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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4565#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2173 fasta sequence
[GGAGAAAAAGCTCTTGCCTGCTCTTTTCTTGGCTCCGCTTTGTTCTTGCTCTCATCTTGCTCGTGGCGTGGTAGTCTTCGACTCGTTCTTTTTGTTGTTGTTGTTGTTGTGGTGGTGGTGGTGGTGGTAGTGCGTGAGTGAGTGAGTGAGTGGTGGCGATGTCGTCGCCGTCGTCGCCGCCGCCGGCTAACCAGACGGCGACACCGCCTCCGGCTAACCAGACGGCGGCGCCACCTCCGGCGAGCAACAACTCGTCGTCGCCGCCGGCGCCGGGCTCTTTGTCTCCGCCCTCGCTGACGCCTCCCGCAGCGCCATCGCCTCCGTCGACCACGCCCTCCTCGCCGGCGGCGGCGGCGGCGGCGTCGAGCTCGGGGCTGACGACGCCCGTGGTGGTGGGGATCGTGGTGGGCGGCCTCGTCGTGCTGCTGCTCGTCACCATCCTGCTCGTCTGCCTGTTCAAGAAGAAGAAGCGGCACCACCACCACCACCCTCCGCCGCCGCCGCCGCCGCACCTCCTGCACTACTACGGCCACCCGCCGCCGCCGCCGCCGCCCCCGCCGCCGTTCAAAGGGGATCACTATGGTGGGGTGTACCAAAATTGGCAGCAAAATGGTCCTCCACCTCCACCTGATCATGTGCTGAAGAAGGTGCCTTCGCATCCTTCCCCTCCACCACCTCCTGCTCCACTAAATGTACACAGTGGTGGTTCTGGCTCAAATTACTCCGGTGGCGACAACAGCCAACCTCTAGTGTCACCTGGTGCTGCATTGGGTTTTTCAAGGTGTACTTTCACTTATGAGGACTTGTCAGCGGCGACCGATGGATTCTCCGATGCTAATCTGCTCGGACAGGGCGGTTTTGGGTATGTTCACAAAGGAGTTCTGCCGAATGGGACAGAGGTTGCTGTGAAGCAATTGAGAGATGGGAGTGGGCAGGGAGAGCGTGAATTTCAGGCGGAGGTTGAGATTATCAGCCGGGTACATCACAAGCATCTTGTAACATTGGTTGGTTATTGCATTTCTGGAGGGAAGAGGTTGCTTGTCTATGAGTATGTTCCAAACAACACATTGGAGCTCCACTTGCATGGGAGAGGCCGACCAACCATGGAATGGCCTACAAGATTACGCATTGCTTTGGGTGCTGCGAAGGGATTGGCATATCTTCATGAAGATTGCCATCCTAAGATCATTCACCGTGACATAAAGTCAGCAAATATTCTTCTTGACGCGAGATTTGAGGCAAAGGTGGCAGATTTCGGACTTGCAAAATTGACTTCTGATAATAACACTCATGTTTCAACCAGAGTAATGGGCACATTTGGGTACCTTGCACCAGAGTATGCGTCTTCTGGCCAGCTAACTGAGAAATCAGATGTCTTTTCTTTCGGAGTAATGCTTCTTGAGCTAATAACTGGCCGCCGTCCTGTGAGATCGAACCAATCACAGATGGATGACAGCTTGGTTGATTGGGCAAGGCCTTTAATGATGCGAGCATCAGATGATGGCAATTATGATGCTTTAGTGGATCCACGGCTAGGACAGGAGTACAATGGTAACGAGATGGCGAGGATGATTGCTTGTGCAGCTGCTTGTGTACGCCATTCTGCACGCCGACGCCCACGGATGAGCCAGGTTGTTCGGGCCTTGGAAGGCGATGTGTCATTGGATGATCTGAACGAAGGTGTTCGTCCTGGCCATAGCCGATTCTTGGGATCATACAACAGCAACGAGTACGACACGGGCCATTACAATGAAGACCTGAAGAAATTCAGGAAGATGGCATTTGGCAGTGGCAATCTAGAGAGCAGCCAGCAAACGCAGCCCACCGAGTTCGTCCCGAATCGATCCGTATCAATGGGGGATGCGCGTCAAATACCGGAGACGGAGATGGAGATGGGGAGTTTGAAGAAAGATGGCGACAGCAATGGCACCAGAGACAGCCA-AGCTTCATGAGATAACCTCATCTTCCTTGTTTTTTTAGGACATTGCAACTACCGTAGCTTGTAAAGTCCCAGCCTTAGCTGAAAATTCTCATAAGTTGCTGACATTGTTTGCAACGAACCGAAATTGTTTGGTTGAGATATATATAGTTCGAGAGTTCTCGGTAGCTGCAATTCACTGCTTCTTTTCACTGAATTTTTCCTGTGCACCTTTCTGATCTGCATTACGTTTTT]
