cluster # 4499

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Oryza sativa
cluster # 4499 cluster # 4499 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4499#0 length = 1398 sequences # 1

consensus_4499#1 length = 577 sequences # 2

consensusID : consensus_4499#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1398
fasta sequence

                              [CATACACATGCATGCACACCCGCTGTGAACGAAGGAGCGAGCGAGCGACGATGGGTTCTTGCACATTGTCCTCCGGCGGCGTCTGCGTCGTCGTCGTCCTCCTGTGTTTGGCTGCTTGCTGCCTAACGTGCGCGCGCGGCGCTGTCCCGGCGATCTACGTGCTCGGAGACTCGCAGGCAGACGTAGGGAACAACAACTACCTGCTGCACTCGCTGCTCAAGGCCAACTTCCCTCACAATGGCATCGACTACCCGGGGGGAAAGCCCACCGGCAGGTTCAGCAATGGCTACAACTTCGTCGATTTAATCGCTATCAGTCTCGGGGTGCCCAGCCCTCCTCCATACCTCTCTATAAGCAGCAAACCAATGAACAGCTCCGTATATCTGAAGGGTGTCAATTTTGCTTCAGGAGGAGCAGGGGTGTCTAATCTCACAAACCTGGCCCAGTGCATCAGCTTCGACGAGCAGATAGAGGGGGACTACCACAGAGTCCACGAGGCGCTGGGGAAGCAGCTGGGCATTCCTGGGGCCAAGGCCCACCTTGCCAAATCGCTCTTCGTCGTCGCCATCGGCGGCAACGACATCATCAACGACCTCCTGCTGAGTCCCGTCAGCGAGCTCCTACGCTCCCGAGATGAGATCGTCAGCAATCTGGAAAATACCCTCAAACGCCAGCTGCAGACCTTGTACGACCTTGGGATGCGACGGTTGTTCTTCGTGGGGATAGCACCGCTGGGATGTTGCCCGTTGATACGGGAGCTGAACCCCACCAAGGAATGTGATGCTCAGGCCAACTACATGGCAACTCGGTTAAACGATGCGGCGGTCGTGCTCCTCCGCGACATGAGCGAGACGCATCCGGACTTCACCTACTCCTTCTTCGACACATACACCGCGGTGCTCCAGTCCATTCGTTACCCAGAGGCACATGGCTATAAGGAGGTTAAAGCAGCGTGCTGTGGCCTAGGAGATAACAACGCCATGTTCCTATGCTCGCCGGCGAGCGTGTACTGCGACAACCGGACGAGCTACATGTTCTGGGACGTCGTCCATCCCACGCAGGCCGCGGTTGAGAAGCTTATGAAGATTGCGTTTGATGGATCTGCGCCGTTGGTTTCCCCGAAAAATATCAAGCAGCTCACTGAGAGTTAGGCATTATATAAAGCCAAGAGTACGTGTCTACTGGTACTACTATACTATACTACTATTATCACCACTGGAGAAATTTTGAATCATTAATTTAGGAGTTATATTTAGTGCCAGTAACTAACGTGGTAAAGTAAACAAGGGATTTGCTAGATTTGAGGTGACTGATATTAATTTGTAAATTTACAGTCTCCTAAAATTACACATTTTGCAAAGTTTAAAATTGCATAGCTATACAATGTGAAACTTTACT]

