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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4308#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1573 fasta sequence
[GAGATGAAGCCCTACCTTTTGATTGGGATTTGCTCTTGAATCTGCTTCCAAACCATCGATTCATCATCCATCTCTTCCAGTCTTCCTTCGCATTCTCCTGGAAAAAAATCAGAAAAGAAAAAGGAAAAATCTCTTGTACTCTCCTCGATTCTGCAATTTTTGTTTGGTTGTCCCAACAAAAATCCCCCAATTCTCCCCAAGAACAGGAGCACACGACCCTGTTCCTGTCCCCTAGATCTGCGTGGAGGCGGCGAGAAAACCTCAATCCGGCACAAGGGGCTTGTGGTTGATACCCCGGAGCGCCGTCTAATTCCAATCTTGGTAGCTGCCGGCGGTGCTTCCGGTGGTAGACGAGGAGATGGTGCCGTGGGAAGGGTATGTGAGCGACGAGACGATGGGGACGTTCGCGCCCATCGCGCTGTACTGGGTGTACGCCGGCGGCTACCAGCTGGTGCTGCACCGGCGGCCGCTGGAGCGGTACAGGCTCCACACGCGGGCGGAGGAGGAGGAGAAGAACCTCGTCGCCCTCCCCGCCGTCGTCCGCGGCGTGCTCCTGCAGCAGCTCGTGCAGGCCATCGTCGCCATGATCCTCTTCATGGTTACTTCAGATAGTTCAGCAGTTGTAGTTCAGCCACCTATCATCATTCAAGCTTTCCAGTTTTTGGTTGCAATGCTTGTCATGGATTCATGGCAGTATTTTGTGCACCGCTACATGCACCAGAACAAATTCCTCTATCGGCATATCCATTCACAACATCATCGGCTGATAGTTCCCTACGCCATTGGGGCTCTCTACAACCATCCATTGGAGGGACTCCTTCTGGACACCGTGGGTGGTGCTATCTCCTTCTTGGTCTCTGGCATGACACCAAGGACTTCCGTGTTCTTCTTCTGTTTTGCTGTCCTCAAGACAGTTGATGATCACTGTGGACTTTGGTTACCGTATAACATCTTCCAGTCCTTGTTCCAAAACAATACTGCCTATCATGATGTCCACCATCAGCTTCAAGGCTCAAAGTACAATTACTCTCAGCCTTTTTTCTCAATCTGGGACAGAATACTGGGGACCCACATGCCCTACAACTTAGTAAGACGGAAGGAAGGCGGTTTTGAAGCAAGACCACTGCGAGACTAGCTTGAACCGATGGAAGTGTATAGAACTCCAGCAACTCAGTGAGATACAATGCTCTACCTCCCTTTCATATGTTTAGAACCTCATAGGGACCAATCTAACTTCGAAGATGTTGAAGCTGTTCAAGTACTCCCAGATTTTCTTTTTCGCGTCTTGCTGGAAGCAATACGCTAGTCGGGATTTGGGAAGACACTGAAGCTCTTGCGCGATGCTTGTTCTTACACCTGCTGTTAATCTAGTTAGATCGGTCACCTGGAATGTGTGTGGTACTGTATGGTTTGTCTTGATGGCTTTTCTCCTTGTCATGGCTATTTTTTGTGCAGAGCTGGCATTTACATTGCTGTGCAGATAGTGTATTTGGAATCACACTTCTGTATGTACCCCCAATTATTTATGTAACTGAATATCTGGGCATGGTTGGTAACTTCAAAGTTCAAACCA]
[+] EMBL AK070893 [GAGATGAAGCCCTACCTTTTGATTGGGATTTGCTCTTGAATCTGCTTCCAAACCATCGATTCATCATCCATCTCTTCCAGTCTTCCTTCGCATTCTCCTGGAAAAAAATCAGAAAAGAAAAAGGAAAAATCTCTTGTACTCTCCTCGATTCTGCAATTTTTGTTTGGTTGTCCCAACAAAAATCCCCCAATTCTCCCCAAGAACAGGAGCACACGACCCTGTTCCTGTCCCCTAGATCTGCGTGGAGGCGGCGAGAAAACCTCAATCCGGCACAAGGGGCTTGTGGTTGATACCCCGGAGCGCCGTCTAATTCCAATCTTGGTAGCTGCCGGCGGTGCTTCCGGTGGTAGACGAGGAGATGGTGCCGTGGGAAGGGTATGTGAGCGACGAGACGATGGGGACGTTCGCGCCCATCGCGCTGTACTGGGTGTACGCCGGCGGCTACCAGCTGGTGCTGCACCGGCGGCCGCTGGAGCGGTACAGGCTCCACACGCGGGCGGAGGAGGAGGAGAAGAACCTCGTCGCCCTCCCCGCCGTCGTCCGCGGCGTGCTCCTGCAGCAGCTCGTGCAGGCCATCGTCGCCATGATCCTCTTCATGGTTACTTCAGATAGTTCAGCAGTTGTAGTTCAGCCACCTATCATCATTCAAGCTTTCCAGTTTTTGGTTGCAATGCTTGTCATGGATTCATGGCAGTATTTTGTGCACCGCTACATGCACCAGAACAAATTCCTCTATCGGCATATCCATTCACAACATCATCGGCTGATAGTTCCCTACGCCATTGGGGCTCTCTACAACCATCCATTGGAGGGACTCCTTCTGGACACCGTGGGTGGTGCTATCTCCTTCTTGGTCTCTGGCATGACACCAAGGACTTCCGTGTTCTTCTTCTGTTTTGCTGTCCTCAAGACAGTTGATGATCACTGTGGACTTTGGTTACCGTATAACATCTTCCAGTCCTTGTTCCAAAACAATACTGCCTATCATGATGTCCACCATCAGCTTCAAGGCTCAAAGTACAATTACTCTCAGCCTTTTTTCTCAATCTGGGACAGAATACTGGGGACCCACATGCCCTACAACTTAGTAAGACGGAAGGAAGGCGGTTTTGAAGCAAGACCACTGCGAGACTAGCTTGAACCGATGGAAGTGTATAGAACTCCAGCAACTCAGTGAGATACAATGCTCTACCTCCCTTTCATATGTTTAGAACCTCATAGGGACCAATCTAACTTCGAAGATGTTGAAGCTGTTCAAGTACTCCCAGATTTTCTTTTTCGCGTCTTGCTGGAAGCAATACGCTAGTCGGGATTTGGGAAGACACTGAAGCTCTTGCGCGATGCTTGTTCTTACACCTGCTGTTAATCTAGTTAGATCGGTCACCTGGAATGTGTGTGGTACTGTATGGTTTGTCTTGATGGCTTTTCTCCTTGTCATGGCTATTTTTTGTGCAGAGCTGGCATTTACATTGCTGTGCAGATAGTGTATTTGGAATCACACTTCTGTATGTACCCCCAATTATTTATGTAACTGAATATCTGGGCATGGTTGGTAACTTCAAAGTTCAAACCA]
[+] EMBL CA754923 [ ACGACCCTGTTCCTGTCCCCTAGATCTGCGTGGAGGCGGCGAGAAAACCTCAATCCGGCACAAGGGGCTTGTGGTTGATACCCCGGAGCGCCGTCTAATTCCAATCTTGGTAGCTGCCGGCGGTGCTTCCGGTGGTAGACGAGGAGATGGTGCCGTGGGAAGGGTATGTGAGCGACGAGACGATGGGGACGTTCGCGCCCATCGCGCTGTACTGGGTGTACGCCGGCGGCTACCAGCTGGTGCTGCACCGGCGGCCGCTGGAGCGGTACAGGCTCCACACGCGGGCGGAGGAGGAGGAGAAGAACCTCGTCGCCCTCCCCGCCGTCGTCCGCGGCGTGCTCCTGCAGCAGCTCGTGCAGGCCATCGTCGCCATGATCCTCTTCATGGTTACTTCAGATAGTTCAGCAGTTGTAGTTCAGCCACCTATCATCATTCAAGCTTTCCAGTTTTTGGTTGCAATGCTTGTCATGGATTCATGGCAGTATTTTGTGCACCGCTACATGCACCAGAACAAATTCCTCTATCGGCATATCC TTCACAACATCATCGGCTGATAGTTCCCTACGCCATTGGGGGTCTCTACA ]
consensusID : consensus_4308#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 866 fasta sequence
[TTGGGATTTGCTCTTGAATCTGCTTCCAAACCATCGATTCATCATCCATCTCTTCCAGTCTTCCTTCGCATTCTCCTGGAAAAAAATCAGAAAAGAAAAAGGAAAAATCTCTTGTACTCTCCTCGATTCTGCAATTTTTGTTTGGCTGTCCCAACAAAAATCCCCCAATTCTCCCCAAGAACAGGAGCACACGACCCTGTTCCTGTCCCCTAGATCTGCGTGGAGGCGGCGAGAAAACCTCAATCCGGCACAAGGGGCTTGTGGTTGATACCCCGGAGCGCCGTCTAATTCCAATCTTGGTAGCTGCCGGCGGTGCTTCCGGTGGTAGACGAGGAGATGGTGCCGTGGGAAGGGTATGTGAGCGACGAGACGATGGGGACGTTCGCGCCCATCGCGCTGTACTGGGTGTACGCCGGCGGCTACCAGCTGGTGCTGCACCGGCGGCCGCTGGAGCGGTACAGGCTCCACACGCGGGCGGAGGAGGAGGAGAAGAACCTCGTCGCCCTCCCCGCCGTCGTCCGCGGCGTGCTCCTGCAGCAGCTCGTGCAGGCCATCGTCGCCATGATCCTCTTCATGGGCTGGATCCCTATAAGCCGTAGGCGTCGCTCTGGCCTGGCATCCAGCACCACCAAAACTGCAAGCTGTTCCTGCTGCAAAATAAGTTAACGCCTGTTGAGTACTGCCCGATTCAGGTCCCTGGCATCATGAGAGCCTGGAGGTTATATTTTGTGTCATATATACAACACCTATTGTATGTATAGGTGTGCACCTTTTTTTTTGTTTTTGTTGTAATTAAGCCCTAGGCCATGTACATATTACCATGTGATGTTACAGATTGGGAGAAACTGACTTCTATAGCCTACCTC]
[+] EMBL AK110696 [TTGGGATTTGCTCTTGAATCTGCTTCCAAACCATCGATTCATCATCCATCTCTTCCAGTCTTCCTTCGCATTCTCCTGGAAAAAAATCAGAAAAGAAAAAGGAAAAATCTCTTGTACTCTCCTCGATTCTGCAATTTTTGTTTGGCTGTCCCAACAAAAATCCCCCAATTCTCCCCAAGAACAGGAGCACACGACCCTGTTCCTGTCCCCTAGATCTGCGTGGAGGCGGCGAGAAAACCTCAATCCGGCACAAGGGGCTTGTGGTTGATACCCCGGAGCGCCGTCTAATTCCAATCTTGGTAGCTGCCGGCGGTGCTTCCGGTGGTAGACGAGGAGATGGTGCCGTGGGAAGGGTATGTGAGCGACGAGACGATGGGGACGTTCGCGCCCATCGCGCTGTACTGGGTGTACGCCGGCGGCTACCAGCTGGTGCTGCACCGGCGGCCGCTGGAGCGGTACAGGCTCCACACGCGGGCGGAGGAGGAGGAGAAGAACCTCGTCGCCCTCCCCGCCGTCGTCCGCGGCGTGCTCCTGCAGCAGCTCGTGCAGGCCATCGTCGCCATGATCCTCTTCATGGGCTGGATCCCTATAAGCCGTAGGCGTCGCTCTGGCCTGGCATCCAGCACCACCAAAACTGCAAGCTGTTCCTGCTGCAAAATAAGTTAACGCCTGTTGAGTACTGCCCGATTCAGGTCCCTGGCATCATGAGAGCCTGGAGGTTATATTTTGTGTCATATATACAACACCTATTGTATGTATAGGTGTGCACCTTTTTTTTTGTTTTTGTTGTAATTAAGCCCTAGGCCATGTACATATTACCATGTGATGTTACAGATTGGGAGAAACTGACTTCTATAGCCTACCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4308#0 GAGATGAAGCCCTACCTTTTGATTGGGATTTGCTCTTGAATCTGCTTCCAAACCATCGAT 60
consensus_4308#1 ----------------------TTGGGATTTGCTCTTGAATCTGCTTCCAAACCATCGAT 38
**************************************
consensus_4308#0 TCATCATCCATCTCTTCCAGTCTTCCTTCGCATTCTCCTGGAAAAAAATCAGAAAAGAAA 120
consensus_4308#1 TCATCATCCATCTCTTCCAGTCTTCCTTCGCATTCTCCTGGAAAAAAATCAGAAAAGAAA 98
************************************************************
consensus_4308#0 AAGGAAAAATCTCTTGTACTCTCCTCGATTCTGCAATTTTTGTTTGGTTGTCCCAACAAA 180
consensus_4308#1 AAGGAAAAATCTCTTGTACTCTCCTCGATTCTGCAATTTTTGTTTGGCTGTCCCAACAAA 158
*********************************************** ************
consensus_4308#0 AATCCCCCAATTCTCCCCAAGAACAGGAGCACACGACCCTGTTCCTGTCCCCTAGATCTG 240
