|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_443#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1748 fasta sequence
[GCCGTCACCCTCCGCGGCGGCGTGCGCTGCTCCGCTTCACTCCCTTCCATCCATCCCCGGTCGCCGTCGTCTCCGCCCAGGCCAGCACTGACTTGTCCGTTTTATCCGCCTCCGCTTCTCTTCCACTGACCCCTTCTTGGCCTTTTTGGGTGTCTCTCATCCATGAGAGTGATTAGTTGGAGGTTACCAGCTGTAAGTACACCAACAAGCCCTAATAATAGCGAGGCTCGTCAGTTGGGAGGAGGGAGTGGCGGGAAGGAGGAGGGGAAGTTGCTGGGCCAGCGTTGTGGCGGCGGCGGCCGGAGTCGTCGGACGCCATGGAGGCCGTCCAGCCGCCGGTGTTGAGTGACAGATTGAACCCGTTGATCCACCACAGATCAGCTTTTCCAGCCAGTGTTGTGCAGCCTCAAGATCATGGTGACAGCGTTCCGGGCTTGTGCAGTGGATCTTTTATTGACACCAGGGGCAGGCTTAGCAGTGGATCAATGACATCTGAAGATTCACCGGCACTGACGCCGAGATGGTTGTCCATCAAGTCCAACTCCAGCTCTGACAACTGCTTTGAAGGATCGAAAAGAGCGGTATCGTGGTCAGACCGGCATGTTTTCAATCCAAATGGGCAGGTCAACTATGCAGAATTCATGGATTTGATGGAACAGGAGCTTGATACCCAACTTGATAGGCTCAAGGGGGATGTAACTGGGCTGGAAAACTTTGCGTTGCCGGATAATGGGTATATAATTGGTACACACCTGGGCATGTCTCTTGATGTGATGCTGATTGAGATTGATGAGAGGTTCAATGCCTTGAAGTTACTGCTGGCCACAGTGTTTCGGAAGGCTAGGGAGATGGACAGCTCGTCGGTGTCTGATCTGCAGTGGGAGCATGAGTTGCAATTGGAGGTCATCAACATTACAATAGGAGAATTCATCAGTGGCTTGCAAGAGGAGATGGAGAGGAAGCTGTATGAGCAAATTTCTATGACAAACTCCATGAGTAAAAATTGGCAGGATGCCATAGCTCAATTTGCCAGCATGCGCGATGATCTGGGTGCTCTTTCTAAGCTATTGTTGCCCTCACTACAAGAATCACATATTTCTCACAGCAAGCATGAAACTTCAAGCAACAGGAGCAATAGGTGGAAGTACAACATCTTTGGAAAGAAAAACAAGGAGGATCATTCATCTCGCGCGGAGGAAAATAAGAGTTTCAGGAAACAGAAGTCCATGGTTGTCTTGGAAAAATCTGACTTCCGTCACCTGAATGGTATGAGTAAAGAGGAGATCATAACTTATTTTAAGTCCGAAATGAGCAAATTGAAGAGGATGCATGAATTGGATTTGCAGGAGAAGACCGAGGAGCTCTTCAAATTCAAACGGGAGAAGGGATTGCTTACTCTCAAGAATGATGTGGAATTTGAGCCGTTAAGAAAGAAAATTCCACAGATTATTTCTAGAATGGACCAAATCATTTCGAAGAACATAAAGATGCCTTCACTTTGCATGACTAATGATGGACTGGATGAAAGATGCATATCAGCAAAAAGAATCGATTCTTTATATTACGAAAATCAGCATCTTAGAGGTTTGCTTGCAGATAATATGAAGGATGTCAAGGAATTATCATCTCAGCTATCTGAAGCCAGTAAAGAAATGTCTATTCAGTTGTCATCAGAAGACGATCTCCTGAGACAAATTGCCAAAATTAAAGAGTATGGAGTTTGTTTCAACCTATTGGTATGAATCTGT]
[+] EMBL AK109744 [GCCGTCACCCTCCGCGGCGGCGTGCGCTGCTCCGCTTCACTCCCTTCCATCCATCCCCGGTCGCCGTCGTCTCCGCCCAGGCCAGCACTGACTTGTCCGTTTTATCCGCCTCCGCTTCTCTTCCACTGACCCCTTCTTGGCCTTTTTGGGTGTCTCTCATCCATGAGAGTGATTAGTTGGAGGTTACCAGCTGTAAGTACACCAACAAGCCCTAATAATAGCGAGGCTCGTCAGTTGGGAGGAGGGAGTGGCGGGAAGGAGGAGGGGAAGTTGCTGGGCCAGCGTTGTGGCGGCGGCGGCCGGAGTCGTCGGACGCCATGGAGGCCGTCCAGCCGCCGGTGTTGAGTGACAGATTGAACCCGTTGATCCACCACAGATCAGCTTTTCCAGCCAGTGTTGTGCAGCCTCAAGATCATGGTGACAGCGTTCCGGGCTTGTGCAGTGGATCTTTTATTGACACCAGGGGCAGGCTTAGCAGTGGATCAATGACATCTGAAGATTCACCGGCACTGACGCCGAGATGGTTGTCCATCAAGTCCAACTCCAGCTCTGACAACTGCTTTGAAGGATCGAAAAGAGCGGTATCGTGGTCAGACCGGCATGTTTTCAATCCAAATGGGCAGGTCAACTATGCAGAATTCATGGATTTGATGGAACAGGAGCTTGATACCCAACTTGATAGGCTCAAGGGGGATGTAACTGGGCTGGAAAACTTTGCGTTGCCGGATAATGGGTATATAATTGGTACACACCTGGGCATGTCTCTTGATGTGATGCTGATTGAGATTGATGAGAGGTTCAATGCCTTGAAGTTACTGCTGGCCACAGTGTTTCGGAAGGCTAGGGAGATGGACAGCTCGTCGGTGTCTGATCTGCAGTGGGAGCATGAGTTGCAATTGGAGGTCATCAACATTACAATAGGAGAATTCATCAGTGGCTTGCAAGAGGAGATGGAGAGGAAGCTGTATGAGCAAATTTCTATGACAAACTCCATGAGTAAAAATTGGCAGGATGCCATAGCTCAATTTGCCAGCATGCGCGATGATCTGGGTGCTCTTTCTAAGCTATTGTTGCCCTCACTACAAGAATCACATATTTCTCACAGCAAGCATGAAACTTCAAGCAACAGGAGCAATAGGTGGAAGTACAACATCTTTGGAAAGAAAAACAAGGAGGATCATTCATCTCGCGCGGAGGAAAATAAGAGTTTCAGGAAACAGAAGTCCATGGTTGTCTTGGAAAAATCTGACTTCCGTCACCTGAATGGTATGAGTAAAGAGGAGATCATAACTTATTTTAAGTCCGAAATGAGCAAATTGAAGAGGATGCATGAATTGGATTTGCAGGAGAAGACCGAGGAGCTCTTCAAATTCAAACGGGAGAAGGGATTGCTTACTCTCAAGAATGATGTGGAATTTGAGCCGTTAAGAAAGAAAATTCCACAGATTATTTCTAGAATGGACCAAATCATTTCGAAGAACATAAAGATGCCTTCACTTTGCATGACTAATGATGGACTGGATGAAAGATGCATATCAGCAAAAAGAATCGATTCTTTATATTACGAAAATCAGCATCTTAGAGGTTTGCTTGCAGATAATATGAAGGATGTCAAGGAATTATCATCTCAGCTATCTGAAGCCAGTAAAGAAATGTCTATTCAGTTGTCATCAGAAGACGATCTCCTGAGACAAATTGCCAAAATTAAAGAGTATGGAGTTTGTTTCAACCTATTGGTATGAATCTGT]
consensusID : consensus_443#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 792 fasta sequence
[GACTTCCGTCACCTGAATGGTATGAGTAAAGAGGAGATCATAACTTATTTTAAGTCCGAAATGAGCAAATTGAAGAGGATGCATGAATTGGATTTGCAGGAGAAGACCGAGGAGCTCTTCAAATTCAAACGGGAGAAGGGATTGCTTACTCTCAAGAATGATGTGGAATTTGAGCCGTTAAGAAAGAAAATTCCACAGATTATTTCTAGAATGGACCAAATCATTTCGAAGAACATAAAGATGCCTTCACTTTGCATGACTAATGATGGACTGGATGAAAGATGCATATCAGCAAAAAGAATCGATTCTTTATATTACGAAAATCAGCATCTTAGAGGTTTGCTTGCAGATAATATGAAGGATGTCAAGGAATTATCATCTCAGCTATCTGAAGCCAGTAAAGAAATGTCTATTCAGTTGTCATCAGAAGACGATCTCCTGAGACAAATTGCCAAAATTAAAGAAGAATATGATGATCTCCAAATCGAAGCCGGTGTTAGGGATGGAGTGTATCAAACTATTACAAGAAAGTTGCTTGATGATTCTATGAACAGCATGCATGATGCTGCAACGAATTTTAGTACAGAACTGTCTTCTCTTGAAGCTATGATATCTGAAAAGGAGAAGGCTTTGTGTTTGTCAAATGAAGAAAACCGAATGTTAAAAGAAAAAATAGCAGAGTTAGAGCAATGTTTGATCCAAGATAAACAGGAAGATCCAGAAGTCATCAAGCAAGAGAGTACAGAGATCATTTTGCGTGATATAGAGGTGGCGCCTCACATATCACCAAGA]
