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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4360#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence
[AGGGGTACACAAGACCCTGGTACCTTAGTAAAGCCTACTTCTGAATTTTTCACCACGAGTTAAAAGTTCGCCCTAAGGATACCATGAGAAGATATGAAATAAATGGTCACCATAGATTTATTTTCAGCTAGAGTTGGAAGCTGGAGCCCAGGCCTTGATGTGCCCACCCTGATATTTCTGTGAGTTCTCCATCCGCCTCTGTTTCTTGAGCATCTCACGAGTGAGCGTGCTAAAGCCTTCTTGCCACCTTGAGGGAATGGACACACTTTGGTGGAGCCTCAACAACTTGCACCGAATGTTAACCTGTGTTGCACGTGCCCACGGGAATTCTGGAAGAGTTTCCCATGCTTGGGCCGCCCTTTGCGCTTGCTTTTTCTGTGTTGCATCCACGGTGACTTGCTTGCCTTTTGCTGGCTTGCTGTTGAAACTGGCACACTGGCCTGCATCCCCCATTGCTGTTAAAACGAAAGATGCCCCAGCTGTGTGCCCCCTCTTCCGCTTCCTTCGGTTTTCATCTACACTCGCGTTCTCATCGCCCACCGGTCCATCCTTGCGTACATCTAGAGTTCTTACTGCTTTTCTACCCAAAAAAAAAA]
[+] EMBL BI812258 [AGGGGTACACAAGACCCTGGTACCTTAGTAAAGCCTACTTCTGAATTTTTCACCACGAGTTAAAAGTTCGCCCTAAGGATACCATGAGAAGATATGAAATAAATGGTCACCATAGATTTATTTTCAGCTAGAGTTGGAAGCTGGAGCCCAGGCCTTGATGTGCCCACCCTGATATTTCTGTGAGTTCTCCATCCGCCTCTGTTTCTTGAGCATCTCACGAGTGAGCGTGCTAAAGCCTTCTTGCCACCTTGAGGGAATGGACACACTTTGGTGGAGCCTCAACAACTTGCACCGAATGTTAACCTGTGTTGCACGTGCCCACGGGAATTCTGGAAGAGTTTCCCATGCTTGGGCCGCCCTTTGCGCTTGCTTTTTCTGTGTTGCATCCACGGTGACTTGCTTGCCTTTTGCTGGCTTGCTGTTGAAACTGGCACACTGGCCTGCATCCCCCATTGCTGTTAAAACGAAAGATGCCCCAGCTGTGTGCCCCCTCTTCCGCTTCCTTCGGTTTTCATCTACACTCGCGTTCTCATCGCCCACCGGTCCATCCTTGCGTACATCTAGAGTTCTTACTGCTTTTCTACCCAAAAAAAAAA]
consensusID : consensus_4360#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 509 fasta sequence
[TTTTTTTACCAGTATTAAAAAGATTACTTCAAGAAAATAAACAGAGTAGATGACCCAGAACACAAAAATCAACGTTTGTTACAAAATTGCCTACAAGAGGGTACAAGACCTGTACT-ATAAGCNACTCTGATTTCAGCAGAGTAAGTTCGCTAAGGATACAATGAGAAGATATGAAATAAATGGTCACAATGATTTATTTTCAGCTAGAGTTGGAAGCTGGAGCCCAGGCCTTGATGTCCAACCCTTGATATTTCTGTAGTTCTCAATCGCCTCTTTTCTTAGCATCTCACGAGTAGCGTCTAAAGCATTCTTCACCTTAGGGNATGACAACTTTGGTGGAGCCTCAACAACTTCACCGNATTTAACCTTTTCACGTCCAGGGAATTCTGGAAGAGTTTCCATCTTGTCGCCCTTGCGCTTCTTTTTCTTTTCATCCAGGTACTTCTTCCTTTTCNGCTTCTTTGAAACTGCAACTGCCTCATCTAATTCTTTAAAACGAAGATCCACAG]
[-] EMBL AU077859 [TTTTTTTACCAGTATTAAAAAGATTACTTCAAGAAAATAAACAGAGTAGATGACCCAGAACACAAAAATCAACGTTTGTTACAAAATTGCCTACAAGAGGGTACAAGACCTGTACT ATAAGCNACTCTGATTTCAGCAGAGTAAGTTCGCTAAGGATACAATGAGAAGATATGAAATAAATGGTCACAATGATTTATTTTCAGCTAGAGTTGGAAGCTGGAGCCCAGGCCTTGATGTCCAACCCTTGATATTTCTGTAGTTCTCAATCGCCTCTTTTCTTAGCATCTCACGAGTAGCGTCTAAAGCATTCTTCACCTTAGGGNATGACAACTTTGGTGGAGCCTCAACAACTTCACCGNATTTAACCTTTTCACGTCCAGGGAATTCTGGAAGAGTTTCCATCTTGTCGCCCTTGCGCTTCTTTTTCTTTTCATCCAGGTACTTCTTCCTTTTCNGCTTCTTTGAAACTGCAACTGCCTCATCTAATTCTTTAAAACGAAGATCCACA ]
