|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4586#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1132 fasta sequence
[TCTCTTTGGGTATTTCAGCCAGAAGACTGGCCTCCTTGTGCATCTTGAGGATTCTCACCTCACCAGGATTCAGTCCACCACCGGAGGGGACGCAGTTTACTGGGAGACCACCATCAATTCGTTCATTGAGGACTACCGCCCGGTGGAGGGTATAATGGTTGCGCACGCTGGTCGCTCCGCTGTGACCCTCTTCCGTTTCGGAGAGGTTGCCATGAGCCACACCAAGACTCGCATGGAGGAGGCATGGAGCATCGAGGAGGTCGCGTTCAATGTCCCTGGCCTCTCCATCGATTGCTTCATCCCGCCCACCGACATCAAGTCTGGATCCATCAGCGAGACCGTCGAGCTTCCTCATGGCGAGAAGAGCAAGGTTGGTCTTCTCCAATGCCATAGTGCTAAGGTGGCCGCGTTGGAGAAGGCAGACGACAACGTCGCGTGGAGCGGAGCACTGCAGCGAGATTTCAAGTGATTTGCTGTCTGTTCATAGTTGCTTCTTGCAGTGCCAGTGCTACTGACTCATTTTGATGATTGTAGGGTAGCAAGAAAGAGCCAAGGGAGGATGATTTGGAGCTTTGCAAATTCCAAATGTCCTGTAAATAGGAAGCTTAAGGAATTCACATGGTCTTCCATATCCCTGAGGAGGCCTATTGTGAAGAACCCTTACCTATCTTATTCAGATATATGGTAGTAGGTAGTTGTTAGTAACTTCTGGCGTTTTTTTTTGTCGGTGCCTTGTGGAAGAACCAGGAGGGGTGTTTCTCATCCTGCACCCAACCACATGGTAAGGGATCATGGTGGTGGTGCTGTTCTTTCTCTTATAGCGATACTAATTTATCGGAGCCCAGCGAGGAAGAAGGGTTTCTTCTCTGGCAATTGAGAGTGATTTTATTCTGATTTTAGCAGTCCAGTGTGCTTTTGGTTGGTGATAGTCTCCGGTCAAAACTAACTTTAGGTGAAAGATTAAGAGTTCTGAATTGCTGTTGCTCTTTGTTTAGGGTTATCATGATGGGTCTCTGGTTGTTTTTTTCCCTGTCCTTCCTTCACATCTCTCTTTATTTAGTATGAGATGGTGGTTGTATTCTACAGAAGTTGATGTAAGCCAGAACTTCTAATGAATATCATGGAATGAATT]
[+] EMBL AK059252 [TCTCTTTGGGTATTTCAGCCAGAAGACTGGCCTCCTTGTGCATCTTGAGGATTCTCACCTCACCAGGATTCAGTCCACCACCGGAGGGGACGCAGTTTACTGGGAGACCACCATCAATTCGTTCATTGAGGACTACCGCCCGGTGGAGGGTATAATGGTTGCGCACGCTGGTCGCTCCGCTGTGACCCTCTTCCGTTTCGGAGAGGTTGCCATGAGCCACACCAAGACTCGCATGGAGGAGGCATGGAGCATCGAGGAGGTCGCGTTCAATGTCCCTGGCCTCTCCATCGATTGCTTCATCCCGCCCACCGACATCAAGTCTGGATCCATCAGCGAGACCGTCGAGCTTCCTCATGGCGAGAAGAGCAAGGTTGGTCTTCTCCAATGCCATAGTGCTAAGGTGGCCGCGTTGGAGAAGGCAGACGACAACGTCGCGTGGAGCGGAGCACTGCAGCGAGATTTCAAGTGATTTGCTGTCTGTTCATAGTTGCTTCTTGCAGTGCCAGTGCTACTGACTCATTTTGATGATTGTAGGGTAGCAAGAAAGAGCCAAGGGAGGATGATTTGGAGCTTTGCAAATTCCAAATGTCCTGTAAATAGGAAGCTTAAGGAATTCACATGGTCTTCCATATCCCTGAGGAGGCCTATTGTGAAGAACCCTTACCTATCTTATTCAGATATATGGTAGTAGGTAGTTGTTAGTAACTTCTGGCGTTTTTTTTTGTCGGTGCCTTGTGGAAGAACCAGGAGGGGTGTTTCTCATCCTGCACCCAACCACATGGTAAGGGATCATGGTGGTGGTGCTGTTCTTTCTCTTATAGCGATACTAATTTATCGGAGCCCAGCGAGGAAGAAGGGTTTCTTCTCTGGCAATTGAGAGTGATTTTATTCTGATTTTAGCAGTCCAGTGTGCTTTTGGTTGGTGATAGTCTCCGGTCAAAACTAACTTTAGGTGAAAGATTAAGAGTTCTGAATTGCTGTTGCTCTTTGTTTAGGGTTATCATGATGGGTCTCTGGTTGTTTTTTTCCCTGTCCTTCCTTCACATCTCTCTTTATTTAGTATGAGATGGTGGTTGTATTCTACAGAAGTTGATGTAAGCCAGAACTTCTAATGAATATCATGGAAT ]
