cluster # 4491

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Oryza sativa
cluster # 4491 cluster # 4491 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4491#0 length = 1563 sequences # 1

consensus_4491#1 length = 443 sequences # 2

consensusID : consensus_4491#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1563
fasta sequence

                              [AGCAGACTCGCTGATGACTGTCATGATGAAGCTGGGATGGTCTTCGCCAGAGGAAATGGCACAGCTTGCCGTGTCTCTCGGGGCTACTTGTATTCTTGCTCCCTGGATGGGCTGCTCGCCGGAAAACCCAACATGATCGCTGGGGCAGGAGGCCACAAGGATGAGGACGGGAGGAAAGTCAAGCTTCCAGCTAATGTAGCCGTGGGCAAGAGCGTTTTCCGGCGAAGACGAGCAGCCGGAGAGATGTACACCGGCGCCGGCCCCAGCGCAGCAGTCTGCTTCTGCAATTTCTCTCTCGTCATGATGGCTGGAGCAGGGGATGGCTCTCACGCCTGGACGATCGTCGCTAGAAGTCGGAGACGAGGAGGAGAAGGAGCAGTAGCAGGAGGAATGATGTGAAGCGCCAGCGGGAGCTTCCTCTGCGCCATCCTTGCCGTGAACCCGGTCCATCGCATCAGGTGTTTCTTGGTCAAGTTCTTGGCTTCTTGAATTCACCGGCCGGGGAATCGTCACAAGGTTCGCCGGCGGGAGACGAGCAGCAACAATACCTCAACGCCGGTGGCGCCCGCCTCACCCTCGTGCCCTTTCTTGGTTCCGGAGGTGGGATCCTGGCCCTGGGAGGCGACGAGGCGGAGGTTGACGGGAAGATGCAGGCGGGGGCAAGAACTCAACGCCGGTGGCGCGATGGGCTGGAACGGAGGTGCCTGCTTCACCGTCGTGTTCTTTCTCGATTGCCGAGGTGGGGATCCTCCGATCCTGGGAGGTGACGAGACGAGGCGGAGGTTGACGGGAAGATGGAGAAAACAGAGACGAGGAGGAAGGGGCGGAAGGAGGAAGAAGAAGAAGAGGAGGGAAACAAGCAGCTTTAAACAGGGTTGGGATGCTTGGAGATTCGTGAGAAGAAGTGCTTCCCCACCGTTTGATTATGTTCCTTGATTCGTGTATACATCTCGACCTACGACTTACATCCAGGACTGCGTCTCTGCGTCGGCGGCTGGCTTCGATCCAGGTGTTGGAACTTGGAGTTGGAGGCTCCGATCGAGATGGGAATCCGCCGCATGGCTTCCCGCGACCACCAGCACAGCCTCAAGGAAACGACGGCGAAGCGTGGCCGCCGACGAGGATCAGCTAGCTAGCACTTGATCGATGATCATCGCTGCGTGCGTCGCTCCGGGGTCAGCGTGTTCCTCCACGTCTGCCTCTGCCGAGCAAGAGGATCAGCTAGCTTGAGGTGCAGCGGCTAGGCTACCCGTCGAGGCGTCGACCATTGGGAGGACGCACACGCCGGCCGGGCTCACCGCCATACGCACCAGCAATTGAGCCAGAGGGGGACGGATGGCGAGTTCAGGCATCCCTTTATCTGGCATCTGCGCCGCCGCCCGACACACGTGAGCGGCTGCAAGATTCATGTAGGGGTTCTGTACTCTACTAATTCATCATTGGTGCAATTCATTTGTACTGTATTATATCCAGTGTTCTAAATCTCCGGAGATTTAGAGCATTGATTATATCAAAACACGTATAACGAATCATATATATTTTTCGATATACACTACCTGATTA]

