cluster # 4587

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Oryza sativa
cluster # 4587 cluster # 4587 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4587#0 length = 236 sequences # 1

consensus_4587#1 length = 186 sequences # 2

consensusID : consensus_4587#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence

                              [GTGTGCTGACCTGGGAGATGCACAGGCTGCACACAGGAGATGGAGTTGCCTGCAGCACAGCACAGCACAGATGATGCAATGCAACCCAGCACAATTGACTGGCACAGTTGAATGTGTAATGTGATGTGGTTGATGTGATGTGAGCTGATGTGTGCACCACACACTGTGCAGTCTGCTGGGGGGGTTGCTAATCCCATTGCGTTTTAATCTAGATCTAGCTTTTGTGAGTGAGAGAG]

[+] EMBL BI797487             [GTGTGCTGACCTGGGAGATGCACAGGCTGCACACAGGAGATGGAGTTGCCTGCAGCACAGCACAGCACAGATGATGCAATGCAACCCAGCACAATTGACTGGCACAGTTGAATGTGTAATGTGATGTGGTTGATGTGATGTGAGCTGATGTGTGCACCACACACTGTGCAGTCTGCTGGGGGGGTTGCTAATCCCATTGCGTTTTAATCTAGATCTAGCTTTTGTGAGTGAGAGAG]




>consensus_4587#0
GTGTGCTGACCTGGGAGATGCACAGGCTGCACACAGGAGATGGAGTTGCCTGCAGCACAG
CACAGCACAGATGATGCAATGCAACCCAGCACAATTGACTGGCACAGTTGAATGTGTAAT
GTGATGTGGTTGATGTGATGTGAGCTGATGTGTGCACCACACACTGTGCAGTCTGCTGGG
GGGGTTGCTAATCCCATTGCGTTTTAATCTAGATCTAGCTTTTGTGAGTGAGAGAG

consensusID : consensus_4587#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 186
fasta sequence

                              [TTCCCCCCTTCGCTCTGGGGTTCGCTAATCCCATTGCGTTTTAATCTAGATCTAGCTTTTGTGAGTGAGAGAGAGACTGTGCTTGCCATTGTATAATCCTCCCCCACCGGATTCTTTTCTTTAATCTACTTTCGGACATTATTAGTAGAGATTTTGTCATCCGATTGCTCCTGCCTGCTTGATCTG]

[+] EMBL BI892455             [TTCCCCCCTTCGCTCTGGGGTTCGCTAATCCCATTGCGTTTTAATCTAGATCTAGCTTTTGTGAGTGAGAGAGAGACTGTGCTTGCCATTGTATAATCCTCCCCCACCGGATTCTTTTCTTTAATCTACTTTCGGACATTATTAGTAGAGATTTTGTCATCCGATTGCTCCTGCCTGCTTGATCTG]
[+] EMBL BI795060             [TTCCCCCCTTCGCTCTGGGGTT GCTAATCCCATTGCGTTTTAATCTAGATCTAGCTTTTGTGAGTGAGAGAGAGACTGTGCTTGCCATTGTATAATCCTCCCCCACCGGATTCTTTTCTTTAATCTACTTTCGGACATTATTAGTAaaaaaa                                 ]




>consensus_4587#1
TTCCCCCCTTCGCTCTGGGGTTCGCTAATCCCATTGCGTTTTAATCTAGATCTAGCTTTT
GTGAGTGAGAGAGAGACTGTGCTTGCCATTGTATAATCCTCCCCCACCGGATTCTTTTCT
TTAATCTACTTTCGGACATTATTAGTAGAGATTTTGTCATCCGATTGCTCCTGCCTGCTT
GATCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4587#0      GTGTGCTGACCTGGGAGATGCACAGGCTGCACACAGGAGATGGAGTTGCCTGCAGCACAG 60
consensus_4587#1      ---------------------------------------------TTCCCCCCTTCGCTC 15
                                                                   ** **  *  * *  

consensus_4587#0      CACAGCACAGATGATGCAATGCAACCCAGCACAATTGACTGGCACAGTTGAATGTGTAAT 120
consensus_4587#1      TGGGGTTCGCTAATCCCATTGCGTTTTAATCTAGAT--CTAGCTTTTGTGAGTGAGAGAG 73
                          *  *        ** ***     *    *  *  ** **     *** ** *  * 

consensus_4587#0      GTGATGTGGTTGATGTGATGTGAGCTGATGTGTGCACCACACACTGTGCAGTCTGCTGGG 180
consensus_4587#1      AGACTGTGCTTGCCATTGTATAATCCTCCCCCACCGGATTCTTTTCTTTAATCTACTTTC 133
                          **** ***   *  * * * *         *         * *  * *** **   

consensus_4587#0      GGG-GTTGCTAATCCC-ATTGCGTTTTAATCTAGATCTAGCTTTTGTGAGTGAGAGAG 236
consensus_4587#1      GGACATTATTAGTAGAGATTTTGTCATCCGATTGCTCCTGCCTGCTTGATCTG----- 186
                      **   **  ** *    ***  **  *    * * **  ** *   ***