cluster # 4455

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Oryza sativa
cluster # 4455 cluster # 4455 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4455#0 length = 1346 sequences # 2

consensus_4455#1 length = 425 sequences # 1

consensusID : consensus_4455#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1346
fasta sequence

                              [CCGGCATCCCTGCTCCGCCCCACCACCACCACCACCTCGCGCGGCGGCGATGCTTCCGGCGGCGCTGAGGCCTCTCCGCCGCATCCCCCTCGCGCGCCTCCGGAGCCGCCTCCTCTCCTCCTCCGCCTCCGGAGAGGGCGGCCCTCCCGCCGTTGCCTCCACCGACGAAGCGGTGAGGGCGGCGAAGCTGAGGGAGGAGGCGTACAAGCAGGTGGCTAACCTCGACTGGTCCAGCAACGCCGACTTCTGGAAGGCCGTCGATATTGTCAAAACCTTGCCACCCAAGCGCAAGGAATTCGGGCTGGACTTCCACCTGGTGCAACTCTTCTTTGTGTGCCTGCCTTCTCTAGCCGTTTATTTGGTTGCTCAGTATGCACGGAGTGAGATCAAAAGGATGGAGGCAGAAGCAGAAGAGAAAAAGAAAAAGGATGAGGAACTGGAGAAAGAAAAACAGCTTGAAGCAGATTCTGTTAAGGATGAGACTGATTCAAAGCTGTCAGCAGTTTTAGTCCGGTTAGATACACTGGAGGGAGTTGTTAATGAGATTGTGGATGACAAAAGGAAAGGTT-CCGCCCCTGGTTTTTCCAACAAGGAGGAAGCCA-CAAAGAAAGGTG-GAGACAAAGCAATTCCACTGATGGCCAGGT-AGTGCCAGTCAAGAGTAAGGACATCATCAATGGTGCTACAAACGCTTCACCCAATTCTACGCAACAGAGCCCTACAGGGAATGGAGACAAGGCATCTTCTGACCCCAAGGGTTGATGAATCTCGCTGGTTTTTTACGCTTGGAGTGATACTTGGAATGTGCTGTATGCATCAGTTGAGTTTTTTGTTGATCAAGCATGAGCATCGGTTCCATAGAGTAGATGCAGTCATAGGTTCAGTTGCATCGCACCATTTTCCAACAGTGTGGGACTCTCTCCGGGAATGGTTGACTCCCTACGGTAGAGTAGATGCAGTCCATAGAGCCTTGCAGTCTTATGGTCAGTTTTGCAGGAGAAAAGACGCCAATGGTGGATGAACATCAGGGCTCCCTGCTCAACTTTGGGGACTTGAAACCCCAAATTTTGTGTCTAGACATTGTTGATAGCAGTTCTATTCCACCTTACAAAAACTTGGCACATTGAGGCTTGAGGTCTGTTGATGTTGGATGTACTAACTCAGGATTCGGTTTATAAATTACTGAGAAGGGCTAACTTCCAGAAATAATGAAAGGTGCTTGTTCTGGGTACATGTGAATTGTGATACGTGACACTTTCACTTTCCTGAGCTGGTCTATTTGACAAGTGTATCTCCGCTTTGTAAGTAAACACTAACCCATTTGAAGGTTCCAATTTCAAGAATGCAGA]

