cluster # 4515

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Oryza sativa
cluster # 4515 cluster # 4515 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4515#0 length = 841 sequences # 1

consensus_4515#1 length = 395 sequences # 1
consensus_4515#2 length = 331 sequences # 1

consensusID : consensus_4515#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 841
fasta sequence

                              [TTTTCTCAACTCGATCCATCTCTCTCTCTCTCTCGATCTCTCCATTAATTTCTACGTAAGCATTCGTAGCTATGGAGGAGTGCAAGGGCGGTGGCATGTCGCCGTCCTCCTCCATGGATAGCAGCACCCACCCGGCGCTGTCCACGACGTCGTCGGCGGCGACGGCGAGGCGGGACCTCAGCACCGATCTCCGGCTAGGGCTTAGCCTCTCGACGTCGTCGTCGTCCTCCCTCCGGCGGCGCTCGCCGACGGCGAACGCTGTTCGTGAAGGTGTACATGGAGGGCGTCCCGATCGGCCGGAAGCTCGACCTGCTCTTGCTGGATGGGTATGACAGCCTCCTCATCAAGCTCTGCCACATGTTCAAGACGCCCATCACCTATGCTGATGTTATGGAGTGCCATCAACAAGTTCCTGGCCAGAAGGCTGCCCATGTCCTCACCTATGAAGACCAGGACGGGGACTGGATGATGGTTGGGGACGTCCCATGGGAACTCTTCCTGAGCAGCGTAAAGAAGCTCAGGATTGCAAGGATGGATAAATGCTAAAACAGTTGCATTTGAATTTCTCTTTGTTTCTTCTTTTTTTTTTCCCATTGGAGGGAGGGCCCTTATTATATGTAGGTTAGTTGAAAAAGATTTTTGCTGAAGCTGAGATTATACTTACTAGCAGTGTACATTATAGTAAAGAAGTGTAGCATTATCAGCTACCTACCGTATAGCAGAACTGATTATTATTTTTCCTCTACTTCTTTAACTGGTTTGTAAATATCATGTATTCGTTAAAGAGAGTAGAGAAGTTGATAACACAAAGGTTCCATTTTACCTCAGTGGAATCAAATTT]

[+] EMBL AK103865             [TTTTCTCAACTCGATCCATCTCTCTCTCTCTCTCGATCTCTCCATTAATTTCTACGTAAGCATTCGTAGCTATGGAGGAGTGCAAGGGCGGTGGCATGTCGCCGTCCTCCTCCATGGATAGCAGCACCCACCCGGCGCTGTCCACGACGTCGTCGGCGGCGACGGCGAGGCGGGACCTCAGCACCGATCTCCGGCTAGGGCTTAGCCTCTCGACGTCGTCGTCGTCCTCCCTCCGGCGGCGCTCGCCGACGGCGAACGCTGTTCGTGAAGGTGTACATGGAGGGCGTCCCGATCGGCCGGAAGCTCGACCTGCTCTTGCTGGATGGGTATGACAGCCTCCTCATCAAGCTCTGCCACATGTTCAAGACGCCCATCACCTATGCTGATGTTATGGAGTGCCATCAACAAGTTCCTGGCCAGAAGGCTGCCCATGTCCTCACCTATGAAGACCAGGACGGGGACTGGATGATGGTTGGGGACGTCCCATGGGAACTCTTCCTGAGCAGCGTAAAGAAGCTCAGGATTGCAAGGATGGATAAATGCTAAAACAGTTGCATTTGAATTTCTCTTTGTTTCTTCTTTTTTTTTTCCCATTGGAGGGAGGGCCCTTATTATATGTAGGTTAGTTGAAAAAGATTTTTGCTGAAGCTGAGATTATACTTACTAGCAGTGTACATTATAGTAAAGAAGTGTAGCATTATCAGCTACCTACCGTATAGCAGAACTGATTATTATTTTTCCTCTACTTCTTTAACTGGTTTGTAAATATCATGTATTCGTTAAAGAGAGTAGAGAAGTTGATAACACAAAGGTTCCATTTTACCTCAGTGGAATCAAATTT]