[+] EMBL AK103247 [GGAGAAAAAGCTCTTGCCTGCTCTTTTCTTGGCTCCGCTTTGTTCTTGCTCTCATCTTGCTCGTGGCGTGGTAGTCTTCGACTCGTTCTTTTTGTTGTTGTTGTTGTTGTGGTGGTGGTGGTGGTGGTAGTGCGTGAGTGAGTGAGTGAGTGGTGGCGATGTCGTCGCCGTCGTCGCCGCCGCCGGCTAACCAGACGGCGACACCGCCTCCGGCTAACCAGACGGCGGCGCCACCTCCGGCGAGCAACAACTCGTCGTCGCCGCCGGCGCCGGGCTCTTTGTCTCCGCCCTCGCTGACGCCTCCCGCAGCGCCATCGCCTCCGTCGACCACGCCCTCCTCGCCGGCGGCGGCGGCGGCGGCGTCGAGCTCGGGGCTGACGACGCCCGTGGTGGTGGGGATCGTGGTGGGCGGCCTCGTCGTGCTGCTGCTCGTCACCATCCTGCTCGTCTGCCTGTTCAAGAAGAAGAAGCGGCACCACCACCACCACCCTCCGCCGCCGCCGCCGCCGCACCTCCTGCACTACTACGGCCACCCGCCGCCGCCGCCGCCGCCCCCGCCGCCGTTCAAAGGGGATCACTATGGTGGGGTGTACCAAAATTGGCAGCAAAATGGTCCTCCACCTCCACCTGATCATGTGCTGAAGAAGGTGCCTTCGCATCCTTCCCCTCCACCACCTCCTGCTCCACTAAATGTACACAGTGGTGGTTCTGGCTCAAATTACTCCGGTGGCGACAACAGCCAACCTCTAGTGTCACCTGGTGCTGCATTGGGTTTTTCAAGGTGTACTTTCACTTATGAGGACTTGTCAGCGGCGACCGATGGATTCTCCGATGCTAATCTGCTCGGACAGGGCGGTTTTGGGTATGTTCACAAAGGAGTTCTGCCGAATGGGACAGAGGTTGCTGTGAAGCAATTGAGAGATGGGAGTGGGCAGGGAGAGCGTGAATTTCAGGCGGAGGTTGAGATTATCAGCCGGGTACATCACAAGCATCTTGTAACATTGGTTGGTTATTGCATTTCTGGAGGGAAGAGGTTGCTTGTCTATGAGTATGTTCCAAACAACACATTGGAGCTCCACTTGCATGGGAGAGGCCGACCAACCATGGAATGGCCTACAAGATTACGCATTGCTTTGGGTGCTGCGAAGGGATTGGCATATCTTCATGAAGATTGCCATCCTAAGATCATTCACCGTGACATAAAGTCAGCAAATATTCTTCTTGACGCGAGATTTGAGGCAAAGGTGGCAGATTTCGGACTTGCAAAATTGACTTCTGATAATAACACTCATGTTTCAACCAGAGTAATGGGCACATTTGGGTACCTTGCACCAGAGTATGCGTCTTCTGGCCAGCTAACTGAGAAATCAGATGTCTTTTCTTTCGGAGTAATGCTTCTTGAGCTAATAACTGGCCGCCGTCCTGTGAGATCGAACCAATCACAGATGGATGACAGCTTGGTTGATTGGGCAAGGCCTTTAATGATGCGAGCATCAGATGATGGCAATTATGATGCTTTAGTGGATCCACGGCTAGGACAGGAGTACAATGGTAACGAGATGGCGAGGATGATTGCTTGTGCAGCTGCTTGTGTACGCCATTCTGCACGCCGACGCCCACGGATGAGCCAGGTTGTTCGGGCCTTGGAAGGCGATGTGTCATTGGATGATCTGAACGAAGGTGTTCGTCCTGGCCATAGCCGATTCTTGGGATCATACAACAGCAACGAGTACGACACGGGCCATTACAATGAAGACCTGAAGAAATTCAGGAAGATGGCATTTGGCAGTGGCAATCTAGAGAGCAGCCAGCAAACGCAGCCCACCGAGTTCGTCCCGAATCGATCCGTATCAATGGGGGATGCGCGTCAAATACCGGAGACGGAGATGGAGATGGGGAGTTTGAAGAAAGATGGCGACAGCAATGGCACCAGAGACAGCCA AGCTTCATGAGATAACCTCATCTTCCTTGTTTTTTTAGGACATTGCAACTACCGTAGCTTGTAAAGTCCCAGCCTTAGCTGAAAATTCTCATAAGTTGCTGACATTGTTTGCAACGAACCGAAATTGTTTGGTTGAGATATATATAGTTCGAGAGTTCTCGGTAGCTGCAATTCACTGCTTCTTTTCACTGAATTTTTCCTGTGCACCTTTCTGATCTGCATTACGTTTTT]