[+] EMBL AK063626             [CCGGCATCCCTGCTCCGCCCCACCACCACCACCACCTCGCGCGGCGGCGATGCTTCCGGCGGCGCTGAGGCCTCTCCGCCGCATCCCCCTCGCGCGCCTCCGGAGCCGCCTCCTCTCCTCCTCCGCCTCCGGAGAGGGCGGCCCTCCCGCCGTTGCCTCCACCGACGAAGCGGTGAGGGCGGCGAAGCTGAGGGAGGAGGCGTACAAGCAGGTGGCTAACCTCGACTGGTCCAGCAACGCCGACTTCTGGAAGGCCGTCGATATTGTCAAAACCTTGCCACCCAAGCGCAAGGAATTCGGGCTGGACTTCCACCTGGTGCAACTCTTCTTTGTGTGCCTGCCTTCTCTAGCCGTTTATTTGGTTGCTCAGTATGCACGGAGTGAGATCAAAAGGATGGAGGCAGAAGCAGAAGAGAAAAAGAAAAAGGATGAGGAACTGGAGAAAGAAAAACAGCTTGAAGCAGATTCTGTTAAGGATGAGACTGATTCAAAGCTGTCAGCAGTTTTAGTCCGGTTAGATACACTGGAGGGAGTTGTTAATGAGATTGTGGATGACAAAAGGAAAGGTT CCGCCCCTGGTTTTTCCAACAAGGAGGAAGCCA CAAAGAAAGGTG GAGACAAAGCAATTCCACTGATGGCCAGGT AGTGCCAGTCAAGAGTAAGGACATCATCAATGGTGCTACAAACGCTTCACCCAATTCTACGCAACAGAGCCCTACAGGGAATGGAGACAAGGCATCTTCTGACCCCAAGGGTTGATGAATCTCGCTGGTTTTTTACGCTTGGAGTGATACTTGGAATGTGCTGTATGCATCAGTTGAGTTTTTTGTTGATCAAGCATGAGCATCGGTTCCATAGAGTAGATGCAGTCATAGGTTCAGTTGCATCGCACCATTTTCCAACAGTGTGGGACTCTCTCCGGGAATGGTTGACTCCCTACGGTAGAGTAGATGCAGTCCATAGAGCCTTGCAGTCTTATGGTCAGTTTTGCAGGAGAAAAGACGCCAATGGTGGATGAACATCAGGGCTCCCTGCTCAACTTTGGGGACTTGAAACCCCAAATTTTGTGTCTAGACATTGTTGATAGCAGTTCTATTCCACCTTACAAAAACTTGGCACATTGAGGCTTGAGGTCTGTTGATGTTGGATGTACTAACTCAGGATTCGGTTTATAAATTACTGAGAAGGGCTAACTTCCAGAAATAATGAAAGGTGCTTGTTCTGGGTACATGTGAATTGTGATACGTGACACTTTCACTTTCCTGAGCTGGTCTATTTGACAAGTGTATCTCCGCTTTGTAAGTAAACACTAACCCATTTGAAGGTTCCAATTTCAAGAATGCAGA]
[+] EMBL CA753255             [                                            CGGCGATGCTTCCGGCGGCGCTGAGGCCTCTCCGCCGCATCCCCCTCGCGCGCCTCCGGAGCCGCCTCCTCTCCTCCTCCGCCTCCGGAGAGGGCGGCCCTCCCGCCGTTGCCTCCACCGACGAAGCGGTGAGGGCGGCGAAGCTGAGGGAGGAGGCGTACAAGCAGGTGGCTAACCTCGACTGGTCCAGCAACGCCGACTTCTGGAAGGCCGTCGATATTGTCAAAACCTTGCCACCCAAGCGCAAGGAATTCGGGCTGGACTTCCACCTGGTGCAACTCTTCTTTGTGTGCCTGCCTTCTCTAGCCGTTTATTTGGTTGCTCAGTATGCACGGAGTGAGATCAAAAGGATGGAGGCAGAAGCAGAAGAGAAAAAGAAAAAGGATGAGGAACTGGAGAAAGAAAAACAGCTTGAAGCAGATTCTGTTAAGGATGAGACTGATTCAAAGCTGTCAGCAGTTTTAGTCAGGTTAGATACACTGGAGGGAGTNGTNAATGAGATTGTGGATGACAACAGGAAAGGTTCCCGCCCCTGGTTTTTCCAACCAGGAGGAAGCCACCAACAAAATGTGAGAGACAAAGCAATTCCACTGATTGCCAGGTAATTGCC GTCAAGAGTAAGGACATCATCAATTGTGGCACAAACCCTTCACCCAATT TTCGCCACAGAcc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]