[+] EMBL AK070980             [CATACACATGCATGCACACCCGCTGTGAACGAAGGAGCGAGCGAGCGACGATGGGTTCTTGCACATTGTCCTCCGGCGGCGTCTGCGTCGTCGTCGTCCTCCTGTGTTTGGCTGCTTGCTGCCTAACGTGCGCGCGCGGCGCTGTCCCGGCGATCTACGTGCTCGGAGACTCGCAGGCAGACGTAGGGAACAACAACTACCTGCTGCACTCGCTGCTCAAGGCCAACTTCCCTCACAATGGCATCGACTACCCGGGGGGAAAGCCCACCGGCAGGTTCAGCAATGGCTACAACTTCGTCGATTTAATCGCTATCAGTCTCGGGGTGCCCAGCCCTCCTCCATACCTCTCTATAAGCAGCAAACCAATGAACAGCTCCGTATATCTGAAGGGTGTCAATTTTGCTTCAGGAGGAGCAGGGGTGTCTAATCTCACAAACCTGGCCCAGTGCATCAGCTTCGACGAGCAGATAGAGGGGGACTACCACAGAGTCCACGAGGCGCTGGGGAAGCAGCTGGGCATTCCTGGGGCCAAGGCCCACCTTGCCAAATCGCTCTTCGTCGTCGCCATCGGCGGCAACGACATCATCAACGACCTCCTGCTGAGTCCCGTCAGCGAGCTCCTACGCTCCCGAGATGAGATCGTCAGCAATCTGGAAAATACCCTCAAACGCCAGCTGCAGACCTTGTACGACCTTGGGATGCGACGGTTGTTCTTCGTGGGGATAGCACCGCTGGGATGTTGCCCGTTGATACGGGAGCTGAACCCCACCAAGGAATGTGATGCTCAGGCCAACTACATGGCAACTCGGTTAAACGATGCGGCGGTCGTGCTCCTCCGCGACATGAGCGAGACGCATCCGGACTTCACCTACTCCTTCTTCGACACATACACCGCGGTGCTCCAGTCCATTCGTTACCCAGAGGCACATGGCTATAAGGAGGTTAAAGCAGCGTGCTGTGGCCTAGGAGATAACAACGCCATGTTCCTATGCTCGCCGGCGAGCGTGTACTGCGACAACCGGACGAGCTACATGTTCTGGGACGTCGTCCATCCCACGCAGGCCGCGGTTGAGAAGCTTATGAAGATTGCGTTTGATGGATCTGCGCCGTTGGTTTCCCCGAAAAATATCAAGCAGCTCACTGAGAGTTAGGCATTATATAAAGCCAAGAGTACGTGTCTACTGGTACTACTATACTATACTACTATTATCACCACTGGAGAAATTTTGAATCATTAATTTAGGAGTTATATTTAGTGCCAGTAACTAACGTGGTAAAGTAAACAAGGGATTTGCTAGATTTGAGGTGACTGATATTAATTTGTAAATTTACAGTCTCCTAAAATTACACATTTTGCAAAGTTTAAAATTGCATAGCTATACAATGTGAAACTTTACT]




>consensus_4499#0
CATACACATGCATGCACACCCGCTGTGAACGAAGGAGCGAGCGAGCGACGATGGGTTCTT
GCACATTGTCCTCCGGCGGCGTCTGCGTCGTCGTCGTCCTCCTGTGTTTGGCTGCTTGCT
GCCTAACGTGCGCGCGCGGCGCTGTCCCGGCGATCTACGTGCTCGGAGACTCGCAGGCAG
ACGTAGGGAACAACAACTACCTGCTGCACTCGCTGCTCAAGGCCAACTTCCCTCACAATG
GCATCGACTACCCGGGGGGAAAGCCCACCGGCAGGTTCAGCAATGGCTACAACTTCGTCG
ATTTAATCGCTATCAGTCTCGGGGTGCCCAGCCCTCCTCCATACCTCTCTATAAGCAGCA
AACCAATGAACAGCTCCGTATATCTGAAGGGTGTCAATTTTGCTTCAGGAGGAGCAGGGG
TGTCTAATCTCACAAACCTGGCCCAGTGCATCAGCTTCGACGAGCAGATAGAGGGGGACT
ACCACAGAGTCCACGAGGCGCTGGGGAAGCAGCTGGGCATTCCTGGGGCCAAGGCCCACC
TTGCCAAATCGCTCTTCGTCGTCGCCATCGGCGGCAACGACATCATCAACGACCTCCTGC
TGAGTCCCGTCAGCGAGCTCCTACGCTCCCGAGATGAGATCGTCAGCAATCTGGAAAATA
CCCTCAAACGCCAGCTGCAGACCTTGTACGACCTTGGGATGCGACGGTTGTTCTTCGTGG
GGATAGCACCGCTGGGATGTTGCCCGTTGATACGGGAGCTGAACCCCACCAAGGAATGTG
ATGCTCAGGCCAACTACATGGCAACTCGGTTAAACGATGCGGCGGTCGTGCTCCTCCGCG
ACATGAGCGAGACGCATCCGGACTTCACCTACTCCTTCTTCGACACATACACCGCGGTGC
TCCAGTCCATTCGTTACCCAGAGGCACATGGCTATAAGGAGGTTAAAGCAGCGTGCTGTG
GCCTAGGAGATAACAACGCCATGTTCCTATGCTCGCCGGCGAGCGTGTACTGCGACAACC
GGACGAGCTACATGTTCTGGGACGTCGTCCATCCCACGCAGGCCGCGGTTGAGAAGCTTA
TGAAGATTGCGTTTGATGGATCTGCGCCGTTGGTTTCCCCGAAAAATATCAAGCAGCTCA
CTGAGAGTTAGGCATTATATAAAGCCAAGAGTACGTGTCTACTGGTACTACTATACTATA
CTACTATTATCACCACTGGAGAAATTTTGAATCATTAATTTAGGAGTTATATTTAGTGCC
AGTAACTAACGTGGTAAAGTAAACAAGGGATTTGCTAGATTTGAGGTGACTGATATTAAT
TTGTAAATTTACAGTCTCCTAAAATTACACATTTTGCAAAGTTTAAAATTGCATAGCTAT
ACAATGTGAAACTTTACT

