGATTTC-TTGGTTAGTTAGGTAGCCAG-AAAAAAAAAAGAGGAATAATTTCAGCTGAGAATGAGATGAGGAATACCAATTTTTCGTTTGATTTTTCAGGAAAAACAGTTTTACCACCTGACATTGTGAATACTCGTCGATCCTGGGGAAAATCTTTGCGTGAAATTTAGCTAGTTTTGCTGCCCAGATGAACTAGTTCTGGTGCTTGGTAGCTGATGAAGTTGAAACCGGTTTTAATGGATCAAGGGGGATGGATGTTCAATGCCAAAAAA]

[+] EMBL AK068306             [TCCGGTCAAGGAGGAGGAGGGGGTGGCGCGCGTGGTGGTGGTGGTGGCGCCGCCGCCGCCCGTCGATCCCGGCGAGGAGGAGGCGGGCAAGAGGGCGGCGAAGAGGGCGAGGAGGTGCCTGAACTGCGACGCGGTGGAGACGCCACAGTGGAGGTCGGGCCCGATGGGGAGGAGCACGCTCTGCAACGCCTGCGGCGTCCGCCTCAGGGCGGTCGGCTCGCTGCCTGAACACCGCGCGCCGGCGGCGAGGACGACGACGGCCGCCCCCGCGTCGCCGCCCGATAGCCCGATCTGGACGCCCGGCCACAAGCCGCCCTCGTCGTCGCCCGACATCTACCTCGTCAGGAGGACACCGAAGCTGCCGGTGACGCGGCCTCCCCGTACCAAGCAAGCTCCGCCCACAGCGCCCGCGCCCGCGCCTCCGCCGCCGCCGCCGCAGCCGGCGTCGCCGAAGACGAAGACGAAGGCGAAGGCGAAGAAGCCGAAGAGGAAGAGAAGCTGCGTGCACTGCGGCTCGACGGAGACGCCGCAGTGGCGGGAGGGGCCGACGGGGCGCGGCACGCTGTGCAACGCGTGCGGCGTGCGGTACAGGCAAGGGAGGCTGCTGCCGG AGTACCGCCCCAAGGGGAGCCCCACCTTCTCGCCGTCCGTGCACGCCGCCAACCACCGCCAGGTGCT CGAGCTCCGCCGCCAGCAGCGGCAGAGCACCAACCCCTCCACTCCACCGCCGCCGCCGGTGTCCGCCGCCGAGCCAATCCCCGACGAGCAAAAAGAAGAGGTGGTAAGCGTGCCAGTCGCCGCCGCCGCGCCCGCCACCGACGGCGGCGCGGCGAGCTCGCTGGACGCGCTGCTGC TCGACGGGCCGTCGGCGCCGCTCATCGTGGACGGCGACGATTTC TTGGTTAGTTAGGTAGCCAGAAAAAAAAAAAGAGGAATAATTTCAGCTGAGAATGAGATGAGGAATACCAATTTTTCGTTTGATTTTTCAGGAAAAACAGTTTTACCACCTGACATTGTGAATACTCGTCGATCCTGGGGAAAATCTTTGCGTGAAATTTAGCTAGTTTTGCTGCCCAGATGAACTAGTTCTGGTGCTTGGTAGCTGATGAAGTTGAAACCGGTTTTAATGGATCAAGGGGGATGGAT                ]
[+] EMBL OSC4141              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GTGCGGTACAGGCAAGGGAGGCTGCTGCCGN AGTACCGCCCCAAGGGGAGCCCCACCTTCTCGCCGTCCGTGCACGCCGCCAACCACCGCCAGGNCNTNCGAGCTCCGNCGCCAGCAGCGGCAGAGCACCAACCCCTCCACTCCACCGCCGCCGCCGGTGTCCGCCGCCGAGCCAATCCCCGACGAGCAAAAAGAAGAGGTGGTAAGCGTGCCAGTCGCCGTAGTCGCGCCCGCCACCGACGGCGGCGCGGCGAGCTCGCTGGACGCGCTGCTGCTTCGACGGGCCGTCGGCGCCGCTCATCGTGGACGGCGACGATTTCTTTNGTTAGTTAGGTAGCCAG AAAAAAAAAAGAGGATTAATTTCAac                                                                                                                                                                                                                         ]