>consensus_4455#0
CCGGCATCCCTGCTCCGCCCCACCACCACCACCACCTCGCGCGGCGGCGATGCTTCCGGC
GGCGCTGAGGCCTCTCCGCCGCATCCCCCTCGCGCGCCTCCGGAGCCGCCTCCTCTCCTC
CTCCGCCTCCGGAGAGGGCGGCCCTCCCGCCGTTGCCTCCACCGACGAAGCGGTGAGGGC
GGCGAAGCTGAGGGAGGAGGCGTACAAGCAGGTGGCTAACCTCGACTGGTCCAGCAACGC
CGACTTCTGGAAGGCCGTCGATATTGTCAAAACCTTGCCACCCAAGCGCAAGGAATTCGG
GCTGGACTTCCACCTGGTGCAACTCTTCTTTGTGTGCCTGCCTTCTCTAGCCGTTTATTT
GGTTGCTCAGTATGCACGGAGTGAGATCAAAAGGATGGAGGCAGAAGCAGAAGAGAAAAA
GAAAAAGGATGAGGAACTGGAGAAAGAAAAACAGCTTGAAGCAGATTCTGTTAAGGATGA
GACTGATTCAAAGCTGTCAGCAGTTTTAGTCCGGTTAGATACACTGGAGGGAGTTGTTAA
TGAGATTGTGGATGACAAAAGGAAAGGTTCCGCCCCTGGTTTTTCCAACAAGGAGGAAGC
CACAAAGAAAGGTGGAGACAAAGCAATTCCACTGATGGCCAGGTAGTGCCAGTCAAGAGT
AAGGACATCATCAATGGTGCTACAAACGCTTCACCCAATTCTACGCAACAGAGCCCTACA
GGGAATGGAGACAAGGCATCTTCTGACCCCAAGGGTTGATGAATCTCGCTGGTTTTTTAC
GCTTGGAGTGATACTTGGAATGTGCTGTATGCATCAGTTGAGTTTTTTGTTGATCAAGCA
TGAGCATCGGTTCCATAGAGTAGATGCAGTCATAGGTTCAGTTGCATCGCACCATTTTCC
AACAGTGTGGGACTCTCTCCGGGAATGGTTGACTCCCTACGGTAGAGTAGATGCAGTCCA
TAGAGCCTTGCAGTCTTATGGTCAGTTTTGCAGGAGAAAAGACGCCAATGGTGGATGAAC
ATCAGGGCTCCCTGCTCAACTTTGGGGACTTGAAACCCCAAATTTTGTGTCTAGACATTG
TTGATAGCAGTTCTATTCCACCTTACAAAAACTTGGCACATTGAGGCTTGAGGTCTGTTG
ATGTTGGATGTACTAACTCAGGATTCGGTTTATAAATTACTGAGAAGGGCTAACTTCCAG
AAATAATGAAAGGTGCTTGTTCTGGGTACATGTGAATTGTGATACGTGACACTTTCACTT
TCCTGAGCTGGTCTATTTGACAAGTGTATCTCCGCTTTGTAAGTAAACACTAACCCATTT
GAAGGTTCCAATTTCAAGAATGCAGA

consensusID : consensus_4455#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 425
fasta sequence

                              [TCCGGAGCCGCCTCCTCTCCTCCTCCGCCTCCGGAGAGGGCGGCCCTCCCGCCGTTGTCTCCACCGACGAAGCGGTGAGGTACGGCGAAGTGAGGGAGGAGGCGTACAAGCAGGTGGCTAACCTCGACTGGTCCAGCAACGNCGNCTTCTGGAAGGCCGTCGATATTGTCAAAACCTTNGCCACCCAAGCGCAAGGAATTNGGGCTGGACTTACACCTGGTGCAACTCTTCTTTGTGTGCCTNCCTTCTCTAGCCGTTTATTTTAGTTGCTCAAGTATGCACGGAGNTTGATTCAAAAGAATGAGAGGCAGAAGCAGATAGAGAAAAAGAAAAAGGATGNAGGNACTAGAGAAAAGTAAAACNAAATTGATGCAGATTCTNATTAGGNNTTAANNCTTATTTTAAAAGAGTANTAAGCAGNTTTA]