[+] EMBL AK063267             [AGCAGACTCGCTGATGACTGTCATGATGAAGCTGGGATGGTCTTCGCCAGAGGAAATGGCACAGCTTGCCGTGTCTCTCGGGGCTACTTGTATTCTTGCTCCCTGGATGGGCTGCTCGCCGGAAAACCCAACATGATCGCTGGGGCAGGAGGCCACAAGGATGAGGACGGGAGGAAAGTCAAGCTTCCAGCTAATGTAGCCGTGGGCAAGAGCGTTTTCCGGCGAAGACGAGCAGCCGGAGAGATGTACACCGGCGCCGGCCCCAGCGCAGCAGTCTGCTTCTGCAATTTCTCTCTCGTCATGATGGCTGGAGCAGGGGATGGCTCTCACGCCTGGACGATCGTCGCTAGAAGTCGGAGACGAGGAGGAGAAGGAGCAGTAGCAGGAGGAATGATGTGAAGCGCCAGCGGGAGCTTCCTCTGCGCCATCCTTGCCGTGAACCCGGTCCATCGCATCAGGTGTTTCTTGGTCAAGTTCTTGGCTTCTTGAATTCACCGGCCGGGGAATCGTCACAAGGTTCGCCGGCGGGAGACGAGCAGCAACAATACCTCAACGCCGGTGGCGCCCGCCTCACCCTCGTGCCCTTTCTTGGTTCCGGAGGTGGGATCCTGGCCCTGGGAGGCGACGAGGCGGAGGTTGACGGGAAGATGCAGGCGGGGGCAAGAACTCAACGCCGGTGGCGCGATGGGCTGGAACGGAGGTGCCTGCTTCACCGTCGTGTTCTTTCTCGATTGCCGAGGTGGGGATCCTCCGATCCTGGGAGGTGACGAGACGAGGCGGAGGTTGACGGGAAGATGGAGAAAACAGAGACGAGGAGGAAGGGGCGGAAGGAGGAAGAAGAAGAAGAGGAGGGAAACAAGCAGCTTTAAACAGGGTTGGGATGCTTGGAGATTCGTGAGAAGAAGTGCTTCCCCACCGTTTGATTATGTTCCTTGATTCGTGTATACATCTCGACCTACGACTTACATCCAGGACTGCGTCTCTGCGTCGGCGGCTGGCTTCGATCCAGGTGTTGGAACTTGGAGTTGGAGGCTCCGATCGAGATGGGAATCCGCCGCATGGCTTCCCGCGACCACCAGCACAGCCTCAAGGAAACGACGGCGAAGCGTGGCCGCCGACGAGGATCAGCTAGCTAGCACTTGATCGATGATCATCGCTGCGTGCGTCGCTCCGGGGTCAGCGTGTTCCTCCACGTCTGCCTCTGCCGAGCAAGAGGATCAGCTAGCTTGAGGTGCAGCGGCTAGGCTACCCGTCGAGGCGTCGACCATTGGGAGGACGCACACGCCGGCCGGGCTCACCGCCATACGCACCAGCAATTGAGCCAGAGGGGGACGGATGGCGAGTTCAGGCATCCCTTTATCTGGCATCTGCGCCGCCGCCCGACACACGTGAGCGGCTGCAAGATTCATGTAGGGGTTCTGTACTCTACTAATTCATCATTGGTGCAATTCATTTGTACTGTATTATATCCAGTGTTCTAAATCTCCGGAGATTTAGAGCATTGATTATATCAAAACACGTATAACGAATCATATATATTTTTCGATATACACTACCTGATTA]