consensus_4308#1 AATCCCCCAATTCTCCCCAAGAACAGGAGCACACGACCCTGTTCCTGTCCCCTAGATCTG 218
************************************************************
consensus_4308#0 CGTGGAGGCGGCGAGAAAACCTCAATCCGGCACAAGGGGCTTGTGGTTGATACCCCGGAG 300
consensus_4308#1 CGTGGAGGCGGCGAGAAAACCTCAATCCGGCACAAGGGGCTTGTGGTTGATACCCCGGAG 278
************************************************************
consensus_4308#0 CGCCGTCTAATTCCAATCTTGGTAGCTGCCGGCGGTGCTTCCGGTGGTAGACGAGGAGAT 360
consensus_4308#1 CGCCGTCTAATTCCAATCTTGGTAGCTGCCGGCGGTGCTTCCGGTGGTAGACGAGGAGAT 338
************************************************************
consensus_4308#0 GGTGCCGTGGGAAGGGTATGTGAGCGACGAGACGATGGGGACGTTCGCGCCCATCGCGCT 420
consensus_4308#1 GGTGCCGTGGGAAGGGTATGTGAGCGACGAGACGATGGGGACGTTCGCGCCCATCGCGCT 398
************************************************************
consensus_4308#0 GTACTGGGTGTACGCCGGCGGCTACCAGCTGGTGCTGCACCGGCGGCCGCTGGAGCGGTA 480
consensus_4308#1 GTACTGGGTGTACGCCGGCGGCTACCAGCTGGTGCTGCACCGGCGGCCGCTGGAGCGGTA 458
************************************************************
consensus_4308#0 CAGGCTCCACACGCGGGCGGAGGAGGAGGAGAAGAACCTCGTCGCCCTCCCCGCCGTCGT 540
consensus_4308#1 CAGGCTCCACACGCGGGCGGAGGAGGAGGAGAAGAACCTCGTCGCCCTCCCCGCCGTCGT 518
************************************************************
consensus_4308#0 CCGCGGCGTGCTCCTGCAGCAGCTCGTGCAGGCCATCGTCGCCATGATCCTCTTCATGG- 599
consensus_4308#1 CCGCGGCGTGCTCCTGCAGCAGCTCGTGCAGGCCATCGTCGCCATGATCCTCTTCATGGG 578
***********************************************************
consensus_4308#0 -TTACTTCAGATAGTTCAGCAGTTGTAGTTCAGCC-----ACCTATCATCATTCAAGCTT 653
consensus_4308#1 CTGGATCCCTATAAGCC-GTAGGCGTCGCTCTGGCCTGGCATCCAGCACCACCAAAACTG 637
* * * *** * * ** ** * ** * * * * * ** ** ** **
consensus_4308#0 TCCAGT-TTTTGGTTGCAATGCTTGTCATGGATTCATG-GCAGTATTTTGTGCACCGCTA 711
consensus_4308#1 CAAGCTGTTCCTGCTGCAAAATAAGTTAACGCCTGTTGAGTACTGCCCGATTCAG-GTCC 696
* ** * ***** ** * * * ** * * * * ** *
consensus_4308#0 CATGCACCAGAACAAATTCCTCTATCGGCATATCCATTCACAACATCATCGGCTGATAGT 771
consensus_4308#1 CTGGCATCATGAGAG--CCTGGAGGTTATATTTTGTGTCATATATACAACACCTATTGTA 754
* *** ** * * * ** * *** * ** * ** *
consensus_4308#0 TCCCTACGCCATTGGGGCTCTCTACAACCATCCATTGGAGGGACTCCTTCTGGACACCGT 831
