cluster # 4597

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Oryza sativa
cluster # 4597 cluster # 4597 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4597#0 length = 688 sequences # 1

consensus_4597#1 length = 370 sequences # 2

consensusID : consensus_4597#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 688
fasta sequence

                              [GGTGCCACGACCACCCCGCGGACAAGGCCCGGGACAAGGCGAAGGGGGCGCACAAGCTCCGGGCCTGCGACGTCGCGCTCAACCACCGCCTCGTGTCCTGGCGCGTCGTCGACAGCGCCGGGGCGTGGGCGGCCGGCACGGGAATCCCGGACTACAAGGGCGCCTCCGCGTCCGCCGTGCTGGCCTACCTCGCCGGGGGGAGCAGCTACCACGAGGACGACGACGACGGGGGCGCCCCCGCCCTGGAAGCCGCCCCGCCGGCCAGCGGCAGCGGCCTCTCTGACCTGTACGACCTCATCGTCGGCCACCACGCCGCCGCCCGCCAAGAGCCGGACACGGCGCGCGCCACTGACATAGAAGTAGCAAACAAGGACGGAATCGAGGAGGAGCCGGATCAAGATGCAGCAGCAGCGTCTGGTGAAGAGGAGGAAGAAGACGACATGGGCTTCTTCATGGTGGGGATCACAATTGCGCTGGAGTTCTCAGATGGGGAGGAAGACTGGATCGTGGTGGAGGAGATCTGATCCGATCTCGGTCAGTTCGATCAAGAATTGCAAAATAAAGAATGCAAGAGAGGTCATTCATCCAATCCAATCATNCATGTGTTGGCTCTTGNATGATCCTTGTCTCTTCCATCTGGTTGGTGGTGTTCATATTATTGGTTGGTTCCAATCGAATGGGGTCCATT]

[+] EMBL AU162219             [GGTGCCACGACCACCCCGCGGACAAGGCCCGGGACAAGGCGAAGGGGGCGCACAAGCTCCGGGCCTGCGACGTCGCGCTCAACCACCGCCTCGTGTCCTGGCGCGTCGTCGACAGCGCCGGGGCGTGGGCGGCCGGCACGGGAATCCCGGACTACAAGGGCGCCTCCGCGTCCGCCGTGCTGGCCTACCTCGCCGGGGGGAGCAGCTACCACGAGGACGACGACGACGGGGGCGCCCCCGCCCTGGAAGCCGCCCCGCCGGCCAGCGGCAGCGGCCTCTCTGACCTGTACGACCTCATCGTCGGCCACCACGCCGCCGCCCGCCAAGAGCCGGACACGGCGCGCGCCACTGACATAGAAGTAGCAAACAAGGACGGAATCGAGGAGGAGCCGGATCAAGATGCAGCAGCAGCGTCTGGTGAAGAGGAGGAAGAAGACGACATGGGCTTCTTCATGGTGGGGATCACAATTGCGCTGGAGTTCTCAGATGGGGAGGAAGACTGGATCGTGGTGGAGGAGATCTGATCCGATCTCGGTCAGTTCGATCAAGAATTGCAAAATAAAGAATGCAAGAGAGGTCATTCATCCAATCCAATCATNCATGTGTTGGCTCTTGNATGATCCTTGTCTCTTCCATCTGGTTGGTGGTGTTCATATTATTGGTTGGTTCCAATCGAATGGGGTCCATT]