[+] EMBL AU162125 [ GAACGAAGGTGTTCGTCCTGGCCATAGCCGATTCTTGGGATCATACAACAGCAACGAGTACGACACGGGCCATTACAATGAAGACCTGAAGAAATTCAGGAAGATGGCATTTGGCAGTGGCAATCTAGAGAGCAGCCAGCAAACGCAGCCCACCGAGTTCGTCCCGAATCGATCCGTATCAATGGGGGATGCGCGTCAAATACCGGAGACGGAGATGGAGATGGGGAGTTTGAAG AAGATGGCGACA CAATGGCACCAGAGACAGCCANAGCTTCATGAGATAAacc ]
consensusID : consensus_4565#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence
[TGGATGACAGCTTGGTTGATTGGGCAAGGCCTTTAATGATGCGAGCATCAGATGATGGCAATTATGATGCTTTAGTGGATCCACGGCTAGGACAGGAGTACAATGGTAACGAGATGGCGAGGATGATTGCTTGTGCAGCTGCTTGTGTACGCCATTCTGCACGCCGACGCCCACGGATGAGCCAGGTTGTTCGGGCCTTGGAAGGCGATGTGTCATTGGATGATCTGAACGAAGGTGTTCGTTCTGGCCATAGCCGATTCTTGGGATCATTCAACAGCAACGAGTGCGACACGGGCCATTCCAATGAAGGCCTGAAGAAATTCAGGAAGATGGCATTTGGCAGTGGCAATCTAGAGAGCAGCCAGCAAACGCAGCCCACCGAGTTCGTCCCGAATCGATCCGTATCAATGGGGGATGGGCGTCAAATACCGGAGACGGAGATGGAGATGGGGAGTTTGAAGAAAGATGGCGACAGCAATGGCACCAGAGACAGCCAAGCTTCATGAGATAACCTCATTTTCCTTGTTTTTTTAGGACATTGCAACTACCGTAGCTTGTAAAGTCCCAGCCTTAGCTGAAAATTCTCATAAGTTGCTGACATTGTTTGCAACGAACCGAAATTGTTTGGTTGAGATATATATAGTTCGAGAGTTCTCGGTAGGTGCAATTCACTGCTTCTTTTCTCTGAAAAAAAAAAAAAAGG]
[-] EMBL CB682009 [TGGATGACAGCTTGGTTGATTGGGCAAGGCCTTTAATGATGCGAGCATCAGATGATGGCAATTATGATGCTTTAGTGGATCCACGGCTAGGACAGGAGTACAATGGTAACGAGATGGCGAGGATGATTGCTTGTGCAGCTGCTTGTGTACGCCATTCTGCACGCCGACGCCCACGGATGAGCCAGGTTGTTCGGGCCTTGGAAGGCGATGTGTCATTGGATGATCTGAACGAAGGTGTTCGTTCTGGCCATAGCCGATTCTTGGGATCATTCAACAGCAACGAGTGCGACACGGGCCATTCCAATGAAGGCCTGAAGAAATTCAGGAAGATGGCATTTGGCAGTGGCAATCTAGAGAGCAGCCAGCAAACGCAGCCCACCGAGTTCGTCCCGAATCGATCCGTATCAATGGGGGATGGGCGTCAAATACCGGAGACGGAGATGGAGATGGGGAGTTTGAAGAAAGATGGCGACAGCAATGGCACCAGAGACAGCCAAGCTTCATGAGATAACCTCATTTTCCTTGTTTTTTTAGGACATTGCAACTACCGTAGCTTGTAAAGTCCCAGCCTTAGCTGAAAATTCTCATAAGTTGCTGACATTGTTTGCAACGAACCGAAATTGTTTGGTTGAGATATATATAGTTCGAGAGTTCTCGGTAGGTGCAATTCACTGCTTCTTTTCTCTGAAAAAAAAAAAAAAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4565#0 GGAGAAAAAGCTCTTGCCTGCTCTTTTCTTGGCTCCGCTTTGTTCTTGCTCTCATCTTGC 60