>consensus_4491#0
AGCAGACTCGCTGATGACTGTCATGATGAAGCTGGGATGGTCTTCGCCAGAGGAAATGGC
ACAGCTTGCCGTGTCTCTCGGGGCTACTTGTATTCTTGCTCCCTGGATGGGCTGCTCGCC
GGAAAACCCAACATGATCGCTGGGGCAGGAGGCCACAAGGATGAGGACGGGAGGAAAGTC
AAGCTTCCAGCTAATGTAGCCGTGGGCAAGAGCGTTTTCCGGCGAAGACGAGCAGCCGGA
GAGATGTACACCGGCGCCGGCCCCAGCGCAGCAGTCTGCTTCTGCAATTTCTCTCTCGTC
ATGATGGCTGGAGCAGGGGATGGCTCTCACGCCTGGACGATCGTCGCTAGAAGTCGGAGA
CGAGGAGGAGAAGGAGCAGTAGCAGGAGGAATGATGTGAAGCGCCAGCGGGAGCTTCCTC
TGCGCCATCCTTGCCGTGAACCCGGTCCATCGCATCAGGTGTTTCTTGGTCAAGTTCTTG
GCTTCTTGAATTCACCGGCCGGGGAATCGTCACAAGGTTCGCCGGCGGGAGACGAGCAGC
AACAATACCTCAACGCCGGTGGCGCCCGCCTCACCCTCGTGCCCTTTCTTGGTTCCGGAG
GTGGGATCCTGGCCCTGGGAGGCGACGAGGCGGAGGTTGACGGGAAGATGCAGGCGGGGG
CAAGAACTCAACGCCGGTGGCGCGATGGGCTGGAACGGAGGTGCCTGCTTCACCGTCGTG
TTCTTTCTCGATTGCCGAGGTGGGGATCCTCCGATCCTGGGAGGTGACGAGACGAGGCGG
AGGTTGACGGGAAGATGGAGAAAACAGAGACGAGGAGGAAGGGGCGGAAGGAGGAAGAAG
AAGAAGAGGAGGGAAACAAGCAGCTTTAAACAGGGTTGGGATGCTTGGAGATTCGTGAGA
AGAAGTGCTTCCCCACCGTTTGATTATGTTCCTTGATTCGTGTATACATCTCGACCTACG
ACTTACATCCAGGACTGCGTCTCTGCGTCGGCGGCTGGCTTCGATCCAGGTGTTGGAACT
TGGAGTTGGAGGCTCCGATCGAGATGGGAATCCGCCGCATGGCTTCCCGCGACCACCAGC
ACAGCCTCAAGGAAACGACGGCGAAGCGTGGCCGCCGACGAGGATCAGCTAGCTAGCACT
TGATCGATGATCATCGCTGCGTGCGTCGCTCCGGGGTCAGCGTGTTCCTCCACGTCTGCC
TCTGCCGAGCAAGAGGATCAGCTAGCTTGAGGTGCAGCGGCTAGGCTACCCGTCGAGGCG
TCGACCATTGGGAGGACGCACACGCCGGCCGGGCTCACCGCCATACGCACCAGCAATTGA
GCCAGAGGGGGACGGATGGCGAGTTCAGGCATCCCTTTATCTGGCATCTGCGCCGCCGCC
CGACACACGTGAGCGGCTGCAAGATTCATGTAGGGGTTCTGTACTCTACTAATTCATCAT
TGGTGCAATTCATTTGTACTGTATTATATCCAGTGTTCTAAATCTCCGGAGATTTAGAGC
ATTGATTATATCAAAACACGTATAACGAATCATATATATTTTTCGATATACACTACCTGA
TTA

consensusID : consensus_4491#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 443
fasta sequence

                              [GCTAGCACTTGATNGATGATACANCGCTGCGTGCTTCGCTCCGGNGTCAGCGTGTTCTTCCACGTCTGCCTCTGCCGAGCAAGAGNATCAGCTAGCTTNAGGTGCAGCGGCTAGGNTA-CCCGTCGAGG-CNTCGACCATTGGGAGGACGCACACGCCGNCCGGGCTCACCGCCATACGCACCAGCAATTGAGCCAGAGGGGGACGGATGGCGAGTTCAGGCATCCCTTTATCTGGCATCTGCGCCGCCGCCCGACACACGTGAGCGGCTGCAAGATTCATGTAGGGGTTCTGTACTCTACTAATTCATCATTGGTGCAATTCATTTGTACTGTATTATATCCAGTGTTCTAAATCTCCGGAGATTTAGAGCATTGATTATATCAAAACACGTATAACGAATCATATATATTTTTCGATATACAAAAAAAAAAANAAAAAAAAAA]

[+] EMBL C99631               [GCTAGCACTTGATNGATGATACANCGCTGCGTGCTTCGCTCCGGNGTCAGCGTGTTCTTCCACGTCTGCCTCTGCCGAGCAAGAGNATCAGCTAGCTTNAGGTGCAGCGGCTAGGNTA CCCGTCGAGG CNTCGACCATTGGGAGGACGCACACGCCGNCCGGGCTCACCGCCATACGCACCAGCAATTGAGCCAGAGGGGGACGGATGGCGAGTTCAGGCATCCCTTTATCTGGCATCTGCGCCGCCGCCCGACACACGTGAGCGGCTGCAAGATTCATGTAGGGGTTCTGTACTCTACTAATTCATCATTGGTGCAATTCATTTGTACTGTATTATATCCAGTGTTCTAAATCTCCGGAGATTTAGAGCATTGATTATATCAAAACACGTATAACGAATCATATATATTTTTCGATATACAAAAAAAAAAANAAAAAAAAAA]
[+] EMBL C99529               [                                                                                                              CTAGGNTACCCCGTCGAGGTCNTCGACCATTGGGAGGACGCACACGCCGNCCGGGCTCACCGCCATACGCNCCAGCAATTGAGCCAGAGGGGGACGGATGGCGAGTTCAGNCANCCCTTTATCTGGCATCTGCGCCGCCNCCCGACACACGTGAGCGGCTGCAAGATTCATGTAGGGGTTCTGTACTCTACTAATTCATCATTGGTGCAATTCATTTGTACTGTATTATATCCAGTGTTCTAAATCTCCGGAGATTTNGAGCATTGATTATATCAAAACACGTATAACGAATCATATATATTTTTCGATATACAAAAAAAAAAAAAAAAAAAAAA]




