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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4404#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1486 fasta sequence
[TAGTAGCAATAGAGCATCAACATAGGAGGCAGCATACCAATGGAGAGCTTGTGTGGGCAGCTTGAGCATGAACATGAGCAGCAGCTGCACCAATCCTCCTCATCTTCACTTCTCCCCTACTGCTTCCTTTCTGCTCCAGAGCCTCTTCCTGTCCCAGGCTTCCCTGCCGGCTGCAGCAACCTTGAAGAGAAGGCAGCAGCAGCCATGGCGGCCTATGAGTATGAGAGCAGCAGCTGCAGCTCCCTTGACCCCACCTCAATGCCAATGGTGTACTCACCAATAGTGCTGCAGCCACAGGAGTGCCCTCTTTCCTTTGTCTTTGACAATGCCGCTGCCGCTGCCGGCGACAACAAATGGGTGCCTGGCATTCAAGGAAGTTGCCCTTGTTCATTGGGCTCAACTCAAGATATGGATGCAAGTTGGGGCAAGAGTAGAAAGCACAAGAGGAGCAATGTGGGCTTGAAGGGACTTGAGGAGAAAAAGGCAAGAAGGGTGGTACTACATCAACATGATGATGATGTGAAGAAGAAGGCCAAGGAGGCAGCAGGTGGGGAGCCACCAGCTGGGTACATTCATGTGAGGGCAAGGAGAGGCCAAGCAACAGACAGCCACAGCCTTGCTGAGAGGGTGAGAAGGGAGAAGATCAGTGAGAGGATGAAGATGCTGCAAAGCCTGGTTCCTGGTTGTGACAAGGTCACAGGGAAAGCCCTCATGCTAGATGAGATCATCAGCTATGTGCAATCTCTGCAGAACCAAGTTGAGTTTCTGTCCATGAAGCTTGCCTCCCTTAGCCCTTTGATGTATGAGTTTGGACCGGGCATTGATATGCACCCAGATGTTCTTCGACAGCTTGCAAAGATGCCACATGAGATGGTGCAGTGCATGGGCCAAATGGGGAGTACAGGCATTTCACTCCAAGGACTAGGAGGAGGACCCACAGGCTTTGCTCAGGATGGCAGCAGCCACATTAACATGGTGGTGATGCAAGTTGGAGAGCAAGGCCAGCAGCAGGGCTCTCTTCACCAGGTCGAGATGAGCAGCCACTGCTTCTTTCATTAGTAGTAGAACCCATGCATATTCTGGAATGGCCACGAAGCAGCATCACATAGAGGAGGAGATGCCGAATCAACAAGTGAAGTGAAGTGAGCAAGCTGAAGAAGAAGAGTGGGGCAAGCCGACAGAGTTGAACCTCCTGAAGATCTCGCAAGGATCCTTTGGTTGCTGGCTCAGCTGTACCATCTCCTCCTGGGCTCCAAAATCCACACTATCGATATCTCTGCCTTCACCGTCACCAAGACTGCATGCAGACAGTACCAAGACGAGGACATGTACTGTTGCTCCTCCTGCGTTTCGCTTCATTCATTCATCTGCTGCTGTGCTGTTCCTCCCCCTCTTCTGTGTGTTGCATCTGTAGATACTCTACTCCCTTTTCATGTGTTTAATACTCCAGAAATGTGCATGTGTGTGTGTGCAATATGCATGCCTT]
[+] EMBL AK065864 [TAGTAGCAATAGAGCATCAACATAGGAGGCAGCATACCAATGGAGAGCTTGTGTGGGCAGCTTGAGCATGAACATGAGCAGCAGCTGCACCAATCCTCCTCATCTTCACTTCTCCCCTACTGCTTCCTTTCTGCTCCAGAGCCTCTTCCTGTCCCAGGCTTCCCTGCCGGCTGCAGCAACCTTGAAGAGAAGGCAGCAGCAGCCATGGCGGCCTATGAGTATGAGAGCAGCAGCTGCAGCTCCCTTGACCCCACCTCAATGCCAATGGTGTACTCACCAATAGTGCTGCAGCCACAGGAGTGCCCTCTTTCCTTTGTCTTTGACAATGCCGCTGCCGCTGCCGGCGACAACAAATGGGTGCCTGGCATTCAAGGAAGTTGCCCTTGTTCATTGGGCTCAACTCAAGATATGGATGCAAGTTGGGGCAAGAGTAGAAAGCACAAGAGGAGCAATGTGGGCTTGAAGGGACTTGAGGAGAAAAAGGCAAGAAGGGTGGTACTACATCAACATGATGATGATGTGAAGAAGAAGGCCAAGGAGGCAGCAGGTGGGGAGCCACCAGCTGGGTACATTCATGTGAGGGCAAGGAGAGGCCAAGCAACAGACAGCCACAGCCTTGCTGAGAGGGTGAGAAGGGAGAAGATCAGTGAGAGGATGAAGATGCTGCAAAGCCTGGTTCCTGGTTGTGACAAGGTCACAGGGAAAGCCCTCATGCTAGATGAGATCATCAGCTATGTGCAATCTCTGCAGAACCAAGTTGAGTTTCTGTCCATGAAGCTTGCCTCCCTTAGCCCTTTGATGTATGAGTTTGGACCGGGCATTGATATGCACCCAGATGTTCTTCGACAGCTTGCAAAGATGCCACATGAGATGGTGCAGTGCATGGGCCAAATGGGGAGTACAGGCATTTCACTCCAAGGACTAGGAGGAGGACCCACAGGCTTTGCTCAGGATGGCAGCAGCCACATTAACATGGTGGTGATGCAAGTTGGAGAGCAAGGCCAGCAGCAGGGCTCTCTTCACCAGGTCGAGATGAGCAGCCACTGCTTCTTTCATTAGTAGTAGAACCCATGCATATTCTGGAATGGCCACGAAGCAGCATCACATAGAGGAGGAGATGCCGAATCAACAAGTGAAGTGAAGTGAGCAAGCTGAAGAAGAAGAGTGGGGCAAGCCGACAGAGTTGAACCTCCTGAAGATCTCGCAAGGATCCTTTGGTTGCTGGCTCAGCTGTACCATCTCCTCCTGGGCTCCAAAATCCACACTATCGATATCTCTGCCTTCACCGTCACCAAGACTGCATGCAGACAGTACCAAGACGAGGACATGTACTGTTGCTCCTCCTGCGTTTCGCTTCATTCATTCATCTGCTGCTGTGCTGTTCCTCCCCCTCTTCTGTGTGTTGCATCTGTAGATACTCTACTCCCTTTTCATGTGTTTAATACTCCAGAAATGTGCATGTGTGTGTGTGCAATATGCATGCCTT]
consensusID : consensus_4404#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 556 fasta sequence
[TGTTCTTTGCAAATGGTGACTGATGATGTGTTAACTGTTGCATTTACCAGAC---TGCAGCTATCTAGTAACATTTGTACAAACTAGGAATGGCCACGAAGCAGCATCACATAGAGGAGGAGATGCCGAATCAACAAGTGAAGTGAAGTGAGCAAGCTGAAGAAGAAGAGTGGGGCAAGCCGACAGAGTTGAACCTCCTGAAGATCTCGCAAGGATCCTTTGGTTGCTGGCTCAGCTGTACCATCTCCTCCTGGGCTCCAAAATCCACACTATCGATATCTCTGCCTTCACCGTCACCAAGACTGCATGCAGACAGTACCAAGACGAGGACATGTACTGTTGCTCCTCCTGCGTTTCGCTTCATTCATTCATCTGCTGCTGTGCTGTTCCTCCCCCTCTTCTGTGTGTTGCATCTGTAGATACTCTACTCCCTTTTCATGTGTTTAATACTCCAGAAATGTGCA--TGTGTGTGTGTGCAATATGCATGCCTTGNCAATGTGTACTTGATGCTGCCAGCCTGATCGATATGACTTGGCCTCCTGCCTCCAAAAAAAAAAAA]
[+] EMBL CA753763 [TGTTCTTTGCAAATGGTGACTGATGATGTGTTAACTGTTGCATTTACCAGAC TGCAGCTATCTAGTAACATTTGTACAAACTAGGAATGGCCACGAAGCAGCATCACATAGAGGAGGAGATGCCGAATCAACAAGTGAAGTGAAGTGAGCAAGCTGAAGAAGAAGAGTGGGGCAAGCCGACAGAGTTGAACCTCCTGAAGATCTCGCAAGGATCCTTTGGTTGCTGGCTCAGCTGTACCATCTCCTCCTGGGCTCCAAAATCCACACTATCGATATCTCTGCCTTCACCGTCACCAAGACTGCATGCAGACAGTACCAAGACGAGGACATGTACTGTTGCTCCTCCTGCGTTTCGCTTCATTCATTCATCTGCTGCTGTGCTGTTCCTCCCCCTCTTCTGTGTGTTGCATCTGTAGATACTCTACTCCCTTTTCATGTGTTTAATACTCCAGAAATGTGCA TGTGTGTGTGTGCAATATGCATGCCTTGNCAATGTGTACTTGATGCTGCCAGCCTGATCGATATGACTTGGCCTCCTGCCTCCAAAAAAAAAAAA]
[+] EMBL CA766753 [ CTGTTGCATTTGCCAGACTAATGCAGCTATCTAGTAACATTTGTACAAACTAGGAATGGCCACGAAGCAGCATCACATAGAGGAGGAGATGCCGAATCAACAAGTGAAGTGAAGTGAGCAAGCTGAAGAAGAAGAGTGGGGCAAGCCGACAGAGTTGAACCTCCTGAAGATCTCGCAAGGATCCTTTGGTTGCTGGCTCAGCTGTACCATCTCCTCCTGGGCTCCAAAATCCACACTATCGATATCTCTGCCTTCACCGTCACCAAGACTGCATGCAGACAGTACCAAGACGAGGACATGTACTGTTGCTCCTCCTGCGTTTCGCTTCATTCATTCATCTGCTGCTGTGCTGTTCCTCCCCCTCTTCTGTGTGTTGCATCTGTAGATACTCTACTCCCTTTTCATGTGTTTAATACTCCAGAAATGTGCATGTGTGTGTGTGTGCAATATGCATGCCTTGCAAATGTGTACTTGATGCTGCCAGCCTGATCGATATGACTTGGCCTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4404#0 TAGTAGCAATAGAGCATCAACATAGGAGGCAGCATACCAATGGAGAGCTTGTGTGGGCAG 60