consensus_4565#1 ------------------------------------------------------------
consensus_4565#0 TCGTGGCGTGGTAGTCTTCGACTCGTTCTTTTTGTTGTTGTTGTTGTTGTGGTGGTGGTG 120
consensus_4565#1 ------------------------------------------------------------
consensus_4565#0 GTGGTGGTAGTGCGTGAGTGAGTGAGTGAGTGGTGGCGATGTCGTCGCCGTCGTCGCCGC 180
consensus_4565#1 ------------------------------------------------------------
consensus_4565#0 CGCCGGCTAACCAGACGGCGACACCGCCTCCGGCTAACCAGACGGCGGCGCCACCTCCGG 240
consensus_4565#1 ------------------------------------------------------------
consensus_4565#0 CGAGCAACAACTCGTCGTCGCCGCCGGCGCCGGGCTCTTTGTCTCCGCCCTCGCTGACGC 300
consensus_4565#1 ------------------------------------------------------------
consensus_4565#0 CTCCCGCAGCGCCATCGCCTCCGTCGACCACGCCCTCCTCGCCGGCGGCGGCGGCGGCGG 360
consensus_4565#1 ------------------------------------------------------------
consensus_4565#0 CGTCGAGCTCGGGGCTGACGACGCCCGTGGTGGTGGGGATCGTGGTGGGCGGCCTCGTCG 420
consensus_4565#1 ------------------------------------------------------------
consensus_4565#0 TGCTGCTGCTCGTCACCATCCTGCTCGTCTGCCTGTTCAAGAAGAAGAAGCGGCACCACC 480
consensus_4565#1 ------------------------------------------------------------
consensus_4565#0 ACCACCACCCTCCGCCGCCGCCGCCGCCGCACCTCCTGCACTACTACGGCCACCCGCCGC 540
consensus_4565#1 ------------------------------------------------------------
consensus_4565#0 CGCCGCCGCCGCCCCCGCCGCCGTTCAAAGGGGATCACTATGGTGGGGTGTACCAAAATT 600
consensus_4565#1 ------------------------------------------------------------
consensus_4565#0 GGCAGCAAAATGGTCCTCCACCTCCACCTGATCATGTGCTGAAGAAGGTGCCTTCGCATC 660
consensus_4565#1 ------------------------------------------------------------
consensus_4565#0 CTTCCCCTCCACCACCTCCTGCTCCACTAAATGTACACAGTGGTGGTTCTGGCTCAAATT 720
consensus_4565#1 ------------------------------------------------------------
consensus_4565#0 ACTCCGGTGGCGACAACAGCCAACCTCTAGTGTCACCTGGTGCTGCATTGGGTTTTTCAA 780
consensus_4565#1 ------------------------------------------------------------
consensus_4565#0 GGTGTACTTTCACTTATGAGGACTTGTCAGCGGCGACCGATGGATTCTCCGATGCTAATC 840
consensus_4565#1 ------------------------------------------------------------
consensus_4565#0 TGCTCGGACAGGGCGGTTTTGGGTATGTTCACAAAGGAGTTCTGCCGAATGGGACAGAGG 900
