cluster # 4548

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Oryza sativa
cluster # 4548 cluster # 4548 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4548#0 length = 444 sequences # 2

consensus_4548#1 length = 410 sequences # 1

consensusID : consensus_4548#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 444
fasta sequence

                              [GTCGAATCCCGATCGATAAACCTGGGGTGCCACAGGGTGAAAATTGCTTTTCTTGCTTCTGTGTGTTGGAAATTAAAC-TATGGCTTGCAAGGGAT-TATATATAAGATC-TTTCAGAATAAATTTCTCTTT-AT-AACTCTACTGACATCGATTTTCTGCTTTATTTCTTCTCTTCATCAGTGGAGTCGAGACCTGGTGATCGAGAAGAGACTCGATCTCTTACAAGTATGGATGGACTAGCTTTTGCAAGCTTTGGACACTCTTCGTCCTTCCCAATCCC-ATCGAGCTAAC-TTGTATGATCTATGGTGATCAGCATACCAATAAATACTATCAGC-ATATGTTCCTGGACCATTTTTCGTCCGGTCTTTGCTGGTGTAGTGATGCCTGTGGCTGTTGGAATAAATGTACTTTTAAGAATAATTCCTGTCACGTGGAGGGAGTAAAAAA]

[+] EMBL BI813121             [GTCGAATCCCGATCGATAAACCTGGGGTGCCACAGGGTGAAAATTGCTTTTCTTGCTTCTGTGTGTTGGAAATTAAAC TATGGCTTGCAAGGGAT TATATATAAGATC TTTCAGAATAAATTTCTCTTT AT AACTCTACTGACATCGATTTTCTGCTTTATTTCTTCTCTTCATCAGTGGAGTCGAGACCTGGTGATCGAGAAGAGACTCGATCTCTTACAAGTATGGATGGACTAGCTTTTGCAAGCTTTGGACACTCTTCGTCCTTCCCAATCCC ATCGAGCTAAC TTGTATGATCTATGGTGATCAGCATACCAATAAATACTATCAGC ATATGTTCCTGGACCATTTTTCGTCCGGTCTTTGCTGGTGTAGTGATGCCTGTGGCTGTTGGAATAAATGTACTTTTAAGAATAATTCCTGTCACGTGGAGGGAGTAAAAAA]
[+] EMBL BI813164             [                                                        tgtTGT TGTTGGAAATTAAACGTATGGCTT CAAGGGATATATATA AAGATCTTTTCAGAATAAATTTCTCTTTGATGAACTCTACTGACATCGATTTTCTGCTTTATTTCTTCTCTTCATCAGTGGAGTCGAGACCTGGTGATCGAGAAGAGACTCGATCTCTTACAAGTATGGATGGACTAGCTTTTGCAAGCTTTGGACACTCTTCGTCCTTCCCAATCCCAATCGAGCTAACATTGTATGATCTATGGTGATCAGCATACCAATAAATACTATCAGCAATATGTTCCTGGACCATTTTTCGTCCGGTCTTTGCTGGTGTAGTGATGCCTGTGGCTGTTGGAATAAATGTACTTTTAAGAATAATTCCTGTCACGTGGAGGGAGTAAAAAA]




>consensus_4548#0
GTCGAATCCCGATCGATAAACCTGGGGTGCCACAGGGTGAAAATTGCTTTTCTTGCTTCT
GTGTGTTGGAAATTAAACTATGGCTTGCAAGGGATTATATATAAGATCTTTCAGAATAAA
TTTCTCTTTATAACTCTACTGACATCGATTTTCTGCTTTATTTCTTCTCTTCATCAGTGG
AGTCGAGACCTGGTGATCGAGAAGAGACTCGATCTCTTACAAGTATGGATGGACTAGCTT
TTGCAAGCTTTGGACACTCTTCGTCCTTCCCAATCCCATCGAGCTAACTTGTATGATCTA
TGGTGATCAGCATACCAATAAATACTATCAGCATATGTTCCTGGACCATTTTTCGTCCGG
TCTTTGCTGGTGTAGTGATGCCTGTGGCTGTTGGAATAAATGTACTTTTAAGAATAATTC
CTGTCACGTGGAGGGAGTAAAAAA

consensusID : consensus_4548#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [TGTTGGAAATTGATAACTAGTGGCTTGCCAAGGGATTATATATAAGATCTTTCAGAATAAATTTCTCTTTGATAACTGCTACTGACATGCGATGTTTGCTGCTTTGATTTCTGTCTGCTTCATCAGTGGGAGTCGAGACCTGGGTGATCGAGAAGAGACTCAGATCTCTTGACAAGTATGGATGGACTAGCTTTTGCAAGCTTTGGGACACTGCTTCGTGCCTTGCCCAAATCCCAGATCGAGCTAACATTGTGATGGATGCTATGGGTGGATCAGCATACCAATAAATACTATCAGCATATGTTCCTGGACCATTTTTCGTCCGGTCTTTGCTGGTGTAGTGATGCCTGTGGCTGTTGGAATAAATGTACTTTTAAGAATAATTCCTGTCACGTGGAGGGAGTAAAAAA]

