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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4483#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 757 fasta sequence
[TTTTTTAGTAGTATAACATAAACTTATTATTACATATAAACGATACATATATAATCAAAAGGCACCACTGGTTCAACGAACCACTTACACTTATATCTCTACGGGTTTCTAACCAGAAAGCACACTAGTTGCTGTTGTTATTTTTCATAGTTGCACACTAGTTGGCTATAATAATAATAATAAATATAGTTGCTGTTTTTTTACATAGTTGCAGACTAGTTGGCTATAATAGTAATATAGCCAACACGCCCCTATAATAATAATATACCGAGCTAACACTGCCTGCTTCTTTTGCCACAAAACTTGTTCGAGACTTCCT-CCACAGTGAGATCCGCAAATTTGTTTGTACCTAGTGTGCATTTGCAGCAACCATATTTTTTCACCTGTTCAGCATTGAACTTTTCGACATACTGGACAGTAGACTTGAATACCTCAAAGCGATAAGCCTTCTCTGCCTCGTCTTTGTAATTACGGTTGAACTTGTTCATCCACTCTTGGAATCTCACCTTCAGGGCCTGCTCCTCGTCTTCAGACACCTTCTTGGAGCCCTCCATCCTCTCATCACTGTCGCTTGTCTTCAGATACTTGAAAGCTTCTGGTTCCCCTGCAGTGTTTGTGGTTGCCATAGACACTTCCATTGTGTTACCAGGCCTTAATAATTTGAGTTCACGTTCCCCTGAAGGCACCCTTAGAAAAGAGCCCTGCAGCCTTGTGGTTCTTCCTGCGTTGTAAGCACGGCCAGGAGGAGAAGACTTGC]
[+] EMBL CF278034 [TTTTTTAGTAGTATAACATAAACTTATTATTACATATAAACGATACATATATAATCAAAAGGCACCACTGGTTCAACGAACCACTTACACTTATATCTCTACGGGTTTCTAACCAGAAAGCACACTAGTTGCTGTTGTTATTTTTCATAGTTGCACACTAGTTGGCTATAATAATAATAATAAATATAGTTGCTGTTTTTTTACATAGTTGCAGACTAGTTGGCTATAATAGTAATATAGCCAACACGCCCCTATAATAATAATATACCGAGCTAACACTGCCTGCTTCTTTTGCCACAAAACTTGTTCGAGACTTCCT CCACAGTGAGATCCGCAAATTTGTTTGTACCTAGTGTGCATTTGCAGCAACCATATTTTTTCACCTGTTCAGCATTGAACTTTTCGACATACTGGACAGTAGACTTGAATACCTCAAAGCGATAAGCCTTCTCTGCCTCGTCT ]
[-] EMBL CF278033 [ AACCAGAAAGCACACTAGTTGCTGTTGTTATTTTTCATAGTTGCACACTAGTTGGCTATAATAATAATAATAAATATAGTTGCTGTTTTTTTACATAGTTGCAGACTAGTTGGCTATAATAGTAATATAGCCAACACGCCCCTATAATAATAATATACCGAGCTAACACTGCCTGCTTCTTTTGCCACAAAACTTGTTCGAGACTTCCTNCCACAGTGAGATCCGCAAATTTGTTTGTACCTAGTGTGCATTTGCAGCAACCATATTTTTTCACCTGTTCAGCATTGAACTTTTCGACATACTGGACAGTAGACTTGAATACCTCAAAGCGATAAGCCTTCTCTGCCTCGTCTTTGTAATTACGGTTGAACTTGTTCATCCACTCTTGGAATCTCACCTTCAGGGCCTGCTCCTCGTCTTCAGACACCTTCTTGGAGCCCTCCATCCTCTCATCACTGTCGCTTGTCTTCAGATACTTGAAAGCTTCTGGTTCCCCTGCAGTGTTTGTGGTTGCCATAGACACTTCCATTGTGTTACCAGGCCTTAATAATTTGAGTTCACGTTCCCCTGAAGGCACCCTTAGAAAAGAGCCCTGCAGCCTTGTGGTTCTTCCTGCGTTGTAAGCACGGCCAGGAGGAGAAGACTTGC]
consensusID : consensus_4483#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence
[TCAAATGGCNCCNATTTAATAATACTAATACATATGTGTTTAATCAAATTTAGTGACCTTAGNCGGGCCAAAAGTGTCCGTACGACCATCAACCCAGTGTCCGAATTCCTCTAGAGTGAGATCTGCGAATTGGGTGGTACCTAGTATGCATTTGCAATACCCATGCTCTTTCACTTGTTCAGCATTGAACTTCTCAGCAAATCGGACAGTAGACTTGAATATCTCAAAGCGATAAGCCTTCTCTGCCTCGTCTTTGTATTCGCGGTTGAACTTGTTCATCCACTCTTGGTGTCTCACCTTCAGGGCCGCCTCCTCCTCCTCAGTCAGATTCATCCTCTCATCGTCATCGCTTGTCTTCATGAGCTTAGGTAGTGGTTGTGGTTCTTCTGCAATGTTTGTGGCATACCGCTGATATCCAAGCAATGCAGGTCCTATAGACACTGCTGCCATGGTGTTGTTACGAGGCCTTAATAATAATTTGAGTTCAAGTCCCCCTGACAGCACCCTGAGAGAGGAGCCCTGGAGCCTCGTGGTATTGGATCTTCCGACATGGTGAGCAAGGCCATGAAGAAGATGACTTGCTGCTGCTCCTCTCCTCATGGCGAACAATCCCTAGGTTGGCTAGATGAATCGACCAAACAACAAATTAAGCGATCAGGCGATCTCTGGTTATCTCGATCGGCGCAGGGCGGCTAGGGCACGCGGCGCCCGACGTTGGGTGAT]
[-] EMBL CA764356 [TCAAATGGCNCCNATTTAATAATACTAATACATATGTGTTTAATCAAATTTAGTGACCTTAGNCGGGCCAAAAGTGTCCGTACGACCATCAACCCAGTGTCCGAATTCCTCTAGAGTGAGATCTGCGAATTGGGTGGTACCTAGTATGCATTTGCAATACCCATGCTCTTTCACTTGTTCAGCATTGAACTTCTCAGCAAATCGGACAGTAGACTTGAATATCTCAAAGCGATAAGCCTTCTCTGCCTCGTCTTTGTATTCGCGGTTGAACTTGTTCATCCACTCTTGGTGTCTCACCTTCAGGGCCGCCTCCTCCTCCTCAGTCAGATTCATCCTCTCATCGTCATCGCTTGTCTTCATGAGCTTAGGTAGTGGTTGTGGTTCTTCTGCAATGTTTGTGGCATACCGCTGATATCCAAGCAATGCAGGTCCTATAGACACTGCTGCCATGGTGTTGTTACGAGGCCTTAATAATAATTTGAGTTCAAGTCCCCCTGACAGCACCCTGAGAGAGGAGCCCTGGAGCCTCGTGGTATTGGATCTTCCGACATGGTGAGCAAGGCCATGAAGAAGATGACTTGCTGCTGCTCCTCTCCTCATGGCGAACAATCCCTAGGTTGGCTAGATGAATCGACCAAACAACAAATTAAGCGATCAGGCGATCTCTGGTTATCTCGATCGGCGCAGGGCGGCTAGGGCACGCGGCGCCCGACGTTGGGTGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4483#0 TTTTTTAGTAGTATAACATAAACTTATTATTACATATAAACGATACATATATAATCAAAA 60
consensus_4483#1 ------------------------------------------------------------
consensus_4483#0 GGCACCACTGGTTCAACGAACCACTTACACTTATATCTCTACGGGTTTCTAACCAGAAAG 120
consensus_4483#1 ------------------------------------------------------------
consensus_4483#0 CACACTAGTTGCTGTTGTTATTTTTCATAGTTGCACACTAGTTGGCTATAATAATAATAA 180
consensus_4483#1 ------------------------------------------------------------
consensus_4483#0 TAAATATAGTTGCTGTTTTTTTACATAGTTGCAGACTAGTTGGCTATAATAGTAATATAG 240
consensus_4483#1 --------------------TCAAATGGCNCCNATTTAAT-AATACTAATACATATGTGT 39
* * ** * * ** * ***** ** *
consensus_4483#0 CCAACACGCCCCTATAATAATAATATACCGAGCTAACACTGCCTGCTTCTTTTGCCACAA 300
consensus_4483#1 TTAAT---CAAATTTAGTGACCTTA-GNCGGGCCAAAAGTGTCCG----TACGACCATCA 91
