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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4602#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1776 fasta sequence
[TCCGGAATCCTCTCGACCGTCGGGAAACTTGAGCCTTCAGCTTCCTCCTTCCTCCCCCATCGCCAATGGCATCCCCTTCCCTCGCTGCAGCAAATACACTTCGCGAGATCCTCCTCCTCCTCCTCCTCCCGCGTCGAAGCGAAATCGAAGCACACACTCCTCCTTTCACCTCCCCTTCACTTCTCCTCGCCGCCCAAGGGAAGGGCAAAGGTGGGGGAATCTTAGCTTACATAGGACCCAGGGGGGCGTCAGCGTCGTCTCTGCTTCTCCTTGTCTTGTTTGCAGGAATTGAGGGGAATTCTTTCTTTTTTCTTCGCTGGATTTGGTTTGGTTGGTTCGCTGCTGATATTGGTTGGACCGGATGCGGCTCTACTCATCTGCAGTCAATTTGCGGCGACCTTCTAAACGTACCATGTATTCCCAATCTAGTCAGTTTCATGGAGGATTAACACAGAGTTTGGGATTACGGAAGTGTTCACGCTCGCAGACATCCAGTTATAATGTGAAGCTGGGTCTTGTCGATTGTTCTCTACATAGGAATATAAAATCTTCTGACCGGCCTAGTCTGAGGTACTTTGTTAGCTTAGTGGGTCGGCAGTTCCGTTGTGGACTGTCAGGCAAAGAAGGTAGTTTAAATATGAAGCTCGACATGCCTTCCCGTGACAATTTCTCTAGTATGAGCTGGAAATGGAGAGGTTTGCATCAAAAAATAGGAGGTACAACCAGTGGACTTTGCTTAGGTTTTGCAGTTTCTGGAATAGCAAATGCTGAGGTTCCTGTGGAGATAAGCATCAGCAATTCAGCAGCATCTACCAGTTCAACTCATGGCAAAGAAGTCTATACGGATTATTCAGTAACAGGGATTCCTGGAGATGGAAGATGCTTATTCCGCTCTGTGATTCATGGGGCATGCATTAGGGCAGGAAGACCCATACCAAATGAAGATCTTCAGAGAAAGCTAGCTGACGAATTGAGGGCAATGGTTGCTGATGAATTTGTTAAGAGGCGGGAAGAATCGGAATGGTTTATTGAGGGAGATTTCGACACATATGTGTCCCATATTAGGCATCCACATGTGTGGGGCGGTGAACCAGAATTATTCATGGCTTCACATGTTCTTGAGATGCCAATAACGGTTTACATGCATGATGAAGATGCTGGTGGTTTAATAACAATTGCTGAATATGGCCAACAATATGGAAAAGAAGATCCAATCCAAGTTCTATATGATGGTTTTGCTCATTATGATGCTGTACAGATTCCAGCAAAAAAATGCTCCAGAGAGATGACTTCTGAATTTTTGAAGTTTCAAGGTTCAAATGGTAGGATTTGGTCTTAACCCATTTCCTTCCTTTCCATGTATTTGCAAGTATCGAAGTTCTGGTGGTTGACATTGACAATATCGCGCCGGTGAGAGTGAAGACTAGCTGTGATCTAGACATTGCTTTTCTTGTTAAAAGAAGCAAAATCCACCACTCTGATCAACCTTGTCTATATTCTTCAAATGGCTTTGTGTTCAGGATCCAGGCATAGATTCCTGAATCGAGATGGAAATAGATGACAA-GGCATATGTTTCTCGATGTGAATCTGCTGAAAGAGCCGAAACTGAATTGTTGTTATCCACACTCTAGTAATGCTTCTGGTAAAACGTGAGACAAGGCAGCATAAGCTTATGGATGATTGAATCCTGCTTGGTTAGTTAATACACTGATTGTAGGCACATGTAAGGGTGTAAGCCTGTAACTTACTGCAATATCCTGCATACTAATGTGATGA]
[+] EMBL AK073328 [TCCGGAATCCTCTCGACCGTCGGGAAACTTGAGCCTTCAGCTTCCTCCTTCCTCCCCCATCGCCAATGGCATCCCCTTCCCTCGCTGCAGCAAATACACTTCGCGAGATCCTCCTCCTCCTCCTCCTCCCGCGTCGAAGCGAAATCGAAGCACACACTCCTCCTTTCACCTCCCCTTCACTTCTCCTCGCCGCCCAAGGGAAGGGCAAAGGTGGGGGAATCTTAGCTTACATAGGACCCAGGGGGGCGTCAGCGTCGTCTCTGCTTCTCCTTGTCTTGTTTGCAGGAATTGAGGGGAATTCTTTCTTTTTTCTTCGCTGGATTTGGTTTGGTTGGTTCGCTGCTGATATTGGTTGGACCGGATGCGGCTCTACTCATCTGCAGTCAATTTGCGGCGACCTTCTAAACGTACCATGTATTCCCAATCTAGTCAGTTTCATGGAGGATTAACACAGAGTTTGGGATTACGGAAGTGTTCACGCTCGCAGACATCCAGTTATAATGTGAAGCTGGGTCTTGTCGATTGTTCTCTACATAGGAATATAAAATCTTCTGACCGGCCTAGTCTGAGGTACTTTGTTAGCTTAGTGGGTCGGCAGTTCCGTTGTGGACTGTCAGGCAAAGAAGGTAGTTTAAATATGAAGCTCGACATGCCTTCCCGTGACAATTTCTCTAGTATGAGCTGGAAATGGAGAGGTTTGCATCAAAAAATAGGAGGTACAACCAGTGGACTTTGCTTAGGTTTTGCAGTTTCTGGAATAGCAAATGCTGAGGTTCCTGTGGAGATAAGCATCAGCAATTCAGCAGCATCTACCAGTTCAACTCATGGCAAAGAAGTCTATACGGATTATTCAGTAACAGGGATTCCTGGAGATGGAAGATGCTTATTCCGCTCTGTGATTCATGGGGCATGCATTAGGGCAGGAAGACCCATACCAAATGAAGATCTTCAGAGAAAGCTAGCTGACGAATTGAGGGCAATGGTTGCTGATGAATTTGTTAAGAGGCGGGAAGAATCGGAATGGTTTATTGAGGGAGATTTCGACACATATGTGTCCCATATTAGGCATCCACATGTGTGGGGCGGTGAACCAGAATTATTCATGGCTTCACATGTTCTTGAGATGCCAATAACGGTTTACATGCATGATGAAGATGCTGGTGGTTTAATAACAATTGCTGAATATGGCCAACAATATGGAAAAGAAGATCCAATCCAAGTTCTATATGATGGTTTTGCTCATTATGATGCTGTACAGATTCCAGCAAAAAAATGCTCCAGAGAGATGACTTCTGAATTTTTGAAGTTTCAAGGTTCAAATGGTAGGATTTGGTCTTAACCCATTTCCTTCCTTTCCATGTATTTGCAAGTATCGAAGTTCTGGTGGTTGACATTGACAATATCGCGCCGGTGAGAGTGAAGACTAGCTGTGATCTAGACATTGCTTTTCTTGTTAAAAGAAGCAAAATCCACCACTCTGATCAACCTTGTCTATATTCTTCAAATGGCTTTGTGTTCAGGATCCAGGCATAGATTCCTGAATCGAGATGGAAATAGATGACAA GGCATATGTTTCTCGATGTGAATCTGCTGAAAGAGCCGAAACTGAATTGTTGTTATCCACACTCTAGTAATGCTTCTGGTAAAACGTGAGACAAGGCAGCATAAGCTTATGGATGATTGAATCCTGCTTGGTTAGTTAATACACTGATTGTAGGCACATGTAAGGGTGTAAGCCTGTAACTTACTGCAATATCCTGCATACTAATGTGATGA]
[+] EMBL C73490 [ ATTATGATGCTGTACAGATTCCAGCAAAAAAATGCTCCAGAGAGATGACTTCTGAATTTTTGAAGTTTCAAGGTTCAAATGGTAGGATTTGGTCTTAACCCATTTCCTTCCTTTCCATGTATTTGCAAGTATCGAAGTTCTGGTGGTTGACATTGACAATATCGCGCCGGTGAGAGTGAAGACTAGCTGTGATCTAGACATTGCTTTTCTTGTTAAAAGAAGCAAAATCCACCACTCTGATCAACCTTGTCTATATTCTNCAAATGGCTTTGTGTTCAGGATCCAGGCATAGATTCCTGAATCGAGATGGAAATAGATGACAAGGGCATATGTTTCTCGATGTGAATCTGCTGAAGGAGCCGAAACTGGATNGTTGTTATCCACACTCTAGTAATGCTTCTGGGTAAACGTGAGACAAGGCAGCATAAGCNAATGGGTG ]
consensusID : consensus_4602#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 797 fasta sequence