[-] EMBL OSS14590A [ nCCTGTACTAAAAAGCNACCCTGATTNCAGCAGAGTAAGTCCGCTAAGGATACAATGAGAAGATATGAAATAAAGGGTCACAATGATTTATTTTCAGCTAGAGTTGGAAGCTGGAGCCCAGGCCTTGATGTCCAACCCTTGATATTTCTGTAGTTCTNAATCGCCTCTTTTCTTAGCATCTCACGAGTAGCGTCTAAAGCATTCTTCACCTTAGGGAATGACAACTTTGGTGGAGCCTCAACAACTTCACCGAATTTAACCTTTTCACGTCCAGGGAATTCTGGAAGAGTTTCCATCTTGTCGCCCTTGCGCTTCTTTTTCTTTTCATCCAGGTACTTCTTCCTTTTCTGCTTCTTTGAAACTGCAACTGCCTCATCTAATTCTTTAAAACGAAGATCCACAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4360#0 ------------------------------------------------------------
consensus_4360#1 TTTTTTTACCAGTATTAAAAAGATTACTTCAAGAAAATAAACAGAGTAGATGACCCAGAA 60
consensus_4360#0 --------------------------AGGGGTACACAAGACCCTGGTACCT-TAGTAAAG 33
consensus_4360#1 CACAAAAATCAACGTTTGTTACAAAATTGCCTACAAGAGGGTACAAGACCTGTACTATAA 120
* **** ** **** ** ** *
consensus_4360#0 CCTACTTCTGAATTTTTCACCACGAGTTAAAAGTTCGCCCTAAGGATACCATGAGAAGAT 93
consensus_4360#1 GCNACT-CTGA---TTTCAGCA-GAGT---AAGTTCGC--TAAGGATACAATGAGAAGAT 170
* *** **** ***** ** **** ******** ********* **********
consensus_4360#0 ATGAAATAAATGGTCACCATAGATTTATTTTCAGCTAGAGTTGGAAGCTGGAGCCCAGGC 153
consensus_4360#1 ATGAAATAAATGGTCACAAT-GATTTATTTTCAGCTAGAGTTGGAAGCTGGAGCCCAGGC 229
***************** ** ***************************************
consensus_4360#0 CTTGATGTGCCCACCCTGATATTTCTGTGAGTTCTCCATCCGCCTCTGTTTCTTGAGCAT 213
consensus_4360#1 CTTGATGTCCAACCCTTGATATTTCTGT-AGTTCTCAATC-GCCTCT-TTTCTT-AGCAT 285
******** * ** ************ ******* *** ****** ****** *****
consensus_4360#0 CTCACGAGTGAGCGTGCTAAAGCCTTCTTGCCACCTTGAGGGAATGGACACACTTTGGTG 273
consensus_4360#1 CTCACGAGT-AGCGT-CTAAAGCATTCTT--CACCTT-AGGGNATG-ACA-ACTTTGGTG 338
********* ***** ******* ***** ****** **** *** *** *********
consensus_4360#0 GAGCCTCAACAACTTGCACCGAATGTTAACCTGTGTTGCACGTGCCCACGGGAATTCTGG 333
consensus_4360#1 GAGCCTCAACAACTT-CACCGNAT-TTAACCT---TTTCACGT--CCA-GGGAATTCTGG 390
*************** ***** ** ******* ** ***** *** ***********
consensus_4360#0 AAGAGTTTCCCATGCTTGGGCCGCCCTTTGCGCTTGCTTTTTCTGTGTTGCATCCACGGT 393
consensus_4360#1 AAGAGTTTCC-ATCTT---GTCGCCCTT-GCGCTT-CTTTTTCT---TTTCATCCAGG-- 439
********** ** * * ******* ****** ******** ** ****** *
consensus_4360#0 GACTTGCTTGCCTTTTGCTGGCTTGCTGTTGAAACTGGCACACTGGCCTGCATCCCCCAT 453
consensus_4360#1 ----TACTTCTTCCTTTTCNGCTTCTT--TGAAACTGCAAC-------TGCCTCATCTAA 486
* *** ** **** * ******** ** *** ** * *
consensus_4360#0 TGCTGTTAAAACGAAAGATGCCCCAGCTGTGTGCCCCCTCTTCCGCTTCCTTCGGTTTTC 513
consensus_4360#1 TTCT-TTAAAACGAA-GAT-CCACAG---------------------------------- 509
* ** ********** *** ** ***
consensus_4360#0 ATCTACACTCGCGTTCTCATCGCCCACCGGTCCATCCTTGCGTACATCTAGAGTTCTTAC 573
consensus_4360#1 ------------------------------------------------------------
consensus_4360#0 TGCTTTTCTACCCAAAAAAAAAA 596
consensus_4360#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||