consensusID : consensus_4499#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 577
fasta sequence

                              [GCTGTGAAGGAACAATGGGTTTCTGGCGCCGGTGCACACCGTCGACATCGGCCTGTGCAGGCGTCTGTGTCGTCGCCCTCCTCCTTGTGGCTTTGGCTTGCTGCCCGACGCGCGCACGCGGCGCTGCCCCGGCGGTGTACGTACTTGGCGACTCGCAGGCGGACGTCGGGAACAACAACTACCTGCCAGCGACGCTGCCGATGTACAAGGCCAACTACCCTCACAACGGCGTCGACTACCCGGGGGGCAAGCCCACCGGCAGGTTCAGCAACGGCTACAACTTCGTCGACTACCTTGGTGAGTATTTCATCAACGCGTACACTGCGCACTCTTGGGAATTAAAATTAGAGGCTATTGTATTGGCTATGTATATACATGTGACCATTGTCTTAAGGCTCGTTCGGGTTGGAGAGGGTTGAAGGGGATTGGAGGGGTTTGAGGGGGAATAATTTCACACCACAATAAATATGTAATAAATTTCCGCTGATCTCTTTCTCTTTGGGATTAACCGAAGATGGCCTTAAGGGAAAATATTTTTTTCACGGCAAATACTTCTCTTGTTGTTCCATTAATTGCA]

[+] EMBL CF326595             [GCTGTGAAGGAACAATGGGTTTCTGGCGCCGGTGCACACCGTCGACATCGGCCTGTGCAGGCGTCTGTGTCGTCGCCCTCCTCCTTGTGGCTTTGGCTTGCTGCCCGACGCGCGCACGCGGCGCTGCCCCGGCGGTGTACGTACTTGGCGACTCGCAGGCGGACGTCGGGAACAACAACTACCTGCCAGCGACGCTGCCGATGTACAAGGCCAACTACCCTCACAACGGCGTCGACTACCCGGGGGGCAAGCCCACCGGCAGGTTCAGCAACGGCTACAACTTCGTCGACTACCTTGGTGAGTATTTCATCAACGCGTACACTGCGCACTCTTGGGAATTAAAATTAGAGGCTATTGTATTGGCTATGTATATACATGTGACCATTGTCTTAAGGCTCGTTCGGGTTGGAGAGGGTTGAAGGGGATTGGAGGGGTTTGAGGGGGAATAATTTCACACCACAATAAATATGTAATAAATTTCCGCTGATCTCTTTCTCTTTGGGATTAACCGAAGATGGCCTTAAGGGAAAATATTTTTTTCACGGCAAATACTTCTCTTGTTGTTCCATTAATTGCA]
[+] EMBL CF325005             [                                                                                                                                                                                                              AAGGCCAACTACCCTCACAACGGCGTCGACTACCCGGGGGGCAAGCCAACCGGCAGGTTCAGCAACGGCTACAACTTCGTCGACTACCTTGGTGAGTATTTCATCAACGCGTACACTGCGCACTCTTGGGAATTAAAATTAGAGGCTATGGTATTGGCTATGTATATACATGTGACCATTGTCTTAAGGCTCGTTCGGGTTGGAGAGGGTTGAAGGGGATTGGAGGGGT                                                                                                                                              ]