[+] EMBL AU101360             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     tnCGGTACAGGCAAGGAAGGCTGCTGCCGGAAGTACCGCCCCAAGGGGAGCCCCACCTTCTCGCCGTCCGTGCACGCCGCCAACCACCGCCAGGTGCT CGAGCTCCGCCGCCAGCAGCGGCAGAGCACCAACCCCTCCACTCCACCGCCGCCGCCGGTGTCCGCCGCCGAGCCAATCCCCGACGAGCAAAAAGAAGAGGTGGTAAGCGTGCCAGTCGCCGCCGCCGCGCCCGCCACCGACGGCGGCGCGGCGAGCTCGCTGGACGCGCTGCTGC TCGACGGGCCGTCGGCGCCGCTCATCGTGGACGGCGACGATTTC TTGGTTAGTTAGGTAGCCAG AAAAAAAAAAGAGGAATAATTTCAGCTGAGAATGAGATGAGGAATACCAATTTTTCGTTTGATTTTTCAGGAAAAACAGTTTTACCACCTGACATTGTGAATACTCGTCGATCCTGGGGAAAATCTTTGCGTGAAATTTAGCTAGTTTTGCTGCCCAGATGAACTAGTTCTGGTGCTTGGTAGCTGATGAAGTTGAAACCGGTTTTAATGGATCAAGGGGGATGGATGTTCAATGCCAAAAAA]




>consensus_4271#0
TCCGGTCAAGGAGGAGGAGGGGGTGGCGCGCGTGGTGGTGGTGGTGGCGCCGCCGCCGCC
CGTCGATCCCGGCGAGGAGGAGGCGGGCAAGAGGGCGGCGAAGAGGGCGAGGAGGTGCCT
GAACTGCGACGCGGTGGAGACGCCACAGTGGAGGTCGGGCCCGATGGGGAGGAGCACGCT
CTGCAACGCCTGCGGCGTCCGCCTCAGGGCGGTCGGCTCGCTGCCTGAACACCGCGCGCC
GGCGGCGAGGACGACGACGGCCGCCCCCGCGTCGCCGCCCGATAGCCCGATCTGGACGCC
CGGCCACAAGCCGCCCTCGTCGTCGCCCGACATCTACCTCGTCAGGAGGACACCGAAGCT
GCCGGTGACGCGGCCTCCCCGTACCAAGCAAGCTCCGCCCACAGCGCCCGCGCCCGCGCC
TCCGCCGCCGCCGCCGCAGCCGGCGTCGCCGAAGACGAAGACGAAGGCGAAGGCGAAGAA
GCCGAAGAGGAAGAGAAGCTGCGTGCACTGCGGCTCGACGGAGACGCCGCAGTGGCGGGA
GGGGCCGACGGGGCGCGGCACGCTGTGCAACGCGTGCGGCGTGCGGTACAGGCAAGGGAG
GCTGCTGCCGGAGTACCGCCCCAAGGGGAGCCCCACCTTCTCGCCGTCCGTGCACGCCGC
CAACCACCGCCAGGTGCTCGAGCTCCGCCGCCAGCAGCGGCAGAGCACCAACCCCTCCAC
TCCACCGCCGCCGCCGGTGTCCGCCGCCGAGCCAATCCCCGACGAGCAAAAAGAAGAGGT
GGTAAGCGTGCCAGTCGCCGCCGCCGCGCCCGCCACCGACGGCGGCGCGGCGAGCTCGCT
GGACGCGCTGCTGCTCGACGGGCCGTCGGCGCCGCTCATCGTGGACGGCGACGATTTCTT
GGTTAGTTAGGTAGCCAGAAAAAAAAAAGAGGAATAATTTCAGCTGAGAATGAGATGAGG
AATACCAATTTTTCGTTTGATTTTTCAGGAAAAACAGTTTTACCACCTGACATTGTGAAT
ACTCGTCGATCCTGGGGAAAATCTTTGCGTGAAATTTAGCTAGTTTTGCTGCCCAGATGA
ACTAGTTCTGGTGCTTGGTAGCTGATGAAGTTGAAACCGGTTTTAATGGATCAAGGGGGA
TGGATGTTCAATGCCAAAAAA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)