[+] EMBL CB648508 [GACTTCCGTCACCTGAATGGTATGAGTAAAGAGGAGATCATAACTTATTTTAAGTCCGAAATGAGCAAATTGAAGAGGATGCATGAATTGGATTTGCAGGAGAAGACCGAGGAGCTCTTCAAATTCAAACGGGAGAAGGGATTGCTTACTCTCAAGAATGATGTGGAATTTGAGCCGTTAAGAAAGAAAATTCCACAGATTATTTCTAGAATGGACCAAATCATTTCGAAGAACATAAAGATGCCTTCACTTTGCATGACTAATGATGGACTGGATGAAAGATGCATATCAGCAAAAAGAATCGATTCTTTATATTACGAAAATCAGCATCTTAGAGGTTTGCTTGCAGATAATATGAAGGATGTCAAGGAATTATCATCTCAGCTATCTGAAGCCAGTAAAGAAATGTCTATTCAGTTGTCATCAGAAGACGATCTCCTGAGACAAATTGCCAAAATTAAAGAAGAATATGATGATCTCCAAATCGAAGCCGGTGTTAGGGATGGAGTGTATCAAACTATTACAAGAAAGTTGCTTGATGATTCTATGAACAGCATGCATGATGCTGCAACGAATTTTAGTACAGAACTGTCTTCTCTTGAAGCTATGATATCTGAAAAGGAGAAGGCTTTGTGTTTGTCAAATGAAGAAAACCGAATGTTAAAAGAAAAAATAGCAGAGTTAGAGCAATGTTTGATCCAAGATAAACAGGAAGATCCAGAAGTCATCAAGCAAGAGAGTACAGAGATCATTTTGCGTGATATAGAGGTGGCGCCTCACATATCACCAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_443#0 GCCGTCACCCTCCGCGGCGGCGTGCGCTGCTCCGCTTCACTCCCTTCCATCCATCCCCGG 60
consensus_443#1 ------------------------------------------------------------
consensus_443#0 TCGCCGTCGTCTCCGCCCAGGCCAGCACTGACTTGTCCGTTTTATCCGCCTCCGCTTCTC 120
consensus_443#1 ------------------------------------------------------------
consensus_443#0 TTCCACTGACCCCTTCTTGGCCTTTTTGGGTGTCTCTCATCCATGAGAGTGATTAGTTGG 180
consensus_443#1 ------------------------------------------------------------
consensus_443#0 AGGTTACCAGCTGTAAGTACACCAACAAGCCCTAATAATAGCGAGGCTCGTCAGTTGGGA 240
consensus_443#1 ------------------------------------------------------------
consensus_443#0 GGAGGGAGTGGCGGGAAGGAGGAGGGGAAGTTGCTGGGCCAGCGTTGTGGCGGCGGCGGC 300
consensus_443#1 ------------------------------------------------------------
consensus_443#0 CGGAGTCGTCGGACGCCATGGAGGCCGTCCAGCCGCCGGTGTTGAGTGACAGATTGAACC 360
consensus_443#1 ------------------------------------------------------------
consensus_443#0 CGTTGATCCACCACAGATCAGCTTTTCCAGCCAGTGTTGTGCAGCCTCAAGATCATGGTG 420
consensus_443#1 ------------------------------------------------------------
consensus_443#0 ACAGCGTTCCGGGCTTGTGCAGTGGATCTTTTATTGACACCAGGGGCAGGCTTAGCAGTG 480
consensus_443#1 ------------------------------------------------------------
consensus_443#0 GATCAATGACATCTGAAGATTCACCGGCACTGACGCCGAGATGGTTGTCCATCAAGTCCA 540
consensus_443#1 ------------------------------------------------------------
