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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4469#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 783 fasta sequence
[CGGCCTCCCTCGGCGGCGGCGCTGGAGGAATCGCATTGGAAAAGTGCGGCGTGATCGCGTGCACGCCGACTAGAAGAAAGGAGATAGGCTACACACGCACGAGGGGCGCGCACTCACCGGGCAGAGCAACCCAATCCTTATGAAGAACGGGAGCAACGTGCTCAGGGCAAAGAGAGCCGTTTTCTACTGGTTCGCGAACCCTCCCCTCCCTCTTTGTTACTATTAATTATAGTTCTCTTTCTGCACAAATCGATAAAGGTTAAAGGATATGGTGTTGGTCACTTGTTAATTTTGGCAATCTCTACAGTCTAAACCACATAGTTTGCATAATAACAAGATAAAGTGGCTTTTCAGCCATGCATCAAGCTGGGTGCTGTAGTAGTCAGGGTTAGCAATCTCAACATTGTGATTTTTGCCGGGGGTGGCCAAAAGAACCAAAATCTCTGAAATTTCGGTACTTTTTTGGCCCCCTTTTTTTTTGAAAATTTGACGAATTTCGAATGAATTTGAATTTTTTTTTGACCAGTTTCAAAAAAAATGGAAAAAAAACCCGAAAATTTCGGGCGAAATATGTGCTTGCTGGCGGGGGATGAAATTTCATTCTGAAATTGCATTCACTGGTAGTATTTGATTATGTAGGGCAAAATGTAATTTTGGTTTGGTCCAAGCACACATCTGGATATTCCAACAAACAATTTGTACTTGTCTTACCTACTAATCTACCATTTCTTCAGTGTAGCAGTGTGCTATTGTAATCATGTTGGCCCAAACAGACAAATGCGA]
[+] EMBL CB647314 [CGGCCTCCCTCGGCGGCGGCGCTGGAGGAATCGCATTGGAAAAGTGCGGCGTGATCGCGTGCACGCCGACTAGAAGAAAGGAGATAGGCTACACACGCACGAGGGGCGCGCACTCACCGGGCAGAGCAACCCAATCCTTATGAAGAACGGGAGCAACGTGCTCAGGGCAAAGAGAGCCGTTTTCTACTGGTTCGCGAACCCTCCCCTCCCTCTTTGTTACTATTAATTATAGTTCTCTTTCTGCACAAATCGATAAAGGTTAAAGGATATGGTGTTGGTCACTTGTTAATTTTGGCAATCTCTACAGTCTAAACCACATAGTTTGCATAATAACAAGATAAAGTGGCTTTTCAGCCATGCATCAAGCTGGGTGCTGTAGTAGTCAGGGTTAGCAATCTCAACATTGTGATTTTTGCCGGGGGTGGCCAAAAGAACCAAAATCTCTGAAATTTCGGTACTTTTTTGGCCCCCTTTTTTTTTGAAAATTTGACGAATTTCGAATGAATTTGAATTTTTTTTTGACCAGTTTCAAAAAAAATGGAAAAAAAACCCGAAAATTTCGGGCGAAATATGTGCTTGCTGGCGGGGGATGAAATTTCATTCTGAAATTGCATTCACTGGTAGTATTTGATTATGTAGGGCAAAATGTAATTTTGGTTTGGTCCAAGCACACATCTGGATATTCCAACAAACAATTTGTACTTGTCTTACCTACTAATCTACCATTTCTTCAGTGTAGCAGTGTGCTATTGTAATCATGTTGGCCCAAACAGACAAATGCGA]
consensusID : consensus_4469#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence
[GTTTTGGTTGGTCAATCAGCACTGGTCGAGAAGCGAGCACACAGGCCGGACGCTCTGATGGATCGTGTTTTTGCTTGTTTATTTGCAGTTGGAAAAGTGCGGCGTGATCGCGTGCACGCCGACTAGAAGAAAGGAGATAGGCTACACACGCACGAGGGGCGCGCACTCACCGGGCAGAGCAACCCAATCCTTATGAAGAACGGGAGCAACGTGCTCAGGGCAAAGAGAGCCGTTTTCTACTGTATTTTGCAGATGCAGTTTGCAGCAGCTGTAGCTGCCCCAGTGGGCGAGCTACCAACTGCACGCTCGCCGATTCAACTTCAGTTGACCAATGCTTGGTCGGTTTGCAGACACGCTCAAGTGCCCAACTGGTTTGCCGATCACCAGTTCAAAGGCTGCTGCGATATTCTGAAATTTATTTATGAACATGGTGACTACTGAAAAGCCACTTGCAATCTGCATTGCTGAATCTCTGTCTTTCTTGCTGTGGAACACTTGTCAAACAATGCGCAAGTCATCTGGATGCGTTTGAAGAAGAAGAATACGTCGATAAAGCTAAACTGAAGCGGCGTGTTGGTTATGGTGTATGGATGGGGGGTTTGACTTTGTGCGGAGTATGTAAAAGCGACCTCTGCTCAATGTCAAATAATCGGTGGAAGTGNT]
[+] EMBL CA764304 [GTTTTGGTTGGTCAATCAGCACTGGTCGAGAAGCGAGCACACAGGCCGGACGCTCTGATGGATCGTGTTTTTGCTTGTTTATTTGCAGTTGGAAAAGTGCGGCGTGATCGCGTGCACGCCGACTAGAAGAAAGGAGATAGGCTACACACGCACGAGGGGCGCGCACTCACCGGGCAGAGCAACCCAATCCTTATGAAGAACGGGAGCAACGTGCTCAGGGCAAAGAGAGCCGTTTTCTACTGTATTTTGCAGATGCAGTTTGCAGCAGCTGTAGCTGCCCCAGTGGGCGAGCTACCAACTGCACGCTCGCCGATTCAACTTCAGTTGACCAATGCTTGGTCGGTTTGCAGACACGCTCAAGTGCCCAACTGGTTTGCCGATCACCAGTTCAAAGGCTGCTGCGATATTCTGAAATTTATTTATGAACATGGTGACTACTGAAAAGCCACTTGCAATCTGCATTGCTGAATCTCTGTCTTTCTTGCTGTGGAACACTTGTCAAACAATGCGCAAGTCATCTGGATGCGTTTGAAGAAGAAGAATACGTCGATAAAGCTAAACTGAAGCGGCGTGTTGGTTATGGTGTATGGATGGGGGGTTTGACTTTGTGCGGAGTATGTAAAAGCGACCTCTGCTCAATGTCAAATAATCGGTGGAAGTGNT]
consensusID : consensus_4469#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence
[GACCTATTCTTCTTCTTCAAACGCATCCAAATGACTTGCGCATTGTTTGACAAGTGTTCCCCAGCAAGAAAGACAGAGATTCACCAATGCAAATTGCAAGTGGCTTTTCAGGAGTCACCATGTTCATAAATAAATTTCAAAATATCGCAGCAGCCTTTGAACTGGTGATCGGCAAACCAGTTGGGCACTTGAGCGTGTCTGCAAACCGACCAAGCATTGGTCAACTGAAGTTGAATCGGCGAGCGTGCAGTTGGTAGCTCCCCCACTGGGGCAGCTACAGCTGCTGCAAACTGCATCTGCAAAATACTCCTAAAACAGGTAAGCTGCCCACAGGTGAGCATTGCAGGGGGGAGCAGGCTAATCTGGATAATGCAAATGTCAACGGAGACTGGTATGAAACAATTGAATTAACACAACTGCATCTATAAAATGAGATCTATCTTGGACCTAACAACAGCAAGATCGGCAGAAGATCTCCAAGCTACTAGTAGCATGGACTCTTTGCGTGTGTTGATAACTGATAAAGTGTAGAGTTCCAGAAGTTGACTAACTTCAAACAAATTTCTTTCCATAACATGACAAATATTACTTGGCCCATGGACCCCTGGAAAGCCGGTGCGTGGTAAACG]