[GACGAGACAAGGGGGGCTGCAGCAAATACACCTCGCGAGATCCTCCTCCTCCTCCTCCTCCCGCGTCGAAGCGAAATCGAAGCACACACTCCTCCTTTCACCTCCCCTTCACTTCTCCTCGCCGCCCAAGGGAAGGGCAAAGGTGGGGGAATCTTAGCTTACATAGGACCCAGGGGGGCGTCAGCGTCGTCTCTGCTTCTCCTTGTCTTGTTTGCAGGAATTGAGGGGAATTCTTTCTTTTTTCTTCGCTGGATTTGGTTTGGTTGGTTCGCTGCTGATATTGGTTGGACCGGATGCGGCTCTACTCATCTGCAGTCAATTTGCGGCGACCTTCTAAACGTACCATGTATTCCCAATCTAGTCAGTTTCATGGAGGATTAACACAGAGTTTGGGATTACGGAAGTGTTCACGCTCGCAGACATCCAGTTATAATGTGAAGCTGGGTCTTGTCGATTGTTCTCTACATAGGAATATAAAATCTTCTGACCGGCCTAGTCTGAGGTACTTTGTTAGCTTAGTGGGTCGGCAGTTCCGTTGTGGACTGTCAGGCAAAGAAGGTAGTTTAAATATGAAGCTCGACATGCCTTCCCGTGACAATTTCTCTAGTATGAGCTGGAAATGGAGAGGTTTGCATCAAAAAATAGGAGGTACAACCAGTGGACTTTGCTTAGGTTTTGCAGTTTCTGGAATAGCAAATGCTGAGGNTCCTGTGGAGATAAGCATCAGCAATTCAGCAGCATCTACCAGTTCAACTCATGGCAAAAAAAGTCTATACGGATTATTCAGTAACAGGGGA]
[+] EMBL CA766788 [GACGAGACAAGGGGGGCTGCAGCAAATACACCTCGCGAGATCCTCCTCCTCCTCCTCCTCCCGCGTCGAAGCGAAATCGAAGCACACACTCCTCCTTTCACCTCCCCTTCACTTCTCCTCGCCGCCCAAGGGAAGGGCAAAGGTGGGGGAATCTTAGCTTACATAGGACCCAGGGGGGCGTCAGCGTCGTCTCTGCTTCTCCTTGTCTTGTTTGCAGGAATTGAGGGGAATTCTTTCTTTTTTCTTCGCTGGATTTGGTTTGGTTGGTTCGCTGCTGATATTGGTTGGACCGGATGCGGCTCTACTCATCTGCAGTCAATTTGCGGCGACCTTCTAAACGTACCATGTATTCCCAATCTAGTCAGTTTCATGGAGGATTAACACAGAGTTTGGGATTACGGAAGTGTTCACGCTCGCAGACATCCAGTTATAATGTGAAGCTGGGTCTTGTCGATTGTTCTCTACATAGGAATATAAAATCTTCTGACCGGCCTAGTCTGAGGTACTTTGTTAGCTTAGTGGGTCGGCAGTTCCGTTGTGGACTGTCAGGCAAAGAAGGTAGTTTAAATATGAAGCTCGACATGCCTTCCCGTGACAATTTCTCTAGTATGAGCTGGAAATGGAGAGGTTTGCATCAAAAAATAGGAGGTACAACCAGTGGACTTTGCTTAGGTTTTGCAGTTTCTGGAATAGCAAATGCTGAGGNTCCTGTGGAGATAAGCATCAGCAATTCAGCAGCATCTACCAGTTCAACTCATGGCAAAAAAAGTCTATACGGATTATTCAGTAACAGGGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4602#0 TCCGGAATCCTCTCGACCGTCGGGAAACTTGAGCCTTCAGCTTCCTCCTTCCTCCCCCAT 60
consensus_4602#1 ------------------------------------------------------------
consensus_4602#0 CGCCAATGGCATCCCCTTCCCTCGCTGCAGCAAATACACTTCGCGAGATCCTCCTCCTCC 120
consensus_4602#1 ----GACGAGA----CAAGGGGGGCTGCAGCAAATACACCTCGCGAGATCCTCCTCCTCC 52
* * * * **************** ********************
consensus_4602#0 TCCTCCTCCCGCGTCGAAGCGAAATCGAAGCACACACTCCTCCTTTCACCTCCCCTTCAC 180
consensus_4602#1 TCCTCCTCCCGCGTCGAAGCGAAATCGAAGCACACACTCCTCCTTTCACCTCCCCTTCAC 112
************************************************************
consensus_4602#0 TTCTCCTCGCCGCCCAAGGGAAGGGCAAAGGTGGGGGAATCTTAGCTTACATAGGACCCA 240
consensus_4602#1 TTCTCCTCGCCGCCCAAGGGAAGGGCAAAGGTGGGGGAATCTTAGCTTACATAGGACCCA 172
************************************************************
consensus_4602#0 GGGGGGCGTCAGCGTCGTCTCTGCTTCTCCTTGTCTTGTTTGCAGGAATTGAGGGGAATT 300
consensus_4602#1 GGGGGGCGTCAGCGTCGTCTCTGCTTCTCCTTGTCTTGTTTGCAGGAATTGAGGGGAATT 232