>consensus_4491#1
GCTAGCACTTGATNGATGATACANCGCTGCGTGCTTCGCTCCGGNGTCAGCGTGTTCTTC
CACGTCTGCCTCTGCCGAGCAAGAGNATCAGCTAGCTTNAGGTGCAGCGGCTAGGNTACC
CGTCGAGGCNTCGACCATTGGGAGGACGCACACGCCGNCCGGGCTCACCGCCATACGCAC
CAGCAATTGAGCCAGAGGGGGACGGATGGCGAGTTCAGGCATCCCTTTATCTGGCATCTG
CGCCGCCGCCCGACACACGTGAGCGGCTGCAAGATTCATGTAGGGGTTCTGTACTCTACT
AATTCATCATTGGTGCAATTCATTTGTACTGTATTATATCCAGTGTTCTAAATCTCCGGA
GATTTAGAGCATTGATTATATCAAAACACGTATAACGAATCATATATATTTTTCGATATA
CAAAAAAAAAAANAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4491#0      AGCAGACTCGCTGATGACTGTCATGATGAAGCTGGGATGGTCTTCGCCAGAGGAAATGGC 60
consensus_4491#1      ------------------------------------------------------------
                                                                                  

consensus_4491#0      ACAGCTTGCCGTGTCTCTCGGGGCTACTTGTATTCTTGCTCCCTGGATGGGCTGCTCGCC 120
consensus_4491#1      ------------------------------------------------------------
                                                                                  

consensus_4491#0      GGAAAACCCAACATGATCGCTGGGGCAGGAGGCCACAAGGATGAGGACGGGAGGAAAGTC 180
consensus_4491#1      ------------------------------------------------------------
                                                                                  

consensus_4491#0      AAGCTTCCAGCTAATGTAGCCGTGGGCAAGAGCGTTTTCCGGCGAAGACGAGCAGCCGGA 240
consensus_4491#1      ------------------------------------------------------------
                                                                                  

consensus_4491#0      GAGATGTACACCGGCGCCGGCCCCAGCGCAGCAGTCTGCTTCTGCAATTTCTCTCTCGTC 300
consensus_4491#1      ------------------------------------------------------------
                                                                                  

consensus_4491#0      ATGATGGCTGGAGCAGGGGATGGCTCTCACGCCTGGACGATCGTCGCTAGAAGTCGGAGA 360
consensus_4491#1      ------------------------------------------------------------
                                                                                  

consensus_4491#0      CGAGGAGGAGAAGGAGCAGTAGCAGGAGGAATGATGTGAAGCGCCAGCGGGAGCTTCCTC 420
consensus_4491#1      ------------------------------------------------------------
                                                                                  

consensus_4491#0      TGCGCCATCCTTGCCGTGAACCCGGTCCATCGCATCAGGTGTTTCTTGGTCAAGTTCTTG 480
consensus_4491#1      ------------------------------------------------------------
                                                                                  

consensus_4491#0      GCTTCTTGAATTCACCGGCCGGGGAATCGTCACAAGGTTCGCCGGCGGGAGACGAGCAGC 540
consensus_4491#1      ------------------------------------------------------------
                                                                                  

consensus_4491#0      AACAATACCTCAACGCCGGTGGCGCCCGCCTCACCCTCGTGCCCTTTCTTGGTTCCGGAG 600
consensus_4491#1      ------------------------------------------------------------
                                                                                  

consensus_4491#0      GTGGGATCCTGGCCCTGGGAGGCGACGAGGCGGAGGTTGACGGGAAGATGCAGGCGGGGG 660
consensus_4491#1      ------------------------------------------------------------
                                                                                  

consensus_4491#0      CAAGAACTCAACGCCGGTGGCGCGATGGGCTGGAACGGAGGTGCCTGCTTCACCGTCGTG 720
consensus_4491#1      ------------------------------------------------------------
                                                                                  