[+] EMBL BI813212             [TGTTGGAAATTGATAACTAGTGGCTTGCCAAGGGATTATATATAAGATCTTTCAGAATAAATTTCTCTTTGATAACTGCTACTGACATGCGATGTTTGCTGCTTTGATTTCTGTCTGCTTCATCAGTGGGAGTCGAGACCTGGGTGATCGAGAAGAGACTCAGATCTCTTGACAAGTATGGATGGACTAGCTTTTGCAAGCTTTGGGACACTGCTTCGTGCCTTGCCCAAATCCCAGATCGAGCTAACATTGTGATGGATGCTATGGGTGGATCAGCATACCAATAAATACTATCAGCATATGTTCCTGGACCATTTTTCGTCCGGTCTTTGCTGGTGTAGTGATGCCTGTGGCTGTTGGAATAAATGTACTTTTAAGAATAATTCCTGTCACGTGGAGGGAGTAAAAAA]




>consensus_4548#1
TGTTGGAAATTGATAACTAGTGGCTTGCCAAGGGATTATATATAAGATCTTTCAGAATAA
ATTTCTCTTTGATAACTGCTACTGACATGCGATGTTTGCTGCTTTGATTTCTGTCTGCTT
CATCAGTGGGAGTCGAGACCTGGGTGATCGAGAAGAGACTCAGATCTCTTGACAAGTATG
GATGGACTAGCTTTTGCAAGCTTTGGGACACTGCTTCGTGCCTTGCCCAAATCCCAGATC
GAGCTAACATTGTGATGGATGCTATGGGTGGATCAGCATACCAATAAATACTATCAGCAT
ATGTTCCTGGACCATTTTTCGTCCGGTCTTTGCTGGTGTAGTGATGCCTGTGGCTGTTGG
AATAAATGTACTTTTAAGAATAATTCCTGTCACGTGGAGGGAGTAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4548#0      GTCGAATCCCGATCGATAAACCTGGGGTGCCACAGGGTGAAAATTGCTTTTCTTGCTTCT 60
consensus_4548#1      ------------------------------------------------------------
                                                                                  

consensus_4548#0      GTGTGTTGGAAATTAA--ACTA-TGGCTTGC-AAGGGATTATATATAAGATCTTTCAGAA 116
consensus_4548#1      ---TGTTGGAAATTGATAACTAGTGGCTTGCCAAGGGATTATATATAAGATCTTTCAGAA 57
                         *********** *  **** ******** ****************************

consensus_4548#0      TAAATTTCTCTTT-ATAACT-CTACTGACAT-CGATTTT--CTGCTTT-ATTTCT-TCT- 168
consensus_4548#1      TAAATTTCTCTTTGATAACTGCTACTGACATGCGATGTTTGCTGCTTTGATTTCTGTCTG 117
                      ************* ****** ********** **** **  ******* ****** *** 

consensus_4548#0      CTTCATCAGTGG-AGTCGAGACCTGG-TGATCGAGAAGAGACTC-GATCTCTT-ACAAGT 224
consensus_4548#1      CTTCATCAGTGGGAGTCGAGACCTGGGTGATCGAGAAGAGACTCAGATCTCTTGACAAGT 177
                      ************ ************* ***************** ******** ******

consensus_4548#0      ATGGATGGACTAGCTTTTGCAAGCTTTGG-ACACT-CTTCGTCCTT---CCCAATCCCA- 278
consensus_4548#1      ATGGATGGACTAGCTTTTGCAAGCTTTGGGACACTGCTTCGTGCCTTGCCCAAATCCCAG 237
                      ***************************** ***** ****** * *   ** ******* 

consensus_4548#0      -TCGAGCTAAC-TTGT-----ATGATCTATGGTGATCAGCATACCAATAAATACTATCAG 331
consensus_4548#1      ATCGAGCTAACATTGTGATGGATGCTATGGGTGGATCAGCATACCAATAAATACTATCAG 297
                       ********** ****     *** * *  *  ***************************

consensus_4548#0      CATATGTTCCTGGACCATTTTTCGTCCGGTCTTTGCTGGTGTAGTGATGCCTGTGGCTGT 391
consensus_4548#1      CATATGTTCCTGGACCATTTTTCGTCCGGTCTTTGCTGGTGTAGTGATGCCTGTGGCTGT 357
                      ************************************************************

consensus_4548#0      TGGAATAAATGTACTTTTAAGAATAATTCCTGTCACGTGGAGGGAGTAAAAAA 444
consensus_4548#1      TGGAATAAATGTACTTTTAAGAATAATTCCTGTCACGTGGAGGGAGTAAAAAA 410
                      *****************************************************