>consensus_4597#0
GGTGCCACGACCACCCCGCGGACAAGGCCCGGGACAAGGCGAAGGGGGCGCACAAGCTCC
GGGCCTGCGACGTCGCGCTCAACCACCGCCTCGTGTCCTGGCGCGTCGTCGACAGCGCCG
GGGCGTGGGCGGCCGGCACGGGAATCCCGGACTACAAGGGCGCCTCCGCGTCCGCCGTGC
TGGCCTACCTCGCCGGGGGGAGCAGCTACCACGAGGACGACGACGACGGGGGCGCCCCCG
CCCTGGAAGCCGCCCCGCCGGCCAGCGGCAGCGGCCTCTCTGACCTGTACGACCTCATCG
TCGGCCACCACGCCGCCGCCCGCCAAGAGCCGGACACGGCGCGCGCCACTGACATAGAAG
TAGCAAACAAGGACGGAATCGAGGAGGAGCCGGATCAAGATGCAGCAGCAGCGTCTGGTG
AAGAGGAGGAAGAAGACGACATGGGCTTCTTCATGGTGGGGATCACAATTGCGCTGGAGT
TCTCAGATGGGGAGGAAGACTGGATCGTGGTGGAGGAGATCTGATCCGATCTCGGTCAGT
TCGATCAAGAATTGCAAAATAAAGAATGCAAGAGAGGTCATTCATCCAATCCAATCATNC
ATGTGTTGGCTCTTGNATGATCCTTGTCTCTTCCATCTGGTTGGTGGTGTTCATATTATT
GGTTGGTTCCAATCGAATGGGGTCCATT

consensusID : consensus_4597#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 370
fasta sequence

                              [TTCCTTCATGGTGGGGATCACAAATTGCGCTGGAGTTCTCAGATGGGGAGGAAGACTGGATCGTGGTGGAGNAGATCTGATCCGATCTCGGTCAGTTCGATCAAGAATTGCAAAATAAAGAATGCAANAGAGGTCATCCATCCAATCCAATCATCCATGTGTTGGCTCTGTATGATCCTGTCTCTCCCATCTGCTGGTGGTGTTCATATTATTGTTGCTCCAGTCGATTGTGTCCATGTGTATATGGTGACTTTTAATCATCGCTTAATTTAGTTGTGGTCAATTAATTGGTCAAGGATTATGATGCATGATTCAAAACCTGAATTTATCTCATGTGTGAATAAAATGGAGAAGGGAACTATTCTTCTTC]

[+] EMBL C99397               [TTCCTTCATGGTGGGGATCACAAATTGCGCTGGAGTTCTCAGATGGGGAGGAAGACTGGATCGTGGTGGAGNAGATCTGATCCGATCTCGGTCAGTTCGATCAAGAATTGCAAAATAAAGAATGCAANAGAGGTCATCCATCCAATCCAATCATCCATGTGTTGGCTCTGTATGATCCTGTCTCTCCCATCTGCTGGTGGTGTTCATATTATTGTTGCTCCAGTCGATTGTGTCCATGTGTATATGGTGACTTTTAATCATCGCTTAATTTAGTTGTGGTCAATTAATTGGTCAA                                                                           ]
[+] EMBL AK059372             [                                                                               ATCCGATCTCGGTCAGTTCGATCAAGAATTGCAAAATAAAGAATGCAAGAGAGGTCATCCATCCAATCCAATCATCCATGTGTTGGCTCTGTATGATCCTGTCTCTCCCATCTGCTGGTGGTGTTCATATTATTGTTGCTCCAGTCGATTGTGTCCATGTGTATATGGTGACTTTTAATCATCGCTTAATTTAGTTGTGGTCAATTAATTGGTCATGGATTATGATGCATGATTCAAAACCTGAATTTATCTCATGTGTGAATAAAATGGAGAAGGGAACTATTCTTCTTC]




>consensus_4597#1
TTCCTTCATGGTGGGGATCACAAATTGCGCTGGAGTTCTCAGATGGGGAGGAAGACTGGA
TCGTGGTGGAGNAGATCTGATCCGATCTCGGTCAGTTCGATCAAGAATTGCAAAATAAAG
AATGCAANAGAGGTCATCCATCCAATCCAATCATCCATGTGTTGGCTCTGTATGATCCTG
TCTCTCCCATCTGCTGGTGGTGTTCATATTATTGTTGCTCCAGTCGATTGTGTCCATGTG
TATATGGTGACTTTTAATCATCGCTTAATTTAGTTGTGGTCAATTAATTGGTCAAGGATT
ATGATGCATGATTCAAAACCTGAATTTATCTCATGTGTGAATAAAATGGAGAAGGGAACT
ATTCTTCTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4597#0      GGTGCCACGACCACCCCGCGGACAAGGCCCGGGACAAGGCGAAGGGGGCGCACAAGCTCC 60
consensus_4597#1      ------------------------------------------------------------
                                                                                  