consensus_4404#1 ------------------------------------------------------------
consensus_4404#0 CTTGAGCATGAACATGAGCAGCAGCTGCACCAATCCTCCTCATCTTCACTTCTCCCCTAC 120
consensus_4404#1 ------------------------------------------------------------
consensus_4404#0 TGCTTCCTTTCTGCTCCAGAGCCTCTTCCTGTCCCAGGCTTCCCTGCCGGCTGCAGCAAC 180
consensus_4404#1 ------------------------------------------------------------
consensus_4404#0 CTTGAAGAGAAGGCAGCAGCAGCCATGGCGGCCTATGAGTATGAGAGCAGCAGCTGCAGC 240
consensus_4404#1 ------------------------------------------------------------
consensus_4404#0 TCCCTTGACCCCACCTCAATGCCAATGGTGTACTCACCAATAGTGCTGCAGCCACAGGAG 300
consensus_4404#1 ------------------------------------------------------------
consensus_4404#0 TGCCCTCTTTCCTTTGTCTTTGACAATGCCGCTGCCGCTGCCGGCGACAACAAATGGGTG 360
consensus_4404#1 ------------------------------------------------------------
consensus_4404#0 CCTGGCATTCAAGGAAGTTGCCCTTGTTCATTGGGCTCAACTCAAGATATGGATGCAAGT 420
consensus_4404#1 ------------------------------------------------------------
consensus_4404#0 TGGGGCAAGAGTAGAAAGCACAAGAGGAGCAATGTGGGCTTGAAGGGACTTGAGGAGAAA 480
consensus_4404#1 ------------------------------------------------------------
consensus_4404#0 AAGGCAAGAAGGGTGGTACTACATCAACATGATGATGATGTGAAGAAGAAGGCCAAGGAG 540
consensus_4404#1 ------------------------------------------------------------
consensus_4404#0 GCAGCAGGTGGGGAGCCACCAGCTGGGTACATTCATGTGAGGGCAAGGAGAGGCCAAGCA 600
consensus_4404#1 ------------------------------------------------------------
consensus_4404#0 ACAGACAGCCACAGCCTTGCTGAGAGGGTGAGAAGGGAGAAGATCAGTGAGAGGATGAAG 660
consensus_4404#1 ------------------------------------------------------------
consensus_4404#0 ATGCTGCAAAGCCTGGTTCCTGGTTGTGACAAGGTCACAGGGAAAGCCCTCATGCTAGAT 720
consensus_4404#1 ------------------------------------------------------------
consensus_4404#0 GAGATCATCAGCTATGTGCAATCTCTGCAGAACCAAGTTGAGTTTCTGTCCATGAAGCTT 780
consensus_4404#1 ------------------------------------------------------------
consensus_4404#0 GCCTCCCTTAGCCCTTTGATGTATGAGTTTGGACCGGGCATTGATATGCACCCAGATGTT 840
consensus_4404#1 ------------------------------------------------------------
consensus_4404#0 CTTCGACAGCTTGCAAAGATGCCACATGAGATGGTGCAGTGCATGGGCCAAATGGGGAGT 900