[+] EMBL CA764044 [ GGGGGGATGATTTGGAGCTTTGCAAATTCCAAATGTCCTGTAAATAGGAAGCTTAAGGAATTCACATGGTCTTCCATATCCCTGAGGAGGCCTATTGTGAAGAACCCTTACCTATCTTATTCAGATATATGGTAGTAGGTAGTTGTTAGTAACTTCTGGCGTTTTTTTTTGTCGGTGCCTTGTGGAAGAACCAGGAGGGGTGTTTCTCATCCTGCACCCAACCACATGGTAAGGGATCATGGTGGTGGTGCTGTTCTTTCTCTTATAGCGATACTAATTTATCGGAGCCCAGCGAGGAAGAAGGGTTTCTTCTCTGGCAATTGAGAGTGATTTTATTCTGATTTTAGCAGTCCAGTGTGCTTTTGGTTGGTGATAGTCTCCGGTCAAAACTAACTTTAGGTGAAAGATTAAGAGTTCTGAATTGCTGTTGCTCTTTGTTTAGGGNTATCATGATGGGTCTCTGGTTGTTTTTTTCCCTGTCCTTCCTTCACATCTCTCTTTATTTAGTATGAGATGGTGGTTGTATTCTACAGAAGTTGATGTAAGCCAGAACTTCTAATGAATATCATGGNATGAATT]
consensusID : consensus_4586#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence
[ACCGGACATCAAAGTCTGGNACCATCAACNAAGACCGCGAAGCTTCCCTCATGGCNAAGAAGAAGCAAGGTNGGTCCTTCCCCCAAATGCCCATAGTGCCTAAGGTGGCCNCCGTTGGAAGAAAGGCAAGACGACAACGTCGCCGTGGAGCGGAAGCACTGCAAGCGAGATTTCAAAGTGATTTGCTGTCTGTTCCATAGTTGCTTCTTGCAAGTGCCAGTGCTACTGACTCATTTTGATGGTTGTAGGGTAGCAAGAAAGAGCCAAGGGAGGATGATTTGGAGCTTTGCAAATTCCAAATGTCCTGTAAATAGGAAGCTTAAGGAATTCACATGGTCTTCCATATCCCTGAGGAGGCCTATTGTGAAGAACCCTTACCTATCTTATTCAGATATATGGTAGTAGGTAGTTGTTAGTAACAACTACCTACTACC]
[-] EMBL C73915 [ACCGGACATCAAAGTCTGGNACCATCAACNAAGACCGCGAAGCTTCCCTCATGGCNAAGAAGAAGCAAGGTNGGTCCTTCCCCCAAATGCCCATAGTGCCTAAGGTGGCCNCCGTTGGAAGAAAGGCAAGACGACAACGTCGCCGTGGAGCGGAAGCACTGCAAGCGAGATTTCAAAGTGATTTGCTGTCTGTTCCATAGTTGCTTCTTGCAAGTGCCAGTGCTACTGACTCATTTTGATGGTTGTAGGGTAGCAAGAAAGAGCCAAGGGAGGATGATTTGGAGCTTTGCAAATTCCAAATGTCCTGTAAATAGGAAGCTTAAGGAATTCACATGGTCTTCCATATCCCTGAGGAGGCCTATTGTGAAGAACCCTTACCTATCTTATTCAGATATATGGTAGTAGGTAGTTGTTAGTAACAACTACCTACTACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4586#0 TCTCTTTGGGTATTTCAGCCAGAAGACTGGCCTCCTTGTGCATCTTGAGGATTCTCACCT 60
consensus_4586#1 ------------------------------------------------------------
consensus_4586#0 CACCAGGATTCAGTCCACCACCGGAGGGGACGCAGTTTACTGGGAGACCACCATCAATTC 120
consensus_4586#1 ------------------------------------------------------------
consensus_4586#0 GTTCATTGAGGACTACCGCCCGGTGGAGGGTATAATGGTTGCGCACGCTGGTCGCTCCGC 180
consensus_4586#1 ------------------------------------------------------------
consensus_4586#0 TGTGACCCTCTTCCGTTTCGGAGAGGTTGCCATGAGCCACACCAAGACTCGCATGGAGGA 240
consensus_4586#1 ------------------------------------------------------------
consensus_4586#0 GGCATGGAGCATCGAGGAGGTCGCGTTCAATGTCCCTGGCCTCTCCATCGATTGCTTCAT 300
consensus_4586#1 ------------------------------------------------------------
consensus_4586#0 CCCGCCCACCG-ACATCAA-GTCTGGATCCATCAGCGA-GACCGTCGAGCTTCC-TCATG 356
consensus_4586#1 -------ACCGGACATCAAAGTCTGGNACCATCAACNAAGACCGCGAAGCTTCCCTCATG 53
**** ******* ****** ****** * * ***** ******* *****
consensus_4586#0 GCGAGAAG--AGCAAGGTTGGTCTTCTCC---AATGCC-ATAGTGC-TAAGGTGGCCGC- 408