************************************************************
consensus_4602#0 CTTTCTTTTTTCTTCGCTGGATTTGGTTTGGTTGGTTCGCTGCTGATATTGGTTGGACCG 360
consensus_4602#1 CTTTCTTTTTTCTTCGCTGGATTTGGTTTGGTTGGTTCGCTGCTGATATTGGTTGGACCG 292
************************************************************
consensus_4602#0 GATGCGGCTCTACTCATCTGCAGTCAATTTGCGGCGACCTTCTAAACGTACCATGTATTC 420
consensus_4602#1 GATGCGGCTCTACTCATCTGCAGTCAATTTGCGGCGACCTTCTAAACGTACCATGTATTC 352
************************************************************
consensus_4602#0 CCAATCTAGTCAGTTTCATGGAGGATTAACACAGAGTTTGGGATTACGGAAGTGTTCACG 480
consensus_4602#1 CCAATCTAGTCAGTTTCATGGAGGATTAACACAGAGTTTGGGATTACGGAAGTGTTCACG 412
************************************************************
consensus_4602#0 CTCGCAGACATCCAGTTATAATGTGAAGCTGGGTCTTGTCGATTGTTCTCTACATAGGAA 540
consensus_4602#1 CTCGCAGACATCCAGTTATAATGTGAAGCTGGGTCTTGTCGATTGTTCTCTACATAGGAA 472
************************************************************
consensus_4602#0 TATAAAATCTTCTGACCGGCCTAGTCTGAGGTACTTTGTTAGCTTAGTGGGTCGGCAGTT 600
consensus_4602#1 TATAAAATCTTCTGACCGGCCTAGTCTGAGGTACTTTGTTAGCTTAGTGGGTCGGCAGTT 532
************************************************************
consensus_4602#0 CCGTTGTGGACTGTCAGGCAAAGAAGGTAGTTTAAATATGAAGCTCGACATGCCTTCCCG 660
consensus_4602#1 CCGTTGTGGACTGTCAGGCAAAGAAGGTAGTTTAAATATGAAGCTCGACATGCCTTCCCG 592
************************************************************
consensus_4602#0 TGACAATTTCTCTAGTATGAGCTGGAAATGGAGAGGTTTGCATCAAAAAATAGGAGGTAC 720
consensus_4602#1 TGACAATTTCTCTAGTATGAGCTGGAAATGGAGAGGTTTGCATCAAAAAATAGGAGGTAC 652
************************************************************
consensus_4602#0 AACCAGTGGACTTTGCTTAGGTTTTGCAGTTTCTGGAATAGCAAATGCTGAGGTTCCTGT 780
consensus_4602#1 AACCAGTGGACTTTGCTTAGGTTTTGCAGTTTCTGGAATAGCAAATGCTGAGGNTCCTGT 712
***************************************************** ******
consensus_4602#0 GGAGATAAGCATCAGCAATTCAGCAGCATCTACCAGTTCAACTCATGGCAAAGAA-GTCT 839
consensus_4602#1 GGAGATAAGCATCAGCAATTCAGCAGCATCTACCAGTTCAACTCATGGCAAAAAAAGTCT 772
**************************************************** ** ****
consensus_4602#0 ATACGGATTATTCAGTAACAGGGATTCCTGGAGATGGAAGATGCTTATTCCGCTCTGTGA 899
consensus_4602#1 ATACGGATTATTCAGTAACAGGGGA----------------------------------- 797
***********************
consensus_4602#0 TTCATGGGGCATGCATTAGGGCAGGAAGACCCATACCAAATGAAGATCTTCAGAGAAAGC 959