consensus_4565#1 ------------------------------------------------------------
consensus_4565#0 TTGCTGTGAAGCAATTGAGAGATGGGAGTGGGCAGGGAGAGCGTGAATTTCAGGCGGAGG 960
consensus_4565#1 ------------------------------------------------------------
consensus_4565#0 TTGAGATTATCAGCCGGGTACATCACAAGCATCTTGTAACATTGGTTGGTTATTGCATTT 1020
consensus_4565#1 ------------------------------------------------------------
consensus_4565#0 CTGGAGGGAAGAGGTTGCTTGTCTATGAGTATGTTCCAAACAACACATTGGAGCTCCACT 1080
consensus_4565#1 ------------------------------------------------------------
consensus_4565#0 TGCATGGGAGAGGCCGACCAACCATGGAATGGCCTACAAGATTACGCATTGCTTTGGGTG 1140
consensus_4565#1 ------------------------------------------------------------
consensus_4565#0 CTGCGAAGGGATTGGCATATCTTCATGAAGATTGCCATCCTAAGATCATTCACCGTGACA 1200
consensus_4565#1 ------------------------------------------------------------
consensus_4565#0 TAAAGTCAGCAAATATTCTTCTTGACGCGAGATTTGAGGCAAAGGTGGCAGATTTCGGAC 1260
consensus_4565#1 ------------------------------------------------------------
consensus_4565#0 TTGCAAAATTGACTTCTGATAATAACACTCATGTTTCAACCAGAGTAATGGGCACATTTG 1320
consensus_4565#1 ------------------------------------------------------------
consensus_4565#0 GGTACCTTGCACCAGAGTATGCGTCTTCTGGCCAGCTAACTGAGAAATCAGATGTCTTTT 1380
consensus_4565#1 ------------------------------------------------------------
consensus_4565#0 CTTTCGGAGTAATGCTTCTTGAGCTAATAACTGGCCGCCGTCCTGTGAGATCGAACCAAT 1440
consensus_4565#1 ------------------------------------------------------------
consensus_4565#0 CACAGATGGATGACAGCTTGGTTGATTGGGCAAGGCCTTTAATGATGCGAGCATCAGATG 1500
consensus_4565#1 ------TGGATGACAGCTTGGTTGATTGGGCAAGGCCTTTAATGATGCGAGCATCAGATG 54
******************************************************
consensus_4565#0 ATGGCAATTATGATGCTTTAGTGGATCCACGGCTAGGACAGGAGTACAATGGTAACGAGA 1560
consensus_4565#1 ATGGCAATTATGATGCTTTAGTGGATCCACGGCTAGGACAGGAGTACAATGGTAACGAGA 114
************************************************************
consensus_4565#0 TGGCGAGGATGATTGCTTGTGCAGCTGCTTGTGTACGCCATTCTGCACGCCGACGCCCAC 1620
consensus_4565#1 TGGCGAGGATGATTGCTTGTGCAGCTGCTTGTGTACGCCATTCTGCACGCCGACGCCCAC 174