consensus_443#0 ACTCCAGCTCTGACAACTGCTTTGAAGGATCGAAAAGAGCGGTATCGTGGTCAGACCGGC 600
consensus_443#1 ------------------------------------------------------------
consensus_443#0 ATGTTTTCAATCCAAATGGGCAGGTCAACTATGCAGAATTCATGGATTTGATGGAACAGG 660
consensus_443#1 ------------------------------------------------------------
consensus_443#0 AGCTTGATACCCAACTTGATAGGCTCAAGGGGGATGTAACTGGGCTGGAAAACTTTGCGT 720
consensus_443#1 ------------------------------------------------------------
consensus_443#0 TGCCGGATAATGGGTATATAATTGGTACACACCTGGGCATGTCTCTTGATGTGATGCTGA 780
consensus_443#1 ------------------------------------------------------------
consensus_443#0 TTGAGATTGATGAGAGGTTCAATGCCTTGAAGTTACTGCTGGCCACAGTGTTTCGGAAGG 840
consensus_443#1 ------------------------------------------------------------
consensus_443#0 CTAGGGAGATGGACAGCTCGTCGGTGTCTGATCTGCAGTGGGAGCATGAGTTGCAATTGG 900
consensus_443#1 ------------------------------------------------------------
consensus_443#0 AGGTCATCAACATTACAATAGGAGAATTCATCAGTGGCTTGCAAGAGGAGATGGAGAGGA 960
consensus_443#1 ------------------------------------------------------------
consensus_443#0 AGCTGTATGAGCAAATTTCTATGACAAACTCCATGAGTAAAAATTGGCAGGATGCCATAG 1020
consensus_443#1 ------------------------------------------------------------
consensus_443#0 CTCAATTTGCCAGCATGCGCGATGATCTGGGTGCTCTTTCTAAGCTATTGTTGCCCTCAC 1080
consensus_443#1 ------------------------------------------------------------
consensus_443#0 TACAAGAATCACATATTTCTCACAGCAAGCATGAAACTTCAAGCAACAGGAGCAATAGGT 1140
consensus_443#1 ------------------------------------------------------------
consensus_443#0 GGAAGTACAACATCTTTGGAAAGAAAAACAAGGAGGATCATTCATCTCGCGCGGAGGAAA 1200
consensus_443#1 ------------------------------------------------------------
consensus_443#0 ATAAGAGTTTCAGGAAACAGAAGTCCATGGTTGTCTTGGAAAAATCTGACTTCCGTCACC 1260
consensus_443#1 -----------------------------------------------GACTTCCGTCACC 13
*************
consensus_443#0 TGAATGGTATGAGTAAAGAGGAGATCATAACTTATTTTAAGTCCGAAATGAGCAAATTGA 1320
consensus_443#1 TGAATGGTATGAGTAAAGAGGAGATCATAACTTATTTTAAGTCCGAAATGAGCAAATTGA 73
************************************************************
consensus_443#0 AGAGGATGCATGAATTGGATTTGCAGGAGAAGACCGAGGAGCTCTTCAAATTCAAACGGG 1380
consensus_443#1 AGAGGATGCATGAATTGGATTTGCAGGAGAAGACCGAGGAGCTCTTCAAATTCAAACGGG 133