[+] EMBL D42774               [TCCGGAGCCGCCTCCTCTCCTCCTCCGCCTCCGGAGAGGGCGGCCCTCCCGCCGTTGTCTCCACCGACGAAGCGGTGAGGTACGGCGAAGTGAGGGAGGAGGCGTACAAGCAGGTGGCTAACCTCGACTGGTCCAGCAACGNCGNCTTCTGGAAGGCCGTCGATATTGTCAAAACCTTNGCCACCCAAGCGCAAGGAATTNGGGCTGGACTTACACCTGGTGCAACTCTTCTTTGTGTGCCTNCCTTCTCTAGCCGTTTATTTTAGTTGCTCAAGTATGCACGGAGNTTGATTCAAAAGAATGAGAGGCAGAAGCAGATAGAGAAAAAGAAAAAGGATGNAGGNACTAGAGAAAAGTAAAACNAAATTGATGCAGATTCTNATTAGGNNTTAANNCTTATTTTAAAAGAGTANTAAGCAGNTTTA]




>consensus_4455#1
TCCGGAGCCGCCTCCTCTCCTCCTCCGCCTCCGGAGAGGGCGGCCCTCCCGCCGTTGTCT
CCACCGACGAAGCGGTGAGGTACGGCGAAGTGAGGGAGGAGGCGTACAAGCAGGTGGCTA
ACCTCGACTGGTCCAGCAACGNCGNCTTCTGGAAGGCCGTCGATATTGTCAAAACCTTNG
CCACCCAAGCGCAAGGAATTNGGGCTGGACTTACACCTGGTGCAACTCTTCTTTGTGTGC
CTNCCTTCTCTAGCCGTTTATTTTAGTTGCTCAAGTATGCACGGAGNTTGATTCAAAAGA
ATGAGAGGCAGAAGCAGATAGAGAAAAAGAAAAAGGATGNAGGNACTAGAGAAAAGTAAA
ACNAAATTGATGCAGATTCTNATTAGGNNTTAANNCTTATTTTAAAAGAGTANTAAGCAG
NTTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4455#0      CCGGCATCCCTGCTCCGCCCCACCACCACCACCACCTCGCGCGGCGGCGATGCTTCCGGC 60
consensus_4455#1      ------------------------------------------------------------
                                                                                  

consensus_4455#0      GGCGCTGAGGCCTCTCCGCCGCATCCCCCTCGCGCGCCTCCGGAGCCGCCTCCTCTCCTC 120
consensus_4455#1      --------------------------------------TCCGGAGCCGCCTCCTCTCCTC 22
                                                            **********************

consensus_4455#0      CTCCGCCTCCGGAGAGGGCGGCCCTCCCGCCGTTGCCTCCACCGACGAAGCGGTGAGG-G 179
consensus_4455#1      CTCCGCCTCCGGAGAGGGCGGCCCTCCCGCCGTTGTCTCCACCGACGAAGCGGTGAGGTA 82
                      *********************************** **********************  

consensus_4455#0      CGGCGAAGCTGAGGGAGGAGGCGTACAAGCAGGTGGCTAACCTCGACTGGTCCAGCAACG 239
consensus_4455#1      CGGCGAAG-TGAGGGAGGAGGCGTACAAGCAGGTGGCTAACCTCGACTGGTCCAGCAACG 141
                      ******** ***************************************************

consensus_4455#0      CCGACTTCTGGAAGGCCGTCGATATTGTCAAAACCTTG-CCACCCAAGCGCAAGGAATTC 298
consensus_4455#1      NCGNCTTCTGGAAGGCCGTCGATATTGTCAAAACCTTNGCCACCCAAGCGCAAGGAATTN 201
                       ** *********************************  ******************** 

consensus_4455#0      GGGCTGGACTTCCACCTGGTGCAACTCTTCTTTGTGTGCCTGCCTTCTCTAGCCGTTTAT 358
consensus_4455#1      GGGCTGGACTTACACCTGGTGCAACTCTTCTTTGTGTGCCTNCCTTCTCTAGCCGTTTAT 261
                      *********** ***************************** ******************

consensus_4455#0      TT-GGTTGCTCA-GTATGCACGGAGTGAGAT-CAAAAGGATG-GAGGCAGAAGCAGA-AG 413
consensus_4455#1      TTTAGTTGCTCAAGTATGCACGGAGNTTGATTCAAAAGAATGAGAGGCAGAAGCAGATAG 321
                      **  ******** ************   *** ****** *** ************** **