>consensus_4499#1
GCTGTGAAGGAACAATGGGTTTCTGGCGCCGGTGCACACCGTCGACATCGGCCTGTGCAG
GCGTCTGTGTCGTCGCCCTCCTCCTTGTGGCTTTGGCTTGCTGCCCGACGCGCGCACGCG
GCGCTGCCCCGGCGGTGTACGTACTTGGCGACTCGCAGGCGGACGTCGGGAACAACAACT
ACCTGCCAGCGACGCTGCCGATGTACAAGGCCAACTACCCTCACAACGGCGTCGACTACC
CGGGGGGCAAGCCCACCGGCAGGTTCAGCAACGGCTACAACTTCGTCGACTACCTTGGTG
AGTATTTCATCAACGCGTACACTGCGCACTCTTGGGAATTAAAATTAGAGGCTATTGTAT
TGGCTATGTATATACATGTGACCATTGTCTTAAGGCTCGTTCGGGTTGGAGAGGGTTGAA
GGGGATTGGAGGGGTTTGAGGGGGAATAATTTCACACCACAATAAATATGTAATAAATTT
CCGCTGATCTCTTTCTCTTTGGGATTAACCGAAGATGGCCTTAAGGGAAAATATTTTTTT
CACGGCAAATACTTCTCTTGTTGTTCCATTAATTGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4499#0      CATACACATGCATGCACACCCGCTGTGAACGAAGGAGCGAG--CGAGCGACGATGGGTTC 58
consensus_4499#1      ---------------------GCTGTGAAGGAACAATGGGTTTCTGGCGCCGGTGCACAC 39
                                           ******** ***  *  *    *  *** ** **    *

consensus_4499#0      TTGC-ACATTGTCCTCCGGCGGCGTCTGCGTCGTCGTCGTCCTCCT-GTGTTTGGCTGCT 116
consensus_4499#1      CGTCGACATCGGCCTGTGCAGGCGTCTGTGTCGTCGCCCTCCTCCTTGTGGCTT-TGGCT 98
                         * **** * ***  *  ******** ******* * ******* ***  *    ***

consensus_4499#0      TGCTGCCTAACGTGCGCGCGCGGCGCTGTCCCGGCGATCTACGTGCTCGGAGACTCGCAG 176
consensus_4499#1      TGCTGCCCGACGCGCGCACGCGGCGCTGCCCCGGCGGTGTACGTACTTGGCGACTCGCAG 158
                      *******  *** **** ********** ******* * ***** ** ** *********

consensus_4499#0      GCAGACGTAGGGAACAACAACTACCTGCTGCACTCGCTGCT------CAAGGCCAACTTC 230
consensus_4499#1      GCGGACGTCGGGAACAACAACTACCTGCCAGCGACGCTGCCGATGTACAAGGCCAACTAC 218
                      ** ***** *******************      ******       *********** *

consensus_4499#0      CCTCACAATGGCATCGACTACCCGGGGGGAAAGCCCACCGGCAGGTTCAGCAATGGCTAC 290
consensus_4499#1      CCTCACAACGGCGTCGACTACCCGGGGGGCAAGCCCACCGGCAGGTTCAGCAACGGCTAC 278
                      ******** *** **************** *********************** ******

consensus_4499#0      AACTTCGTCGATTTAATCGCTATCAGTCTCG-----GGGTGCCCAGCCCTCCTCCATACC 345
consensus_4499#1      AACTTCGTCGACTACCTTGGTGAGTATTTCATCAACGCGTACACTGCGCACTCTTGGGAA 338
                      *********** *   * * *     * **      * ** * * ** * *         

consensus_4499#0      TCTCTATAAGCAGCAAAC-CAATGAACAGCTCCGTATATCTGAAGGGTGTC--AATTTTG 402
consensus_4499#1      TTAAAATTAGAGGCTATTGTATTGGCTATGTATATACATGTGACCATTGTCTTAAGGCTC 398
                      *    ** **  ** *    * **   *  *   ** ** ***    ****  **   * 