[+] EMBL CB647315 [GACCTATTCTTCTTCTTCAAACGCATCCAAATGACTTGCGCATTGTTTGACAAGTGTTCCCCAGCAAGAAAGACAGAGATTCACCAATGCAAATTGCAAGTGGCTTTTCAGGAGTCACCATGTTCATAAATAAATTTCAAAATATCGCAGCAGCCTTTGAACTGGTGATCGGCAAACCAGTTGGGCACTTGAGCGTGTCTGCAAACCGACCAAGCATTGGTCAACTGAAGTTGAATCGGCGAGCGTGCAGTTGGTAGCTCCCCCACTGGGGCAGCTACAGCTGCTGCAAACTGCATCTGCAAAATACTCCTAAAACAGGTAAGCTGCCCACAGGTGAGCATTGCAGGGGGGAGCAGGCTAATCTGGATAATGCAAATGTCAACGGAGACTGGTATGAAACAATTGAATTAACACAACTGCATCTATAAAATGAGATCTATCTTGGACCTAACAACAGCAAGATCGGCAGAAGATCTCCAAGCTACTAGTAGCATGGACTCTTTGCGTGTGTTGATAACTGATAAAGTGTAGAGTTCCAGAAGTTGACTAACTTCAAACAAATTTCTTTCCATAACATGACAAATATTACTTGGCCCATGGACCCCTGGAAAGCCGGTGCGTGGTAAACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4469#0 ----------------------------------------------CGGCCTCCCTCGGC 14
consensus_4469#1 GTTTTGGTTGGTCAATCAGCACTGGTCGAGAAGCGAGCACACAGGCCGGACGCTCTGATG 60
consensus_4469#2 ------------------------------------------GACCTATTCTTCTTCTTC 18
* *
consensus_4469#0 GGCGGCG------CTGGAGGAATCGCA-TTGGAAAAGTGCGGCGTGATCGCGTGCACGCC 67
consensus_4469#1 GATCGTGTTTTTGCTTGTTTATTTGCAGTTGGAAAAGTGCGGCGTGATCGCGTGCACGCC 120
consensus_4469#2 AAACGCAT-----CCAAATGACTTGC----------GCATTGTTTGA-CAAGTGTTCCCC 62
* * * * ** * * *** * *** * **
consensus_4469#0 GACTAGAAGAAAGGAGATAGGCTA-CACACGC-ACGAGGGGCGC----GCACTCACCGGG 121
consensus_4469#1 GACTAGAAGAAAGGAGATAGGCTA-CACACGC-ACGAGGGGCGC----GCACTCACCGGG 174
consensus_4469#2 AGCAAGAAAGACAGAGATTCACCAATGCAAATTGCAAGTGGCTTTTCAGGAGTCACCATG 122
* **** * ***** * * ** * ** *** * * ***** *
consensus_4469#0 CAGAGCAACCCAATCCTTATGAAGAACGGGAGCAAC-GTGCTCAGGGCAAAGAGAGCCGT 180
consensus_4469#1 CAGAGCAACCCAATCCTTATGAAGAACGGGAGCAAC-GTGCTCAGGGCAAAGAGAGCCGT 233
consensus_4469#2 TTCA-TAAATAAATTTCAAAATATCGCAGCAGCCTTTGAACTGGTGATCGGCAAACCAGT 181
* ** *** * * * * *** * ** * * * * **
consensus_4469#0 TTTCTACTGGTTCGCGAACCCTCCCCTCCCTCTTTGTTACTATTAATTATAGTTCTCTTT 240
consensus_4469#1 TTTCTACTGTATTTTGCAGATGCA-----------GTTTGCAGCAGCTGTAGCTGCCCCA 282
consensus_4469#2 TGGGCACTTGAGCGTGTCTGCAAACCGACCAA---GCATTGGTCAACTGAAGTTGAATCG 238
* *** * * * * ** *
consensus_4469#0 CTGCACAAATCGATAAAGGTTAAAGGATATGGTGTTGGTCACTTGTTAATTTTGGCAATC 300
consensus_4469#1 GTGGGCGAGCTACCAACTGC-----------ACGCTCGCCGATT--CAACTTCAGTTGAC 329
consensus_4469#2 GCGAGCGTGCAGTTGGTAGCT-----------CCCCCACTGGGG--CAGCTACAGCTGCT 285
* * * * * *
consensus_4469#0 TCTACAGTCTAAACCACATAGTTTGCATAATAACAAGATAAAGTGGCTTTTCAGCCATGC 360