>consensus_4515#0
TTTTCTCAACTCGATCCATCTCTCTCTCTCTCTCGATCTCTCCATTAATTTCTACGTAAG
CATTCGTAGCTATGGAGGAGTGCAAGGGCGGTGGCATGTCGCCGTCCTCCTCCATGGATA
GCAGCACCCACCCGGCGCTGTCCACGACGTCGTCGGCGGCGACGGCGAGGCGGGACCTCA
GCACCGATCTCCGGCTAGGGCTTAGCCTCTCGACGTCGTCGTCGTCCTCCCTCCGGCGGC
GCTCGCCGACGGCGAACGCTGTTCGTGAAGGTGTACATGGAGGGCGTCCCGATCGGCCGG
AAGCTCGACCTGCTCTTGCTGGATGGGTATGACAGCCTCCTCATCAAGCTCTGCCACATG
TTCAAGACGCCCATCACCTATGCTGATGTTATGGAGTGCCATCAACAAGTTCCTGGCCAG
AAGGCTGCCCATGTCCTCACCTATGAAGACCAGGACGGGGACTGGATGATGGTTGGGGAC
GTCCCATGGGAACTCTTCCTGAGCAGCGTAAAGAAGCTCAGGATTGCAAGGATGGATAAA
TGCTAAAACAGTTGCATTTGAATTTCTCTTTGTTTCTTCTTTTTTTTTTCCCATTGGAGG
GAGGGCCCTTATTATATGTAGGTTAGTTGAAAAAGATTTTTGCTGAAGCTGAGATTATAC
TTACTAGCAGTGTACATTATAGTAAAGAAGTGTAGCATTATCAGCTACCTACCGTATAGC
AGAACTGATTATTATTTTTCCTCTACTTCTTTAACTGGTTTGTAAATATCATGTATTCGT
TAAAGAGAGTAGAGAAGTTGATAACACAAAGGTTCCATTTTACCTCAGTGGAATCAAATT
T

consensusID : consensus_4515#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence

                              [CCATCTCTCTCTCTCTCTCGATCTCTCCATTAATTTCTACGTAAGCATTCGTAGCTATGGAGGAGTGCAAGGGCGGTGGCATGTCGCCGTCCTCCTCCATGGATAGCAGCACCCACCCGGCGCTCGCCGACGGGAACGCTGTTCGTGAAGGTGTACATGGAGGGCGTCCCGATCGGCCGGAAGCTCGACCTGCTCTTGCTGGATGGGTATGACAGCCTCCTCATCAAGCTCTGCCANATGTTCAAGACGNCCATCACCTATGCTGATGTTATGGAGTGCCATCAACAAGTTCCTGGCCAGAAAGGCTTGCCCATGTCCTCAGGNGGTTNCAAAAAAAAANNGNNNNNNNNNNNNANANAAAGGGGGCCCCCGGGGGGCCCNTTTTTCCCTNGGGG]

[+] EMBL OSC09161             [CCATCTCTCTCTCTCTCTCGATCTCTCCATTAATTTCTACGTAAGCATTCGTAGCTATGGAGGAGTGCAAGGGCGGTGGCATGTCGCCGTCCTCCTCCATGGATAGCAGCACCCACCCGGCGCTCGCCGACGGGAACGCTGTTCGTGAAGGTGTACATGGAGGGCGTCCCGATCGGCCGGAAGCTCGACCTGCTCTTGCTGGATGGGTATGACAGCCTCCTCATCAAGCTCTGCCANATGTTCAAGACGNCCATCACCTATGCTGATGTTATGGAGTGCCATCAACAAGTTCCTGGCCAGAAAGGCTTGCCCATGTCCTCAGGNGGTTNCAAAAAAAAANNGNNNNNNNNNNNNANANAAAGGGGGCCCCCGGGGGGCCCNTTTTTCCCTNGGGG]