consensus_4404#1 ------------------------------------------------------------
consensus_4404#0 ACAGGCATTTCACTCCAAGGACTAGGAGGAGGACCCACAGGCTTTGCTCAGGATGGCAGC 960
consensus_4404#1 ------------------------------------------------------------
consensus_4404#0 AGCCACATTAACATGGTGGTGATGCAAGTTGGAGAGCAAGGCCAGCAGCAGGGCTCTCTT 1020
consensus_4404#1 ----------------------TGTTCTTTGCAAATGGTGACTGATGATGTG------TT 32
** *** * * * * * **
consensus_4404#0 CACCAGGTCGAGATGAGCAGCCACTGCTTCTTTCATTAGTAGTAGAACCCATGCATATTC 1080
consensus_4404#1 AACT--GTTGCATTTACCAG--ACTGCAGCTATC-----TAGTAACATTTGTACAAACTA 83
** ** * * * *** ***** ** ** ***** * * ** * *
consensus_4404#0 TGGAATGGCCACGAAGCAGCATCACATAGAGGAGGAGATGCCGAATCAACAAGTGAAGTG 1140
consensus_4404#1 -GGAATGGCCACGAAGCAGCATCACATAGAGGAGGAGATGCCGAATCAACAAGTGAAGTG 142
***********************************************************
consensus_4404#0 AAGTGAGCAAGCTGAAGAAGAAGAGTGGGGCAAGCCGACAGAGTTGAACCTCCTGAAGAT 1200
consensus_4404#1 AAGTGAGCAAGCTGAAGAAGAAGAGTGGGGCAAGCCGACAGAGTTGAACCTCCTGAAGAT 202
************************************************************
consensus_4404#0 CTCGCAAGGATCCTTTGGTTGCTGGCTCAGCTGTACCATCTCCTCCTGGGCTCCAAAATC 1260
consensus_4404#1 CTCGCAAGGATCCTTTGGTTGCTGGCTCAGCTGTACCATCTCCTCCTGGGCTCCAAAATC 262
************************************************************
consensus_4404#0 CACACTATCGATATCTCTGCCTTCACCGTCACCAAGACTGCATGCAGACAGTACCAAGAC 1320
consensus_4404#1 CACACTATCGATATCTCTGCCTTCACCGTCACCAAGACTGCATGCAGACAGTACCAAGAC 322
************************************************************
consensus_4404#0 GAGGACATGTACTGTTGCTCCTCCTGCGTTTCGCTTCATTCATTCATCTGCTGCTGTGCT 1380
consensus_4404#1 GAGGACATGTACTGTTGCTCCTCCTGCGTTTCGCTTCATTCATTCATCTGCTGCTGTGCT 382
************************************************************
consensus_4404#0 GTTCCTCCCCCTCTTCTGTGTGTTGCATCTGTAGATACTCTACTCCCTTTTCATGTGTTT 1440
consensus_4404#1 GTTCCTCCCCCTCTTCTGTGTGTTGCATCTGTAGATACTCTACTCCCTTTTCATGTGTTT 442
************************************************************
consensus_4404#0 AATACTCCAGAAATGTGCATGTGTGTGTGTGCAATATGCATGCCTT-------------- 1486
consensus_4404#1 AATACTCCAGAAATGTGCATGTGTGTGTGTGCAATATGCATGCCTTGNCAATGTGTACTT 502
**********************************************
consensus_4404#0 ------------------------------------------------------
consensus_4404#1 GATGCTGCCAGCCTGATCGATATGACTTGGCCTCCTGCCTCCAAAAAAAAAAAA 556
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||