consensus_4469#1 CA---ATGCTTGGTCGGTTTGCAGACACGCTCAAGTGCCCAACTGGTTTGCCGATCACCA 386
consensus_4469#2 GC---AAACTGCATCTG-CAAAATACTC-CTAAAACAGGTAAGCTGCCCACAGGTGAGCA 340
* ** * * * * ** * *
consensus_4469#0 ATCAAGCTGGGTGCTGTAGTAGTCAGGGTTAGCAATCTCAACATTGTGATTTTTGCCGGG 420
consensus_4469#1 GTTCAAA-GGCTGCTGCGATATTCTGAAATTTATTTATGAACATGGTGACTACTG--AAA 443
consensus_4469#2 TTGCAGGGGGGAGCAG-GCTAATCTGGATAATGCAAATGTCAACGGAGACTGGTATGAAA 399
* * ** ** * ** ** * * * * ** * *
consensus_4469#0 --GGTGGCCAAAAGAACCAAAATCTCTGAAATTTCGGTACTTTTTTGGCCCCCTTTTTTT 478
consensus_4469#1 --AGCCACTTGCA--ATCTGCATTGCTGAA-TCTCTGT-CTTTCTTG----------CTG 487
consensus_4469#2 CAATTGAATTAACACAACTGCATCTATAAA--ATGAGATCTATCTTGGACC---TAACAA 454
* * ** * ** * * ** * ***
consensus_4469#0 TTGAAAATTTGACGAATTTCGAATGAATTTGAATTTTTTTTTGACCAGTTTCAAAAAAAA 538
consensus_4469#1 TGGAACACTTGTCAAACAATGCGCAAGTC---ATCTGGATGCGTTTGAAGAAGAAGAATA 544
consensus_4469#2 CAGCAAGATCGGCAGAAGATCTCCAAGCT---ACTAGTA---GCATGGACTCTTTGCGTG 508
* * * * * * * * *
consensus_4469#0 TGGAAAAAAAACCCGA---AAATTTCGGGCGAAATATGTGCTTGCTGGCGGGGGATGAAA 595
consensus_4469#1 CGTCGATAAAGCTAAACTGAAGCGGCGTGTTGGTTATG-GTGTATGGATGGGGGGTTTGA 603
consensus_4469#2 TGTTGATAA---CTGA-TAAAGTGTAGAGTT--CCAGAAGTTGACTAACTTCAAACAAAT 562
* * ** * ** * * * *
consensus_4469#0 TTTCATTCTGAAATTGCATTCACTGGTAGTATTTGATTA-TGTAGGGCAAAATGTAATTT 654
consensus_4469#1 CTTTGTGCGGA----GTATGTAAAAGCGACCTCTGCTCAATGTCAAATAATCGGTGGAAG 659
consensus_4469#2 TTCTTTCCATA----ACATG-ACAAATATTACTTGGCC--CATGGACC--CCTGGAAAGC 613
* * * * ** * ** * *
consensus_4469#0 TGGTTTGGTCCAAGCACACATCTGGATATTCCAACAAACAATTTGTACTTGTCTTACCTA 714
consensus_4469#1 TGNT-------------------------------------------------------- 663
consensus_4469#2 CGGTGCGTGGTAAACG-------------------------------------------- 629
* *
consensus_4469#0 CTAATCTACCATTTCTTCAGTGTAGCAGTGTGCTATTGTAATCATGTTGGCCCAAACAGA 774
consensus_4469#1 ------------------------------------------------------------
consensus_4469#2 ------------------------------------------------------------
consensus_4469#0 CAAATGCGA 783
consensus_4469#1 ---------
consensus_4469#2 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||