consensus_4602#1 ------------------------------------------------------------
consensus_4602#0 TAGCTGACGAATTGAGGGCAATGGTTGCTGATGAATTTGTTAAGAGGCGGGAAGAATCGG 1019
consensus_4602#1 ------------------------------------------------------------
consensus_4602#0 AATGGTTTATTGAGGGAGATTTCGACACATATGTGTCCCATATTAGGCATCCACATGTGT 1079
consensus_4602#1 ------------------------------------------------------------
consensus_4602#0 GGGGCGGTGAACCAGAATTATTCATGGCTTCACATGTTCTTGAGATGCCAATAACGGTTT 1139
consensus_4602#1 ------------------------------------------------------------
consensus_4602#0 ACATGCATGATGAAGATGCTGGTGGTTTAATAACAATTGCTGAATATGGCCAACAATATG 1199
consensus_4602#1 ------------------------------------------------------------
consensus_4602#0 GAAAAGAAGATCCAATCCAAGTTCTATATGATGGTTTTGCTCATTATGATGCTGTACAGA 1259
consensus_4602#1 ------------------------------------------------------------
consensus_4602#0 TTCCAGCAAAAAAATGCTCCAGAGAGATGACTTCTGAATTTTTGAAGTTTCAAGGTTCAA 1319
consensus_4602#1 ------------------------------------------------------------
consensus_4602#0 ATGGTAGGATTTGGTCTTAACCCATTTCCTTCCTTTCCATGTATTTGCAAGTATCGAAGT 1379
consensus_4602#1 ------------------------------------------------------------
consensus_4602#0 TCTGGTGGTTGACATTGACAATATCGCGCCGGTGAGAGTGAAGACTAGCTGTGATCTAGA 1439
consensus_4602#1 ------------------------------------------------------------
consensus_4602#0 CATTGCTTTTCTTGTTAAAAGAAGCAAAATCCACCACTCTGATCAACCTTGTCTATATTC 1499
consensus_4602#1 ------------------------------------------------------------
consensus_4602#0 TTCAAATGGCTTTGTGTTCAGGATCCAGGCATAGATTCCTGAATCGAGATGGAAATAGAT 1559
consensus_4602#1 ------------------------------------------------------------
consensus_4602#0 GACAAGGCATATGTTTCTCGATGTGAATCTGCTGAAAGAGCCGAAACTGAATTGTTGTTA 1619
consensus_4602#1 ------------------------------------------------------------
consensus_4602#0 TCCACACTCTAGTAATGCTTCTGGTAAAACGTGAGACAAGGCAGCATAAGCTTATGGATG 1679
consensus_4602#1 ------------------------------------------------------------
consensus_4602#0 ATTGAATCCTGCTTGGTTAGTTAATACACTGATTGTAGGCACATGTAAGGGTGTAAGCCT 1739
consensus_4602#1 ------------------------------------------------------------
consensus_4602#0 GTAACTTACTGCAATATCCTGCATACTAATGTGATGA 1776
consensus_4602#1 -------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||