consensus_4455#0      AGAAAAAGAAAAAGGATGA-GGAACTGGAGAAAG--AAAAACAGCTTGAAGCAGATTCTG 470
consensus_4455#1      AGAAAAAGAAAAAGGATGNAGGNACTAGAGAAAAGTAAAACNAAATTGATGCAGATTCTN 381
                      ******************  ** *** ******   ****  *  **** ********* 

consensus_4455#0      TTAAGGAT--GAGACTGATTC----AAAGCTGTCAGCAGTTTTAGTCCGGTTAGATACAC 524
consensus_4455#1      ATTAGGNNTTAANNCTTATTTTAAAAGAGTANTAAGCAGNTTTA---------------- 425
                       * ***     *  ** ***     * **   * ***** ****                

consensus_4455#0      TGGAGGGAGTTGTTAATGAGATTGTGGATGACAAAAGGAAAGGTTCCGCCCCTGGTTTTT 584
consensus_4455#1      ------------------------------------------------------------
                                                                                  

consensus_4455#0      CCAACAAGGAGGAAGCCACAAAGAAAGGTGGAGACAAAGCAATTCCACTGATGGCCAGGT 644
consensus_4455#1      ------------------------------------------------------------
                                                                                  

consensus_4455#0      AGTGCCAGTCAAGAGTAAGGACATCATCAATGGTGCTACAAACGCTTCACCCAATTCTAC 704
consensus_4455#1      ------------------------------------------------------------
                                                                                  

consensus_4455#0      GCAACAGAGCCCTACAGGGAATGGAGACAAGGCATCTTCTGACCCCAAGGGTTGATGAAT 764
consensus_4455#1      ------------------------------------------------------------
                                                                                  

consensus_4455#0      CTCGCTGGTTTTTTACGCTTGGAGTGATACTTGGAATGTGCTGTATGCATCAGTTGAGTT 824
consensus_4455#1      ------------------------------------------------------------
                                                                                  

consensus_4455#0      TTTTGTTGATCAAGCATGAGCATCGGTTCCATAGAGTAGATGCAGTCATAGGTTCAGTTG 884
consensus_4455#1      ------------------------------------------------------------
                                                                                  

consensus_4455#0      CATCGCACCATTTTCCAACAGTGTGGGACTCTCTCCGGGAATGGTTGACTCCCTACGGTA 944
consensus_4455#1      ------------------------------------------------------------
                                                                                  

consensus_4455#0      GAGTAGATGCAGTCCATAGAGCCTTGCAGTCTTATGGTCAGTTTTGCAGGAGAAAAGACG 1004
consensus_4455#1      ------------------------------------------------------------
                                                                                  

consensus_4455#0      CCAATGGTGGATGAACATCAGGGCTCCCTGCTCAACTTTGGGGACTTGAAACCCCAAATT 1064
consensus_4455#1      ------------------------------------------------------------
                                                                                  

consensus_4455#0      TTGTGTCTAGACATTGTTGATAGCAGTTCTATTCCACCTTACAAAAACTTGGCACATTGA 1124
consensus_4455#1      ------------------------------------------------------------
                                                                                  

consensus_4455#0      GGCTTGAGGTCTGTTGATGTTGGATGTACTAACTCAGGATTCGGTTTATAAATTACTGAG 1184
consensus_4455#1      ------------------------------------------------------------
                                                                                  

consensus_4455#0      AAGGGCTAACTTCCAGAAATAATGAAAGGTGCTTGTTCTGGGTACATGTGAATTGTGATA 1244
consensus_4455#1      ------------------------------------------------------------
                                                                                  

consensus_4455#0      CGTGACACTTTCACTTTCCTGAGCTGGTCTATTTGACAAGTGTATCTCCGCTTTGTAAGT 1304
consensus_4455#1      ------------------------------------------------------------
                                                                                  

consensus_4455#0      AAACACTAACCCATTTGAAGGTTCCAATTTCAAGAATGCAGA 1346
consensus_4455#1      ------------------------------------------