************************************************************
consensus_4565#0 GGATGAGCCAGGTTGTTCGGGCCTTGGAAGGCGATGTGTCATTGGATGATCTGAACGAAG 1680
consensus_4565#1 GGATGAGCCAGGTTGTTCGGGCCTTGGAAGGCGATGTGTCATTGGATGATCTGAACGAAG 234
************************************************************
consensus_4565#0 GTGTTCGTCCTGGCCATAGCCGATTCTTGGGATCATACAACAGCAACGAGTACGACACGG 1740
consensus_4565#1 GTGTTCGTTCTGGCCATAGCCGATTCTTGGGATCATTCAACAGCAACGAGTGCGACACGG 294
******** *************************** ************** ********
consensus_4565#0 GCCATTACAATGAAGACCTGAAGAAATTCAGGAAGATGGCATTTGGCAGTGGCAATCTAG 1800
consensus_4565#1 GCCATTCCAATGAAGGCCTGAAGAAATTCAGGAAGATGGCATTTGGCAGTGGCAATCTAG 354
****** ******** ********************************************
consensus_4565#0 AGAGCAGCCAGCAAACGCAGCCCACCGAGTTCGTCCCGAATCGATCCGTATCAATGGGGG 1860
consensus_4565#1 AGAGCAGCCAGCAAACGCAGCCCACCGAGTTCGTCCCGAATCGATCCGTATCAATGGGGG 414
************************************************************
consensus_4565#0 ATGCGCGTCAAATACCGGAGACGGAGATGGAGATGGGGAGTTTGAAGAAAGATGGCGACA 1920
consensus_4565#1 ATGGGCGTCAAATACCGGAGACGGAGATGGAGATGGGGAGTTTGAAGAAAGATGGCGACA 474
*** ********************************************************
consensus_4565#0 GCAATGGCACCAGAGACAGCCAAGCTTCATGAGATAACCTCATCTTCCTTGTTTTTTTAG 1980
consensus_4565#1 GCAATGGCACCAGAGACAGCCAAGCTTCATGAGATAACCTCATTTTCCTTGTTTTTTTAG 534
******************************************* ****************
consensus_4565#0 GACATTGCAACTACCGTAGCTTGTAAAGTCCCAGCCTTAGCTGAAAATTCTCATAAGTTG 2040
consensus_4565#1 GACATTGCAACTACCGTAGCTTGTAAAGTCCCAGCCTTAGCTGAAAATTCTCATAAGTTG 594
************************************************************
consensus_4565#0 CTGACATTGTTTGCAACGAACCGAAATTGTTTGGTTGAGATATATATAGTTCGAGAGTTC 2100
consensus_4565#1 CTGACATTGTTTGCAACGAACCGAAATTGTTTGGTTGAGATATATATAGTTCGAGAGTTC 654
************************************************************
consensus_4565#0 TCGGTAGCTGCAATTCACTGCTTCTTTTCACTGAATTTTTCCTGTGCACCTTTCTGATCT 2160
consensus_4565#1 TCGGTAGGTGCAATTCACTGCTTCTTTTCTCTGAAAAAAAAAAAAAAGG----------- 703
******* ********************* *****
consensus_4565#0 GCATTACGTTTTT 2173
consensus_4565#1 -------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||