>consensus_4515#1
CCATCTCTCTCTCTCTCTCGATCTCTCCATTAATTTCTACGTAAGCATTCGTAGCTATGG
AGGAGTGCAAGGGCGGTGGCATGTCGCCGTCCTCCTCCATGGATAGCAGCACCCACCCGG
CGCTCGCCGACGGGAACGCTGTTCGTGAAGGTGTACATGGAGGGCGTCCCGATCGGCCGG
AAGCTCGACCTGCTCTTGCTGGATGGGTATGACAGCCTCCTCATCAAGCTCTGCCANATG
TTCAAGACGNCCATCACCTATGCTGATGTTATGGAGTGCCATCAACAAGTTCCTGGCCAG
AAAGGCTTGCCCATGTCCTCAGGNGGTTNCAAAAAAAAANNGNNNNNNNNNNNNANANAA
AGGGGGCCCCCGGGGGGCCCNTTTTTCCCTNGGGG

consensusID : consensus_4515#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 331
fasta sequence

                              [AGCTCAGGNTTGCAAGGATGGATAAATGCTAAANCAGTTGCATTTGAATTTCTCTTTGTTTCTTCTTTTTTTTTTCCCATTGGNGGGAGGGCCCTTATTATATGTAGGTTAGTTGAAAAAGATTTTTGCTGAAGCTGNGATTATACTTACTAGCAGTGTACATTNTAGTAAAGAAGTGTAGCATTATCAGCTNCCTACCGTATAGCAGAACTGATTATTATTTTTCCTCTACTTCTTTAACTGGTTTGTAAATATCATGTATTCGTTAAAGAGNGTNGNGNTGTTGNTNACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C98167               [AGCTCAGGNTTGCAAGGATGGATAAATGCTAAANCAGTTGCATTTGAATTTCTCTTTGTTTCTTCTTTTTTTTTTCCCATTGGNGGGAGGGCCCTTATTATATGTAGGTTAGTTGAAAAAGATTTTTGCTGAAGCTGNGATTATACTTACTAGCAGTGTACATTNTAGTAAAGAAGTGTAGCATTATCAGCTNCCTACCGTATAGCAGAACTGATTATTATTTTTCCTCTACTTCTTTAACTGGTTTGTAAATATCATGTATTCGTTAAAGAGNGTNGNGNTGTTGNTNACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_4515#2
AGCTCAGGNTTGCAAGGATGGATAAATGCTAAANCAGTTGCATTTGAATTTCTCTTTGTT
TCTTCTTTTTTTTTTCCCATTGGNGGGAGGGCCCTTATTATATGTAGGTTAGTTGAAAAA
GATTTTTGCTGAAGCTGNGATTATACTTACTAGCAGTGTACATTNTAGTAAAGAAGTGTA
GCATTATCAGCTNCCTACCGTATAGCAGAACTGATTATTATTTTTCCTCTACTTCTTTAA
CTGGTTTGTAAATATCATGTATTCGTTAAAGAGNGTNGNGNTGTTGNTNACAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4515#0      TTTTCTCAACTCGATCCATCTCTCTCTCTCTCTCGATCTCTCCATTAATTTCTACGTAAG 60
consensus_4515#2      ------------------------------------------------------------
consensus_4515#1      ------------------------------------------------------------
                                                                                  

consensus_4515#0      CATTCGTAGCTATGGAGGAGTGCAAGGGCGGTGGCATGTCGCCGTCCTCCTCCATGGATA 120
consensus_4515#2      ------------------------------------------------------------
consensus_4515#1      ------------------------------------------------------------
                                                                                  

consensus_4515#0      GCAGCACCCACCCGGCGCTGTCCACGACGTCGTCGGCGGCGACGGCGAGGCGGGACCTCA 180
consensus_4515#2      ------------------------------------------------------------
consensus_4515#1      ------------------------------------------------------------
                                                                                  

consensus_4515#0      GCACCGATCTCCGGCTAGGGCTTAGCCTCTCGACGTCGTCGTCGTCCTCCCTCCGGCGGC 240
consensus_4515#2      ------------------------------------------------------------
consensus_4515#1      ------------------------------------------------------------
                                                                                  

consensus_4515#0      GCTCGCCGACGGCGAACGCTGTTCGTGAAGGTGTACATGGAGGGCGTCCCGATCGGCCGG 300
consensus_4515#2      ------------------------------------------------------------
consensus_4515#1      ------------------------------------------------------------
                                                                                  

consensus_4515#0      AAGCTCGACCTGCTCTTGCTGGATGGGTATGACAGCCTCCTCATCAAGCTCTGCCACATG 360
consensus_4515#2      ------------------------------------------------------------
consensus_4515#1      ------------------------------------------------------------
                                                                                  