consensus_4491#0      TTCTTTCTCGATTGCCGAGGTGGGGATCCTCCGATCCTGGGAGGTGACGAGACGAGGCGG 780
consensus_4491#1      ------------------------------------------------------------
                                                                                  

consensus_4491#0      AGGTTGACGGGAAGATGGAGAAAACAGAGACGAGGAGGAAGGGGCGGAAGGAGGAAGAAG 840
consensus_4491#1      ------------------------------------------------------------
                                                                                  

consensus_4491#0      AAGAAGAGGAGGGAAACAAGCAGCTTTAAACAGGGTTGGGATGCTTGGAGATTCGTGAGA 900
consensus_4491#1      ------------------------------------------------------------
                                                                                  

consensus_4491#0      AGAAGTGCTTCCCCACCGTTTGATTATGTTCCTTGATTCGTGTATACATCTCGACCTACG 960
consensus_4491#1      ------------------------------------------------------------
                                                                                  

consensus_4491#0      ACTTACATCCAGGACTGCGTCTCTGCGTCGGCGGCTGGCTTCGATCCAGGTGTTGGAACT 1020
consensus_4491#1      ------------------------------------------------------------
                                                                                  

consensus_4491#0      TGGAGTTGGAGGCTCCGATCGAGATGGGAATCCGCCGCATGGCTTCCCGCGACCACCAGC 1080
consensus_4491#1      ------------------------------------------------------------
                                                                                  

consensus_4491#0      ACAGCCTCAAGGAAACGACGGCGAAGCGTGGCCGCCGACGAGGATCAGCTAGCTAGCACT 1140
consensus_4491#1      ---------------------------------------------------GCTAGCACT 9
                                                                         *********

consensus_4491#0      TGATCGATGAT-CATCGCTGCGTGCGTCGCTCCGGGGTCAGCGTGTTCCTCCACGTCTGC 1199
consensus_4491#1      TGATNGATGATACANCGCTGCGTGCTTCGCTCCGGNGTCAGCGTGTTCTTCCACGTCTGC 69
                      **** ****** ** ********** ********* ************ ***********

consensus_4491#0      CTCTGCCGAGCAAGAGGATCAGCTAGCTTGAGGTGCAGCGGCTAGGCTACCCGTCGAGGC 1259
consensus_4491#1      CTCTGCCGAGCAAGAGNATCAGCTAGCTTNAGGTGCAGCGGCTAGGNTACCCGTCGAGGC 129
                      **************** ************ **************** *************

consensus_4491#0      GTCGACCATTGGGAGGACGCACACGCCGGCCGGGCTCACCGCCATACGCACCAGCAATTG 1319
consensus_4491#1      NTCGACCATTGGGAGGACGCACACGCCGNCCGGGCTCACCGCCATACGCACCAGCAATTG 189
                       *************************** *******************************

consensus_4491#0      AGCCAGAGGGGGACGGATGGCGAGTTCAGGCATCCCTTTATCTGGCATCTGCGCCGCCGC 1379
consensus_4491#1      AGCCAGAGGGGGACGGATGGCGAGTTCAGGCATCCCTTTATCTGGCATCTGCGCCGCCGC 249
                      ************************************************************

consensus_4491#0      CCGACACACGTGAGCGGCTGCAAGATTCATGTAGGGGTTCTGTACTCTACTAATTCATCA 1439
consensus_4491#1      CCGACACACGTGAGCGGCTGCAAGATTCATGTAGGGGTTCTGTACTCTACTAATTCATCA 309
                      ************************************************************

consensus_4491#0      TTGGTGCAATTCATTTGTACTGTATTATATCCAGTGTTCTAAATCTCCGGAGATTTAGAG 1499
consensus_4491#1      TTGGTGCAATTCATTTGTACTGTATTATATCCAGTGTTCTAAATCTCCGGAGATTTAGAG 369
                      ************************************************************

consensus_4491#0      CATTGATTATATCAAAACACGTATAACGAATCATATATATTTTTCGATATACACTACCTG 1559
consensus_4491#1      CATTGATTATATCAAAACACGTATAACGAATCATATATATTTTTCGATATACAAAAAAAA 429
                      *****************************************************  *    

consensus_4491#0      ATTA---------- 1563
consensus_4491#1      AAANAAAAAAAAAA 443
                      *