consensus_4586#1 GCNAAGAAGAAGCAAGGTNGGTCCTTCCCCCAAATGCCCATAGTGCCTAAGGTGGCCNCC 113
** * * ******** **** * ** ****** ******* ********** *
consensus_4586#0 GTTGGAG--AAGGCA-GACGACAACGTCGC-GTGGAGCGGA-GCACTGCA-GCGAGATTT 462
consensus_4586#1 GTTGGAAGAAAGGCAAGACGACAACGTCGCCGTGGAGCGGAAGCACTGCAAGCGAGATTT 173
****** ****** ************** ********** ******** *********
consensus_4586#0 CAA-GTGATTTGCTGTCTGTTC-ATAGTTGCTTCTTGCA-GTGCCAGTGCTACTGACTCA 519
consensus_4586#1 CAAAGTGATTTGCTGTCTGTTCCATAGTTGCTTCTTGCAAGTGCCAGTGCTACTGACTCA 233
*** ****************** **************** ********************
consensus_4586#0 TTTTGATGATTGTAGGGTAGCAAGAAAGAGCCAAGGGAGGATGATTTGGAGCTTTGCAAA 579
consensus_4586#1 TTTTGATGGTTGTAGGGTAGCAAGAAAGAGCCAAGGGAGGATGATTTGGAGCTTTGCAAA 293
******** ***************************************************
consensus_4586#0 TTCCAAATGTCCTGTAAATAGGAAGCTTAAGGAATTCACATGGTCTTCCATATCCCTGAG 639
consensus_4586#1 TTCCAAATGTCCTGTAAATAGGAAGCTTAAGGAATTCACATGGTCTTCCATATCCCTGAG 353
************************************************************
consensus_4586#0 GAGGCCTATTGTGAAGAACCCTTACCTATCTTATTCAGATATATGGTAGTAGGTAGTTGT 699
consensus_4586#1 GAGGCCTATTGTGAAGAACCCTTACCTATCTTATTCAGATATATGGTAGTAGGTAGTTGT 413
************************************************************
consensus_4586#0 TAGTAACTTCTGGCGTTTTTTTTTGTCGGTGCCTTGTGGAAGAACCAGGAGGGGTGTTTC 759
consensus_4586#1 TAGTAACAACTACCTACTACC--------------------------------------- 434
******* ** * *
consensus_4586#0 TCATCCTGCACCCAACCACATGGTAAGGGATCATGGTGGTGGTGCTGTTCTTTCTCTTAT 819
consensus_4586#1 ------------------------------------------------------------
consensus_4586#0 AGCGATACTAATTTATCGGAGCCCAGCGAGGAAGAAGGGTTTCTTCTCTGGCAATTGAGA 879
consensus_4586#1 ------------------------------------------------------------
consensus_4586#0 GTGATTTTATTCTGATTTTAGCAGTCCAGTGTGCTTTTGGTTGGTGATAGTCTCCGGTCA 939
consensus_4586#1 ------------------------------------------------------------
consensus_4586#0 AAACTAACTTTAGGTGAAAGATTAAGAGTTCTGAATTGCTGTTGCTCTTTGTTTAGGGTT 999
consensus_4586#1 ------------------------------------------------------------
consensus_4586#0 ATCATGATGGGTCTCTGGTTGTTTTTTTCCCTGTCCTTCCTTCACATCTCTCTTTATTTA 1059
consensus_4586#1 ------------------------------------------------------------
consensus_4586#0 GTATGAGATGGTGGTTGTATTCTACAGAAGTTGATGTAAGCCAGAACTTCTAATGAATAT 1119
consensus_4586#1 ------------------------------------------------------------
consensus_4586#0 CATGGAATGAATT 1132
consensus_4586#1 -------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||