consensus_4515#0      TTCAAGACGCCCATCACCTATGCTGATGTTATGGAGTGCCATCAACAAGTTCCTGGCCAG 420
consensus_4515#2      ------------------------------------------------------------
consensus_4515#1      ------------------------------------------------------------
                                                                                  

consensus_4515#0      AAGGCTGCCCATGTCCTCACCTATGAAGACCAGGACGGGGACTGGATGATGGTTGGGGAC 480
consensus_4515#2      ------------------------------------------------------------
consensus_4515#1      --------------------------------------------------------CCAT 4
                                                                                  

consensus_4515#0      GTCCCATGGGAACTCTTCCTGAGCAGCGTAAAGAAGCTCAGGATT-GCAAGGATGGATAA 539
consensus_4515#2      ----------------------------------AGCTCAGGNTT-GCAAGGATGGATAA 25
consensus_4515#1      CTCTCTCTCTCTCTCGATCTCTCCATTAATTTCTACGTAAGCATTCGTAGCTATGGAGGA 64
                                                        *  * **  ** * *   *****  *

consensus_4515#0      ATGCTAAAACAGTTGCATTT----GAATTTCTCTTTGTTTCTTCTTTTTTTTTTCCCATT 595
consensus_4515#2      ATGCTAAANCAGTTGCATTT----GAATTTCTCTTTGTTTCTTCTTTTTTTTTTCCCATT 81
consensus_4515#1      GTGCAAGGGCGGTGGCATGTCGCCGTCCTCCTCCATGGATAGCAGCACCCACCCGGCGCT 124
                       *** *   * ** **** *    *   * ***  **  *                *  *

consensus_4515#0      GGAGGGAGGGCCCTTATTATATGTAGGTTAGTTGAAAAAGATTTTTGCTGAAGCTGAGAT 655
consensus_4515#2      GGNGGGAGGGCCCTTATTATATGTAGGTTAGTTGAAAAAGATTTTTGCTGAAGCTGNGAT 141
consensus_4515#1      CGCCGACGGGAACGCTGTTCGTGAAGGTGTACATGGAGGGCGTCCCGATCGGCCGGAAGC 184
                       *  *  ***  *    *   ** ****        *  *  *   * *    * *    

consensus_4515#0      TATACTTACTAGCAGTGTACATTATAGTAAAGAAGTGTAGCATTATCAGCTACCTACCGT 715
consensus_4515#2      TATACTTACTAGCAGTGTACATTNTAGTAAAGAAGTGTAGCATTATCAGCTNCCTACCGT 201
consensus_4515#1      TCGACCTGCTCTTGCTGGATG----GGTATGACAGCCT--CCTCATCAAGCTC-TGCCAN 237
                      *  ** * **     ** *       ***    **  *  * * ****    * * **  

consensus_4515#0      ATAGCAGAACTGATTATTATTTTTCCTCTACTTCTTTAACTGGTTTGTAAATATCATGTA 775
consensus_4515#2      ATAGCAGAACTGATTATTATTTTTCCTCTACTTCTTTAACTGGTTTGTAAATATCATGTA 261
consensus_4515#1      ATGTTCAAGACGNCCATCA-----CCTATGCTGATGTTA-TGGAGTGCCATCAACAAGTT 291
                      **     *   *   ** *     *** * **  * * * ***  **  *  * ** ** 

consensus_4515#0      TTCG-TTAAAGAGAGTAGAGAAGTTGATAACACAAAGGTTCCATTTTACCTCAGTGGAAT 834
consensus_4515#2      TTCG-TTAAAGAGNGTNGNGNTGTTGNTNACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 320
consensus_4515#1      CCTGGCCAGAAAGGCTTGCCCATGTCCTCAGGNGGTTNCAAAAAAAAANNGNNNNNNNNN 351
                         *   * * **  * *      *  * *            *    *            

consensus_4515#0      CAAATTT------------------------------------- 841
consensus_4515#2      AAAAAAAAAAA--------------------------------- 331
consensus_4515#1      NNNANANAAAGGGGGCCCCCGGGGGGCCCNTTTTTCCCTNGGGG 395
                         *