consensus_4308#1 TGTATAGGT--GTGCACCTTTTTTTTTGTTTTTGTTGTAATTAAGCC--CTAGGCCATGT 810
* ** * ** ** * * * *** * * ** ** * * **
consensus_4308#0 GGGTGGTGCTATCTCCTTCTTGGTCTCTGGCATGACACCAAGGACTTCCGTGTTCTTCTT 891
consensus_4308#1 ACATATTACCATGTGAT-----GTTACAGATTGGGAGAAACTGACTTCTATAGCCTACCT 865
* * * ** * * ** * * * * ****** * ** * *
consensus_4308#0 CTGTTTTGCTGTCCTCAAGACAGTTGATGATCACTGTGGACTTTGGTTACCGTATAACAT 951
consensus_4308#1 C----------------------------------------------------------- 866
*
consensus_4308#0 CTTCCAGTCCTTGTTCCAAAACAATACTGCCTATCATGATGTCCACCATCAGCTTCAAGG 1011
consensus_4308#1 ------------------------------------------------------------
consensus_4308#0 CTCAAAGTACAATTACTCTCAGCCTTTTTTCTCAATCTGGGACAGAATACTGGGGACCCA 1071
consensus_4308#1 ------------------------------------------------------------
consensus_4308#0 CATGCCCTACAACTTAGTAAGACGGAAGGAAGGCGGTTTTGAAGCAAGACCACTGCGAGA 1131
consensus_4308#1 ------------------------------------------------------------
consensus_4308#0 CTAGCTTGAACCGATGGAAGTGTATAGAACTCCAGCAACTCAGTGAGATACAATGCTCTA 1191
consensus_4308#1 ------------------------------------------------------------
consensus_4308#0 CCTCCCTTTCATATGTTTAGAACCTCATAGGGACCAATCTAACTTCGAAGATGTTGAAGC 1251
consensus_4308#1 ------------------------------------------------------------
consensus_4308#0 TGTTCAAGTACTCCCAGATTTTCTTTTTCGCGTCTTGCTGGAAGCAATACGCTAGTCGGG 1311
consensus_4308#1 ------------------------------------------------------------
consensus_4308#0 ATTTGGGAAGACACTGAAGCTCTTGCGCGATGCTTGTTCTTACACCTGCTGTTAATCTAG 1371
consensus_4308#1 ------------------------------------------------------------
consensus_4308#0 TTAGATCGGTCACCTGGAATGTGTGTGGTACTGTATGGTTTGTCTTGATGGCTTTTCTCC 1431
consensus_4308#1 ------------------------------------------------------------
consensus_4308#0 TTGTCATGGCTATTTTTTGTGCAGAGCTGGCATTTACATTGCTGTGCAGATAGTGTATTT 1491
consensus_4308#1 ------------------------------------------------------------
consensus_4308#0 GGAATCACACTTCTGTATGTACCCCCAATTATTTATGTAACTGAATATCTGGGCATGGTT 1551
consensus_4308#1 ------------------------------------------------------------
consensus_4308#0 GGTAACTTCAAAGTTCAAACCA 1573
consensus_4308#1 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||