************************************************************
consensus_443#0 AGAAGGGATTGCTTACTCTCAAGAATGATGTGGAATTTGAGCCGTTAAGAAAGAAAATTC 1440
consensus_443#1 AGAAGGGATTGCTTACTCTCAAGAATGATGTGGAATTTGAGCCGTTAAGAAAGAAAATTC 193
************************************************************
consensus_443#0 CACAGATTATTTCTAGAATGGACCAAATCATTTCGAAGAACATAAAGATGCCTTCACTTT 1500
consensus_443#1 CACAGATTATTTCTAGAATGGACCAAATCATTTCGAAGAACATAAAGATGCCTTCACTTT 253
************************************************************
consensus_443#0 GCATGACTAATGATGGACTGGATGAAAGATGCATATCAGCAAAAAGAATCGATTCTTTAT 1560
consensus_443#1 GCATGACTAATGATGGACTGGATGAAAGATGCATATCAGCAAAAAGAATCGATTCTTTAT 313
************************************************************
consensus_443#0 ATTACGAAAATCAGCATCTTAGAGGTTTGCTTGCAGATAATATGAAGGATGTCAAGGAAT 1620
consensus_443#1 ATTACGAAAATCAGCATCTTAGAGGTTTGCTTGCAGATAATATGAAGGATGTCAAGGAAT 373
************************************************************
consensus_443#0 TATCATCTCAGCTATCTGAAGCCAGTAAAGAAATGTCTATTCAGTTGTCATCAGAAGACG 1680
consensus_443#1 TATCATCTCAGCTATCTGAAGCCAGTAAAGAAATGTCTATTCAGTTGTCATCAGAAGACG 433
************************************************************
consensus_443#0 ATCTCCTGAGACAAATTGCCAAAATTAAAGAGTATGGAGTTTGTTTCAACCTATTGGTAT 1740
consensus_443#1 ATCTCCTGAGACAAATTGCCAAAATTAAAGAAGAATATGATGATCTCCAAATCGAAGCCG 493
******************************* * * * * ** * * *
consensus_443#0 GAATCTGT---------------------------------------------------- 1748
consensus_443#1 GTGTTAGGGATGGAGTGTATCAAACTATTACAAGAAAGTTGCTTGATGATTCTATGAACA 553
* * *
consensus_443#0 ------------------------------------------------------------
consensus_443#1 GCATGCATGATGCTGCAACGAATTTTAGTACAGAACTGTCTTCTCTTGAAGCTATGATAT 613
consensus_443#0 ------------------------------------------------------------
consensus_443#1 CTGAAAAGGAGAAGGCTTTGTGTTTGTCAAATGAAGAAAACCGAATGTTAAAAGAAAAAA 673
consensus_443#0 ------------------------------------------------------------
consensus_443#1 TAGCAGAGTTAGAGCAATGTTTGATCCAAGATAAACAGGAAGATCCAGAAGTCATCAAGC 733
consensus_443#0 -----------------------------------------------------------
consensus_443#1 AAGAGAGTACAGAGATCATTTTGCGTGATATAGAGGTGGCGCCTCACATATCACCAAGA 792
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||