consensus_4597#0      GGGCCTGCGACGTCGCGCTCAACCACCGCCTCGTGTCCTGGCGCGTCGTCGACAGCGCCG 120
consensus_4597#1      ------------------------------------------------------------
                                                                                  

consensus_4597#0      GGGCGTGGGCGGCCGGCACGGGAATCCCGGACTACAAGGGCGCCTCCGCGTCCGCCGTGC 180
consensus_4597#1      ------------------------------------------------------------
                                                                                  

consensus_4597#0      TGGCCTACCTCGCCGGGGGGAGCAGCTACCACGAGGACGACGACGACGGGGGCGCCCCCG 240
consensus_4597#1      ------------------------------------------------------------
                                                                                  

consensus_4597#0      CCCTGGAAGCCGCCCCGCCGGCCAGCGGCAGCGGCCTCTCTGACCTGTACGACCTCATCG 300
consensus_4597#1      ------------------------------------------------------------
                                                                                  

consensus_4597#0      TCGGCCACCACGCCGCCGCCCGCCAAGAGCCGGACACGGCGCGCGCCACTGACATAGAAG 360
consensus_4597#1      ------------------------------------------------------------
                                                                                  

consensus_4597#0      TAGCAAACAAGGACGGAATCGAGGAGGAGCCGGATCAAGATGCAGCAGCAGCGTCTGGTG 420
consensus_4597#1      ------------------------------------------------------------
                                                                                  

consensus_4597#0      AAGAGGAGGAAGAAGACGACATGGGCTTCTTCATGGTGGGGATCACAA-TTGCGCTGGAG 479
consensus_4597#1      -------------------------TTCCTTCATGGTGGGGATCACAAATTGCGCTGGAG 35
                                                * ******************** ***********

consensus_4597#0      TTCTCAGATGGGGAGGAAGACTGGATCGTGGTGGAGGAGATCTGATCCGATCTCGGTCAG 539
consensus_4597#1      TTCTCAGATGGGGAGGAAGACTGGATCGTGGTGGAGNAGATCTGATCCGATCTCGGTCAG 95
                      ************************************ ***********************

consensus_4597#0      TTCGATCAAGAATTGCAAAATAAAGAATGCAAGAGAGGTCATTCATCCAATCCAATCATN 599
consensus_4597#1      TTCGATCAAGAATTGCAAAATAAAGAATGCAANAGAGGTCATCCATCCAATCCAATCATC 155
                      ******************************** ********* **************** 

consensus_4597#0      CATGTGTTGGCTCTTGNATGATCCTTGTCTCTTCCATCTGGTTGGTGGTGTTCATATTAT 659
consensus_4597#1      CATGTGTTGGCTCT-GTATGATCCT-GTCTCTCCCATCTG-CTGGTGGTGTTCATATTAT 212
                      ************** * ******** ****** *******  ******************

consensus_4597#0      TGGTTGGTTCCAATCGAATGGGGTCCATT------------------------------- 688
consensus_4597#1      TGTT--GCTCCAGTCGA-TTGTGTCCATGTGTATATGGTGACTTTTAATCATCGCTTAAT 269
                      ** *  * **** **** * * ******                                

consensus_4597#0      ------------------------------------------------------------
consensus_4597#1      TTAGTTGTGGTCAATTAATTGGTCAAGGATTATGATGCATGATTCAAAACCTGAATTTAT 329
                                                                                  

consensus_4597#0      -----------------------------------------
consensus_4597#1      CTCATGTGTGAATAAAATGGAGAAGGGAACTATTCTTCTTC 370