consensus_4499#0      CTTCAGGAGGAGCAGGGGTGTCTAATCTCACAAACCTGGCCCAGTGCATCAGCTTCGACG 462
consensus_4499#1      GTTCGGGTTGGAGAGGGTTGAAGGGGATTGGAGGGGTTTGAGGGGGAATAATTTCACACC 458
                       *** **  *   **** **       *   *    *      * * ** *  *   ** 

consensus_4499#0      A--GCAGATA-GAGGGGGACTACCACAGAGTCCACGAGGCGCTGGGGAAGCAGCTGGGCA 519
consensus_4499#1      ACAATAAATATGTAATAAATTTCCGCTGATCTCTTTCTCTTTGGGATTAACCGAAGATGG 518
                      *    * *** *      * * ** * **   *          **   * * *  *    

consensus_4499#0      TTCCTGGGGCCAAGGCCCACCTTGC--CAAATCGCTCT-TCGTCGTCGCCATCGGCGGCA 576
consensus_4499#1      CCTTAAGGGAAAATATTTTTTTCACGGCAAATACTTCTCTTGTTGTT-CCATTAATTGCA 577
                            ***  **        *  *  *****   *** * ** **  ****     ***

consensus_4499#0      ACGACATCATCAACGACCTCCTGCTGAGTCCCGTCAGCGAGCTCCTACGCTCCCGAGATG 636
consensus_4499#1      ------------------------------------------------------------
                                                                                  

consensus_4499#0      AGATCGTCAGCAATCTGGAAAATACCCTCAAACGCCAGCTGCAGACCTTGTACGACCTTG 696
consensus_4499#1      ------------------------------------------------------------
                                                                                  

consensus_4499#0      GGATGCGACGGTTGTTCTTCGTGGGGATAGCACCGCTGGGATGTTGCCCGTTGATACGGG 756
consensus_4499#1      ------------------------------------------------------------
                                                                                  

consensus_4499#0      AGCTGAACCCCACCAAGGAATGTGATGCTCAGGCCAACTACATGGCAACTCGGTTAAACG 816
consensus_4499#1      ------------------------------------------------------------
                                                                                  

consensus_4499#0      ATGCGGCGGTCGTGCTCCTCCGCGACATGAGCGAGACGCATCCGGACTTCACCTACTCCT 876
consensus_4499#1      ------------------------------------------------------------
                                                                                  

consensus_4499#0      TCTTCGACACATACACCGCGGTGCTCCAGTCCATTCGTTACCCAGAGGCACATGGCTATA 936
consensus_4499#1      ------------------------------------------------------------
                                                                                  

consensus_4499#0      AGGAGGTTAAAGCAGCGTGCTGTGGCCTAGGAGATAACAACGCCATGTTCCTATGCTCGC 996
consensus_4499#1      ------------------------------------------------------------
                                                                                  

consensus_4499#0      CGGCGAGCGTGTACTGCGACAACCGGACGAGCTACATGTTCTGGGACGTCGTCCATCCCA 1056
consensus_4499#1      ------------------------------------------------------------
                                                                                  

consensus_4499#0      CGCAGGCCGCGGTTGAGAAGCTTATGAAGATTGCGTTTGATGGATCTGCGCCGTTGGTTT 1116
consensus_4499#1      ------------------------------------------------------------
                                                                                  

consensus_4499#0      CCCCGAAAAATATCAAGCAGCTCACTGAGAGTTAGGCATTATATAAAGCCAAGAGTACGT 1176
consensus_4499#1      ------------------------------------------------------------
                                                                                  

consensus_4499#0      GTCTACTGGTACTACTATACTATACTACTATTATCACCACTGGAGAAATTTTGAATCATT 1236
consensus_4499#1      ------------------------------------------------------------
                                                                                  

consensus_4499#0      AATTTAGGAGTTATATTTAGTGCCAGTAACTAACGTGGTAAAGTAAACAAGGGATTTGCT 1296
consensus_4499#1      ------------------------------------------------------------
                                                                                  

consensus_4499#0      AGATTTGAGGTGACTGATATTAATTTGTAAATTTACAGTCTCCTAAAATTACACATTTTG 1356
consensus_4499#1      ------------------------------------------------------------
                                                                                  

consensus_4499#0      CAAAGTTTAAAATTGCATAGCTATACAATGTGAAACTTTACT 1398
consensus_4499#1      ------------------------------------------