** * * ** * * ** ** ** ** * ** * * * *** *
consensus_4483#0 AACTTGTTCGAGACTTCCTCCACAGTGAGATCCGCAAATTTGTTTGTACCTAGTGTGCAT 360
consensus_4483#1 ACCCAGTGTCCGAATTCCTCTAGAGTGAGATCTGCGAATTGGGTGGTACCTAGTATGCAT 151
* * ** ** ****** * ********* ** **** * * ********* *****
consensus_4483#0 TTGCAGCAACCATATTTTTTCACCTGTTCAGCATTGAACTTTTCGACATACTGGACAGTA 420
consensus_4483#1 TTGCAATACCCATGCTCTTTCACTTGTTCAGCATTGAACTTCTCAGCAAATCGGACAGTA 211
***** * **** * ****** ***************** ** ** * ********
consensus_4483#0 GACTTGAATACCTCAAAGCGATAAGCCTTCTCTGCCTCGTCTTTGTAATTACGGTTGAAC 480
consensus_4483#1 GACTTGAATATCTCAAAGCGATAAGCCTTCTCTGCCTCGTCTTTGTATTCGCGGTTGAAC 271
********** ************************************ * *********
consensus_4483#0 TTGTTCATCCACTCTTGGAATCTCACCTTCAGGGCCTGCTCCTCGTCTTCAGACACCTTC 540
consensus_4483#1 TTGTTCATCCACTCTTGGTGTCTCACCTTCAGGGCCGCCTCCTCCTCCTCAGTCAGATTC 331
****************** **************** ****** ** **** ** ***
consensus_4483#0 TTGGAGCCCTCCATCCTCTCATCACTGTCGCTTGTCTTCAGATACTTG---AAAGCTTCT 597
consensus_4483#1 ------------ATCCTCTCATCGTCATCGCTTGTCTTCATGAGCTTAGGTAGTGGTTGT 379
*********** ************* *** * * ** *
consensus_4483#0 GGTTCCCCTGCAGTGTTTGTGGT---------------------------TGCCATAGAC 630
consensus_4483#1 GGTTCTTCTGCAATGTTTGTGGCATACCGCTGATATCCAAGCAATGCAGGTCCTATAGAC 439
***** ***** ********* * * ******
consensus_4483#0 ACTTCCATTGTG------TTACCAGGCCTTAATAAT---TTGAGTTCACGTTCCCCTGAA 681
consensus_4483#1 ACTGCTGCCATGGTGTTGTTACGAGGCCTTAATAATAATTTGAGTTCAAGTCCCCCTGAC 499
*** * ** **** ************* ********* ** *******
consensus_4483#0 GGCACCCTTAGAAAAGAGCCCTGCAGCCTTGTGGT------TCTTCCTGCGTTGTAAGCA 735
consensus_4483#1 AGCACCCTGAGAGAGGAGCCCTGGAGCCTCGTGGTATTGGATCTTCCGACATGGTGAGCA 559
******* *** * ******** ***** ***** ****** * * ** ****
consensus_4483#0 CGGCCA-GGAGGAGAAGACTTGC------------------------------------- 757
consensus_4483#1 AGGCCATGAAGAAGATGACTTGCTGCTGCTCCTCTCCTCATGGCGAACAATCCCTAGGTT 619
***** * ** *** *******
consensus_4483#0 ------------------------------------------------------------
consensus_4483#1 GGCTAGATGAATCGACCAAACAACAAATTAAGCGATCAGGCGATCTCTGGTTATCTCGAT 679
consensus_4483#0 --------------------------------------------
consensus_4483#1 CGGCGCAGGGCGGCTAGGGCACGCGGCGCCCGACGTTGGGTGAT 723
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||